#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13MR2|1|T+ 3MR2|1|P (rep)DNA (5'-D(*T*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*T)-3')Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)X-ray diffraction1.83212010-06-30
23L2C|1|B+ 3L2C|1|CFOXO consensus binding sequence, minus strand, FOXO consensus binding sequence, plus strandCrystal Structure of the DNA Binding Domain of FOXO4 Bound to DNAX-ray diffraction1.868262009-12-29
33O1R|1|C+ 3O1R|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDK)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.77252010-11-17
43BIE|1|C+ 3BIE|1|BDNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(P*DAP*DGP*DGP*DTP*DAP*DAP*(MA7)P*DAP*DCP*DCP*DGP*DT)-3')X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGX-ray diffraction1.68252008-04-22
52IRF|1|F+ 2IRF|1|ADNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.2251999-10-08
63OHA|1|T+ 3OHA|1|P5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(P*TP*(8OG)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3'Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesionX-ray diffraction2242010-12-22
73H8O|1|B+ 3H8O|1|C5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(MA7)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction2262010-03-31
83O1M|1|B+ 3O1M|1|CDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(ME6)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.75252010-11-17
92IRF|1|D+ 2IRF|1|CDNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.2251999-10-08
102IRF|1|E+ 2IRF|1|BDNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3')CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-ray diffraction2.2241999-10-08
113O1P|1|B+ 3O1P|1|CDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(EDA)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.51252010-11-17
123H8R|1|B+ 3H8R|1|C5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(6MA)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction1.77262010-03-31
133BTX|1|B+ 3BTX|1|CDNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3')X-ray structure of human ABH2 bound to dsDNA through active site cross-linkingX-ray diffraction2262008-04-22
141SXQ|1|C+ 1SXQ|1|E5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3'BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-ray diffraction1.8262004-06-22
152HHW|1|F+ 2HHW|1|E5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-ray diffraction1.88202006-12-12
161YO5|1|A+ 1YO5|1|BEnhancer site of Prostate Specific Antigen Promoter RegionAnalysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory siteX-ray diffraction2262005-05-17
171GD2|1|A+ 1GD2|1|BDNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3')CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-ray diffraction2262000-10-02
182HHW|1|C+ 2HHW|1|B5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-ray diffraction1.88202006-12-12
192HVI|1|F+ 2HVI|1|E5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:G pair in the polymerase active site (0 position)X-ray diffraction1.98212006-12-12
201GD2|1|C+ 1GD2|1|DDNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3')CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-ray diffraction2262000-10-02
213O1O|1|B+ 3O1O|1|CDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(MFT)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.92252010-11-17
223O1T|1|C+ 3O1T|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDU)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.48252010-11-17
233O1U|1|C+ 3O1U|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDV)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.54252010-11-17
242UYC|1|C+ 2UYC|1|D5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3', 5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP *GP*AP*C)-3'synthetic constructHhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-ray diffraction2252008-05-27
253H8X|1|B+ 3H8X|1|C5'-D(*CP*TP*GP*TP*(ME6)P*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*AP*AP*TP*AP*AP*GP*AP*CP*A)-3'synthetic constructStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-ray diffraction1.95262010-03-31
262HVI|1|C+ 2HVI|1|B5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:G pair in the polymerase active site (0 position)X-ray diffraction1.98212006-12-12
271J1V|1|B+ 1J1V|1|C5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3', 5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3'Crystal structure of DnaA domainIV complexed with DnaAbox DNAX-ray diffraction2.1262003-04-22
283O1V|1|C+ 3O1V|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDJ)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.9252010-11-17
292UZ4|1|C+ 2UZ4|1|D5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3', 5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP*GP *AP*C)-3'HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-ray diffraction2.1252008-06-03
301SXQ|1|D+ 1SXQ|1|F5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3'BGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-ray diffraction1.8262004-06-22
313O1S|1|C+ 3O1S|1|BDNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDQ)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.58252010-11-17
321OE5|1|F+ 1OE5|1|E5'-D(*CP*3DRP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*GP)-3', 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3'Xenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-ray diffraction2.3252003-07-11
334BDP|1|T+ 4BDP|1|PDNA (5'-D(*GP*CP*AP*TP*CP*AP*TP*GP*CP*AP*A)-3'), DNA (5'-D(*TP*AP*TP*TP*GP*CP*AP*TP*GP*AP*TP*GP*C)-3')CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUESX-ray diffraction1.8241999-01-13
343BI3|1|B+ 3BI3|1|CDNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(*TP*AP*GP*GP*TP*AP*AP*(MA7)P*AP*(2YR)P*CP*GP*T)-3')X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsX-ray diffraction1.9252008-04-22
351PP7|1|E+ 1PP7|1|FFERREDOXIN INRCrystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin InrX-ray diffraction2.45252003-11-18
363G0R|1|G+ 3G0R|1|K5'-D(*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*CP*G)-3'Complex of Mth0212 and an 8bp dsDNA with distorted endsX-ray diffraction2.4212010-03-09
371M5R|1|C+ 1M5R|1|E5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction1.8262002-12-11
382OXV|1|CDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.X-ray diffraction1.95132007-10-23
391U8B|1|E+ 1U8B|1|D5'-D(*AP*AP*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*T)-3', 5'-D(P*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*AP*T)-3'Crystal structure of the methylated N-ADA/DNA complexX-ray diffraction2.1242005-10-11
401M5R|1|D+ 1M5R|1|F5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction1.8262002-12-11
412ZO0|1|D+ 2ZO0|1|EDNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3')mouse NP95 SRA domain DNA specific complex 1X-ray diffraction2.19262008-09-09
422HVH|1|F+ 2HVH|1|E5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:O6MeG pair in the polymerase active site (0 position)X-ray diffraction2.492202006-12-12
433A46|1|E+ 3A46|1|FDNACrystal structure of MvNei1/THF complexX-ray diffraction2.2262009-07-21
443BKZ|1|B+ 3BKZ|1|CDNA (5'-D(*DAP*DAP*DCP*DGP*DAP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(*DTP*DAP*DGP*DGP*DTP*DAP*DAP*DCP*DAP*DTP*DCP*DGP*DT)-3')X-ray structure of E coli AlkB crosslinked to dsDNA in the active siteX-ray diffraction1.65262008-04-22
452HVH|1|C+ 2HVH|1|B5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3'ddCTP:O6MeG pair in the polymerase active site (0 position)X-ray diffraction2.492202006-12-12
461P1Y|1|X5'-D(*GP*GP*AP*(CBR)P*AP*GP*AP*(BRU)P*GP*GP*GP*AP*G)-3'Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)X-ray diffraction2.1132004-06-01
473BTY|1|B+ 3BTY|1|CDNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3')Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active siteX-ray diffraction2.35262008-04-22
482ZO1|1|D+ 2ZO1|1|EDNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3')Mouse NP95 SRA domain DNA specific complex 2X-ray diffraction1.96212008-09-09
493BU0|1|B+ 3BU0|1|CDNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3')crystal structure of human ABH2 cross-linked to dsDNA with cofactorsX-ray diffraction2.5262008-04-22
501Y8Z|1|C+ 1Y8Z|1|D5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*G)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3'alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolutionX-ray diffraction1.9222005-08-30
512HHX|1|C+ 2HHX|1|B5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*G)-3'O6-methyl-guanine in the polymerase template preinsertion siteX-ray diffraction2.26192006-12-12
523I0X|1|C+ 3I0X|1|D5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*AP*TP*GP*GP*A)-3'Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoGX-ray diffraction1.8252009-09-29
533A46|1|C+ 3A46|1|DDNACrystal structure of MvNei1/THF complexX-ray diffraction2.2262009-07-21
541PUY|1|A5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.5122003-10-14
552UYH|1|C+ 2UYH|1|D5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3', 5'-D(*TP*GP*GP*AP*TP*G*5CMP*GP*CP*TP*GP *AP*C)-3'HhaI DNA methyltransferase S87Q-Q237S mutant complex with 13mer GCGC- GMGC oligonucleotide and SAHX-ray diffraction2.63252008-05-27
561SXP|1|C+ 1SXP|1|D5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3'BGT in complex with a 13mer DNA containing a central A:G mismatchX-ray diffraction2.5242004-06-22
571Y6F|1|C+ 1Y6F|1|D5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(3DR)P*AP*GP*AP*TP*AP*G)-3'alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic siteX-ray diffraction2.4262005-08-30
583EYZ|1|C+ 3EYZ|1|B5'-D(*DAP*DTP*DGP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DGP*DA)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DGP*DC)-3'Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)X-ray diffraction2.1232009-11-10
593BTZ|1|B+ 3BTZ|1|CDNA (5'-D(*AP*GP*GP*TP*GP*AP*(2YR)P*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DTP*DTP*DAP*DTP*DCP*DAP*DCP*DC)-3')Crystal structure of human ABH2 cross-linked to dsDNAX-ray diffraction3262008-04-22
603I0W|1|B+ 3I0W|1|C5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3'Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoGX-ray diffraction1.73252009-09-29
611PUY|1|B5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.5122003-10-14
622FCC|1|C+ 2FCC|1|DDNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3')Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-ray diffraction2.3252006-10-03
631KFV|1|D+ 1KFV|1|E5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3', 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3'Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-ray diffraction2.55252002-06-14
641IXY|1|D+ 1IXY|1|F5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction2.5262002-12-04
652GIE|1|E+ 2GIE|1|F5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*G)-3'HincII bound to cognate DNA GTTAACX-ray diffraction2.6262006-07-18
661IXY|1|C+ 1IXY|1|E5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3'Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-ray diffraction2.5262002-12-04
671WTE|1|X+ 1WTE|1|Y5'-D(*AP*CP*CP*GP*GP*GP*CP*CP*CP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*GP*GP*GP*CP*CP*CP*GP*GP*T)-3'Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNAX-ray diffraction1.9262004-12-14
681PH5|1|G5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG(3DR)GGX-ray diffraction2.3122003-06-17
691PH5|1|H5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG(3DR)GGX-ray diffraction2.3122003-06-17
703BUC|1|B+ 3BUC|1|CDNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3')X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KGX-ray diffraction2.59262008-04-22
711PH9|1|G5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGGX-ray diffraction2.5122003-06-17
723KOV|1|K+ 3KOV|1|LDNA (5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3')Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-ray diffraction2.9262010-02-16
731PH8|1|H5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGGX-ray diffraction2.36122003-06-17
741PH9|1|H5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGGX-ray diffraction2.5122003-06-17
751PH6|1|H5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'Crystal Structure of THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGTGGX-ray diffraction2.1122003-06-17
761PH8|1|G5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGGX-ray diffraction2.36122003-06-17
772UZK|1|D+ 2UZK|1|F5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3'Homo sapiensCrystal structure of the human FOXO3a-DBD bound to DNAX-ray diffraction2.7262008-05-13
781PH6|1|G5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'Crystal Structure of THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGTGGX-ray diffraction2.1122003-06-17
791PH4|1|G5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCGX-ray diffraction2.3122003-06-17
802GIE|1|G+ 2GIE|1|H5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*G)-3'HincII bound to cognate DNA GTTAACX-ray diffraction2.6262006-07-18
813GYH|1|Y+ 3GYH|1|ZDNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*GP*GP*CP*TP*AP*GP*TP*A)-3')Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POBX-ray diffraction2.8262009-06-16
821PH4|1|H5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCGX-ray diffraction2.3122003-06-17
831PH3|1|G5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTGX-ray diffraction2.3122003-06-17
841PHJ|1|G5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGGX-ray diffraction2.5122003-06-17
851YQM|1|B+ 1YQM|1|C5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(7GU)P*GP*TP*CP*TP*AP*C)-3'Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNAX-ray diffraction2.5252005-04-05
861PH1|1|H5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGGGTX-ray diffraction2.51132003-06-17
872UZK|1|B+ 2UZK|1|E5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3'Homo sapiensCrystal structure of the human FOXO3a-DBD bound to DNAX-ray diffraction2.7262008-05-13
881PH1|1|D5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGGGTX-ray diffraction2.51132003-06-17
891PHJ|1|H5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGGX-ray diffraction2.5122003-06-17
901PH1|1|G5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGGGTX-ray diffraction2.51132003-06-17
911PH3|1|H5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTGX-ray diffraction2.3122003-06-17
921Y6G|1|C+ 1Y6G|1|D5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*T)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3'alpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolutionX-ray diffraction2.8252005-08-30
931KFV|1|G+ 1KFV|1|H5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3', 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3'Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-ray diffraction2.55252002-06-14
943GX4|1|Y+ 3GX4|1|ZDNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3')Crystal Structure Analysis of S. Pombe ATL in complex with DNAX-ray diffraction2.7262009-06-09
952FCC|1|E+ 2FCC|1|FDNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3')Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-ray diffraction2.3252006-10-03
961YQL|1|B+ 1YQL|1|C5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(PPW)P*GP*TP*CP*TP*AP*C)-3'Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNAX-ray diffraction2.6252005-04-05
971PH7|1|G5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGIGGX-ray diffraction2.9122003-06-17
983GFI|1|D+ 3GFI|1|E5'-D(*TP*AP*AP*CP*AP*AP*TP*AP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*GP*CP*TP*AP*TP*TP*GP*T)-3'Crystal structure of ST1710 complexed with its promoter DNAX-ray diffraction2.1232009-08-25
991PH7|1|H5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3'CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGIGGX-ray diffraction2.9122003-06-17
1002R9L|1|F+ 2R9L|1|D+ 2R9L|1|C+ 2R9L|1|EDNA (5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DAP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DAP*DCP*DGP*DCP*DAP*DCP*DG)-3'), DNA (5'-D(P*DGP*DCP*DGP*DGP*DC)-3')synthetic constructPolymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNAX-ray diffraction2.4342008-01-08
1013KOV|1|C+ 3KOV|1|DDNA (5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3')Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-ray diffraction2.9262010-02-16
1023E54|1|C+ 3E54|1|E+ 3E54|1|D+ 3E54|1|FDNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(P*DGP*DGP*DTP*DAP*DGP*DCP*DCP*DAP*DA)-3')Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNAX-ray diffraction2.5442008-12-30
1033PVI|1|C+ 3PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSISX-ray diffraction1.59261998-10-14
1041DC1|1|C+ 1DC1|1|WDNA (5'-D(*T*AP*TP*AP*CP*TP*CP*GP*AP*GP*TP*AP*T)-3')RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLDX-ray diffraction1.7252001-02-21
1051EYU|1|C+ 1EYU|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6X-ray diffraction1.78262000-07-21
1062HR1|1|D+ 2HR1|1|C5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcyX-ray diffraction1.96252006-09-19
1072PVI|1|C+ 2PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*(C38)P*TP*GP*GP*TP*C)-3')PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNAX-ray diffraction1.76261999-12-20
1081VAS|1|B+ 1VAS|1|CDNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3')ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITIONX-ray diffraction2.75261996-01-31
1091F0O|1|C+ 1F0O|1|D(5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3')PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITEX-ray diffraction2.5262000-11-06
1101CKQ|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEXX-ray diffraction1.85131999-04-26
1112Z6U|1|D+ 2Z6U|1|CDNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3')Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-ray diffraction2.72252007-11-20
1122ZCJ|1|D+ 2ZCJ|1|CDNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3')Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-ray diffraction2.75252007-12-04
1132Z6A|1|D+ 2Z6A|1|CDNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3')synthetic constructS-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine MethylationX-ray diffraction2.88252007-08-21
1143KTU|1|B+ 3KTU|1|CDNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3')synthetic constructStructure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNAX-ray diffraction2.3252010-07-14
1153E6C|1|A+ 3E6C|1|BDNA (5'-D(P*DGP*DCP*DAP*DTP*DTP*DAP*DAP*DCP*DAP*DTP*DGP*DCP*DC)-3'), DNA (5'-D(P*DGP*DGP*DCP*DAP*DTP*DGP*DTP*DTP*DAP*DAP*DTP*DGP*DC)-3')CprK OCPA DNA ComplexX-ray diffraction1.8262008-09-30
1163GV5|1|F+ 3GV5|1|E5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3'Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-ray diffraction2222009-06-02
1173GV5|1|T+ 3GV5|1|P5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3'Human DNA polymerase iota in complex with T template DNA and incoming ddADPX-ray diffraction2222009-06-02
1181A73|1|C+ 1A73|1|E+ 1A73|1|D+ 1A73|1|FDNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3')INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNAX-ray diffraction1.8421998-10-14
1191LLM|1|A+ 1LLM|1|B5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3'Crystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-ray diffraction1.5262003-09-30
1201QUM|1|D+ 1QUM|1|C+ 1QUM|1|B5'-D(*(3DR)P*CP*GP*AP*CP*GP*A)-3', 5'-D(*CP*GP*TP*CP*C)-3', 5'-D(*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*G)-3'CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNAX-ray diffraction1.55261999-08-31
1212C7O|1|C+ 2C7O|1|D5'-D(*T*GP*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP *C)-3', 5'-D(*T*GP*TP*CP*AP*(2PR)*CP*GP*CP*AP*TP*CP *C)-3'synthetic constructHhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAHX-ray diffraction1.9252005-12-14
1222C7Q|1|C+ 2C7Q|1|D5'-D(*T*GP*GP*(2PR)*GP*GP*(5CM)*GP*CP*TP*GP* AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*CP*GP*CP*CP*GP*CP*C)-3'synthetic constructHhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAHX-ray diffraction1.85252005-12-14
1231K3W|1|B+ 1K3W|1|C5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3'Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-ray diffraction1.42182002-10-04
1241K82|1|E+ 1K82|1|I5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.1252002-06-14
1251K82|1|G+ 1K82|1|K5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.1252002-06-14
1261K82|1|H+ 1K82|1|L5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.1252002-06-14
1271K3X|1|B+ 1K3X|1|C5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3'Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-ray diffraction1.25192002-10-04
1281DUX|1|A+ 1DUX|1|BDNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3')ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-ray diffraction2.1262000-04-17
1291DUX|1|D+ 1DUX|1|EDNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3')ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-ray diffraction2.1262000-04-17
1301FJX|1|C+ 1FJX|1|DDNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3')STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCYX-ray diffraction2.26262000-12-15
1311YF3|1|C+ 1YF3|1|D5'-D(*AP*CP*CP*AP*TP*GP*AP*TP*CP*TP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*CP*AP*TP*GP*G)-3'T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) ContactX-ray diffraction2.29262005-05-17
1321K82|1|F+ 1K82|1|J5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3'Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-ray diffraction2.1252002-06-14
1331SKM|1|C+ 1SKM|1|D5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3', 5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3'HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target siteX-ray diffraction2.2242004-08-24
1341F6O|1|D+ 1F6O|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNAX-ray diffraction2.4262000-12-11
1351MEY|1|A+ 1MEY|1|BDNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*TP*(C38)P*A)-3')CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-ray diffraction2.2261997-03-12
1361MEY|1|D+ 1MEY|1|EDNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*TP*(C38)P*A)-3')CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-ray diffraction2.2261997-03-12
1371TX3|1|E+ 1TX3|1|F5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3'HINCII BOUND TO COGNATE DNAX-ray diffraction2.5262005-02-15
1381TX3|1|G+ 1TX3|1|H5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3'HINCII BOUND TO COGNATE DNAX-ray diffraction2.5262005-02-15
1392KTQ|1|D+ 2KTQ|1|BDNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUSX-ray diffraction2.3251999-01-13
1401PVI|1|C+ 1PVI|1|DDNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNAX-ray diffraction2.6261995-02-14
1411DIZ|1|C+ 1DIZ|1|DDNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')Escherichia coliCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-ray diffraction2.5262000-03-20
1421DIZ|1|E+ 1DIZ|1|FDNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')Escherichia coliCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-ray diffraction2.5262000-03-20
1431MHT|1|C+ 1MHT|1|BDNA (5'-D(*TP*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3')COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINEX-ray diffraction2.6251995-06-03
1441BNK|1|D+ 1BNK|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*YRRP*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNAX-ray diffraction2.7261998-10-21
1451F4R|1|D+ 1F4R|1|EDNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDA)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNAX-ray diffraction2.4242000-12-11
1462I9K|1|C+ 2I9K|1|D5'-D(*T*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaIX-ray diffraction2.65252006-10-10
1474MHT|1|D+ 4MHT|1|CDNA (5'-D(*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3')TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCYX-ray diffraction2.7251997-01-27
1483MHT|1|D+ 3MHT|1|CDNA (5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3')TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCYX-ray diffraction2.7251997-01-27
1491TW8|1|E+ 1TW8|1|F5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3'HincII bound to Ca2+ and cognate DNA GTCGACX-ray diffraction2.8262004-08-10
1504KTQ|1|C+ 4KTQ|1|BDNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNAX-ray diffraction2.5251999-01-13
1511ODH|1|C+ 1ODH|1|D5'-D(*CP*GP*AP*TP*GP*CP*GP*GP*GP*TP *GP*CP*A)-3', 5'-D(*TP*GP*CP*AP*CP*CP*CP*GP*CP*AP *TP*CP*G)-3'Structure of the GCM domain bound to DNAX-ray diffraction2.85262003-04-08
1521TW8|1|G+ 1TW8|1|H5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3'HincII bound to Ca2+ and cognate DNA GTCGACX-ray diffraction2.8262004-08-10
1531CL8|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*(PRN)P*TP*TP*CP*GP*CP*G)-3')A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)X-ray diffraction1.8131999-05-19
1541T7P|1|T+ 1T7P|1|PDNA (5'-D(P*CP*CP*TP*TP*GP*GP*CP*AP*CP*TP*GP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*2DA)-3')T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXINX-ray diffraction2.2241998-02-25
1551D31|1|A+ 1D31|1|BDNA (5'-D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTSX-ray diffraction2.6261992-04-15
1562OQ4|1|E+ 2OQ4|1|F5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-ray diffraction2.6192008-02-26
1571ZJG|1|A+ 1ZJG|1|B5'-D(*AP*TP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*CP*CP*CP*GP*CP*CP*CP*CP*A)-3'13mer-coX-ray diffraction3262005-05-10
1582PIS|1|A+ 2PIS|1|BDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.8262007-10-30
1592OQ4|1|C+ 2OQ4|1|D5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-ray diffraction2.6222008-02-26
1602PIS|1|C+ 2PIS|1|DDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.8262007-10-30
1611ERI|1|BDNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGEX-ray diffraction2.5131995-02-07
1621QRH|1|M5'-(TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G*)-3'X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 AX-ray diffraction2.5131999-06-23
1631QRI|1|M5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 AX-ray diffraction2.6131999-06-23
1642PIS|1|G+ 2PIS|1|HDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.8262007-10-30
1652PIS|1|E+ 2PIS|1|FDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.8262007-10-30
1662PIS|1|I+ 2PIS|1|JDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.8262007-10-30
1672PIS|1|K+ 2PIS|1|LDNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3')Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-ray diffraction2.8262007-10-30

Release history

Release0.6
Date2011-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
11PH1|1|DCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGGGTX-RAY DIFFRACTION2.5113quadruplex,structurechromatin,structural,telomere
22R9L|1|F+ 2R9L|1|D+ 2R9L|1|C+ 2R9L|1|EPolymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNAX-RAY DIFFRACTION2.434B-form double helix,double helix,structureenzyme,ligase
31TW8|1|G+ 1TW8|1|HHincII bound to Ca2+ and cognate DNA GTCGACX-RAY DIFFRACTION2.826enzyme,hydrolase,nuclease
42GIE|1|G+ 2GIE|1|HHincII bound to cognate DNA GTTAACX-RAY DIFFRACTION2.626enzyme,hydrolase,nuclease
52GIE|1|E+ 2GIE|1|FHincII bound to cognate DNA GTTAACX-RAY DIFFRACTION2.626enzyme,hydrolase,nuclease
61TX3|1|E+ 1TX3|1|FHINCII BOUND TO COGNATE DNAX-RAY DIFFRACTION2.526enzyme,hydrolase,nuclease
71TW8|1|E+ 1TW8|1|FHincII bound to Ca2+ and cognate DNA GTCGACX-RAY DIFFRACTION2.826enzyme,hydrolase,nuclease
81TX3|1|G+ 1TX3|1|HHINCII BOUND TO COGNATE DNAX-RAY DIFFRACTION2.526enzyme,hydrolase,nuclease
93BIE|1|C+ 3BIE|1|BX-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGX-RAY DIFFRACTION1.6825enzyme,oxidoreductase
103O1S|1|C+ 3O1S|1|BIron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5825enzyme,oxidoreductase
113O1R|1|C+ 3O1R|1|BIron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.7725enzyme,oxidoreductase
123O1U|1|C+ 3O1U|1|BIron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5425enzyme,oxidoreductase
133O1T|1|C+ 3O1T|1|BIron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.4825enzyme,oxidoreductase
143O1V|1|C+ 3O1V|1|BIron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.925enzyme,oxidoreductase
153BI3|1|B+ 3BI3|1|CX-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsX-RAY DIFFRACTION1.925enzyme,oxidoreductase
163O1P|1|B+ 3O1P|1|CIron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.5125enzyme,oxidoreductase
173O1M|1|B+ 3O1M|1|CIron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.7525enzyme,oxidoreductase
183O1O|1|B+ 3O1O|1|CIron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.9225enzyme,oxidoreductase
193BKZ|1|B+ 3BKZ|1|CX-ray structure of E coli AlkB crosslinked to dsDNA in the active siteX-RAY DIFFRACTION1.6526B-form double helix,double helix,feature,mispair,structureenzyme,oxidoreductase
201Y8Z|1|C+ 1Y8Z|1|Dalpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolutionX-RAY DIFFRACTION1.922enzyme,transferase
211M5R|1|C+ 1M5R|1|ETernary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION1.826enzyme,transferase
221IXY|1|C+ 1IXY|1|ETernary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION2.526enzyme,transferase
231IXY|1|D+ 1IXY|1|FTernary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION2.526enzyme,transferase
241SXP|1|C+ 1SXP|1|DBGT in complex with a 13mer DNA containing a central A:G mismatchX-RAY DIFFRACTION2.524enzyme,transferase
251M5R|1|D+ 1M5R|1|FTernary complex of T4 phage BGT with UDP and a 13 mer DNA duplexX-RAY DIFFRACTION1.826enzyme,transferase
261Y6F|1|C+ 1Y6F|1|Dalpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic siteX-RAY DIFFRACTION2.426enzyme,transferase
271Y6G|1|C+ 1Y6G|1|Dalpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolutionX-RAY DIFFRACTION2.825enzyme,transferase
282IRF|1|D+ 2IRF|1|CCRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.225B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
292IRF|1|F+ 2IRF|1|ACRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.225B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
302IRF|1|E+ 2IRF|1|BCRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.X-RAY DIFFRACTION2.224B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
312PIS|1|I+ 2PIS|1|JEfforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.826B-form double helix,double helix,structure
322PIS|1|A+ 2PIS|1|BEfforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.826B-form double helix,double helix,structure
332PIS|1|G+ 2PIS|1|HEfforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.826B-form double helix,double helix,structure
341FJX|1|C+ 1FJX|1|DSTRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCYX-RAY DIFFRACTION2.2626B-form double helix,double helix,structureenzyme,methylase,transferase
352I9K|1|C+ 2I9K|1|DEngineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaIX-RAY DIFFRACTION2.6525B-form double helix,double helix,structureenzyme,methylase,transferase
362C7O|1|C+ 2C7O|1|DHhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAHX-RAY DIFFRACTION1.925B-form double helix,double helix,structureenzyme,methylase,transferase
372UYC|1|C+ 2UYC|1|DHhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-RAY DIFFRACTION225double helix,structureenzyme,methylase,transferase
382UZ4|1|C+ 2UZ4|1|DHhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAHX-RAY DIFFRACTION2.125double helix,structureenzyme,methylase,transferase
391SKM|1|C+ 1SKM|1|DHhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target siteX-RAY DIFFRACTION2.224B-form double helix,double helix,structureenzyme,methylase,transferase
402C7Q|1|C+ 2C7Q|1|DHhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAHX-RAY DIFFRACTION1.8525enzyme,methylase,transferase
412UYH|1|C+ 2UYH|1|DHhaI DNA methyltransferase S87Q-Q237S mutant complex with 13mer GCGC- GMGC oligonucleotide and SAHX-RAY DIFFRACTION2.6325enzyme,methylase,transferase
424BDP|1|T+ 4BDP|1|PCRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUESX-RAY DIFFRACTION1.824B-form double helix,double helix,structureenzyme,polymerase,transferase
433EYZ|1|C+ 3EYZ|1|BCocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)X-RAY DIFFRACTION2.123B-form double helix,double helix,structureenzyme,polymerase,transferase
441T7P|1|T+ 1T7P|1|PT7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXINX-RAY DIFFRACTION2.224double helix,structureenzyme,oxidoreductase,polymerase,transferase
452ZO0|1|D+ 2ZO0|1|Emouse NP95 SRA domain DNA specific complex 1X-RAY DIFFRACTION2.1926B-form double helix,double helix,structureenzyme,ligase
462ZO1|1|D+ 2ZO1|1|EMouse NP95 SRA domain DNA specific complex 2X-RAY DIFFRACTION1.9621B-form double helix,double helix,structureenzyme,ligase
471OE5|1|F+ 1OE5|1|EXenopus SMUG1, an anti-mutator uracil-DNA GlycosylaseX-RAY DIFFRACTION2.325enzyme,hydrolase
481D31|1|A+ 1D31|1|BTHE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTSX-RAY DIFFRACTION2.626double helix,structure
491A73|1|C+ 1A73|1|E+ 1A73|1|D+ 1A73|1|FINTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNAX-RAY DIFFRACTION1.842double helix,structureenzyme,hydrolase,nuclease
501F0O|1|C+ 1F0O|1|DPVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITEX-RAY DIFFRACTION2.526double helix,structureenzyme,hydrolase,nuclease
511EYU|1|C+ 1EYU|1|DHIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6X-RAY DIFFRACTION1.7826double helix,structureenzyme,hydrolase,nuclease
521PVI|1|C+ 1PVI|1|DSTRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNAX-RAY DIFFRACTION2.626double helix,structureenzyme,hydrolase,nuclease
532PVI|1|C+ 2PVI|1|DPVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNAX-RAY DIFFRACTION1.7626double helix,structureenzyme,hydrolase,nuclease
543PVI|1|C+ 3PVI|1|DD34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSISX-RAY DIFFRACTION1.5926double helix,structureenzyme,hydrolase,nuclease
551WTE|1|X+ 1WTE|1|YCrystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNAX-RAY DIFFRACTION1.926double helix,structureenzyme,hydrolase,nuclease
561CKQ|1|BPRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEXX-RAY DIFFRACTION1.8513double helix,structureenzyme,hydrolase,nuclease
571QRI|1|MX-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 AX-RAY DIFFRACTION2.613B-form double helix,double helix,structureenzyme,hydrolase,nuclease
581QRH|1|MX-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 AX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
591ERI|1|BX-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGEX-RAY DIFFRACTION2.513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
601CL8|1|BA PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)X-RAY DIFFRACTION1.813B-form double helix,double helix,structureenzyme,hydrolase,nuclease
612OXV|1|CStructure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.X-RAY DIFFRACTION1.9513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
621DC1|1|C+ 1DC1|1|WRESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLDX-RAY DIFFRACTION1.725double helix,structureenzyme,hydrolase,nuclease
633OHA|1|T+ 3OHA|1|PYeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesionX-RAY DIFFRACTION224double helix,structureenzyme,polymerase,transferase
641GD2|1|A+ 1GD2|1|BCRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-RAY DIFFRACTION226B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
651GD2|1|C+ 1GD2|1|DCRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNAX-RAY DIFFRACTION226B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
663E54|1|C+ 3E54|1|E+ 3E54|1|D+ 3E54|1|FArchaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNAX-RAY DIFFRACTION2.544B-form double helix,double helix,structureenzyme,hydrolase,nuclease
673G0R|1|G+ 3G0R|1|KComplex of Mth0212 and an 8bp dsDNA with distorted endsX-RAY DIFFRACTION2.421B-form double helix,double helix,feature,mispair,structureenzyme,hydrolase,nuclease
683KOV|1|C+ 3KOV|1|DStructure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-RAY DIFFRACTION2.926B-form double helix,double helix,structureDNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription
693KOV|1|K+ 3KOV|1|LStructure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factorsX-RAY DIFFRACTION2.926B-form double helix,double helix,structureDNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription
701YF3|1|C+ 1YF3|1|DT4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) ContactX-RAY DIFFRACTION2.2926enzyme,methylase,transferase
712UZK|1|B+ 2UZK|1|ECrystal structure of the human FOXO3a-DBD bound to DNAX-RAY DIFFRACTION2.726double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
722UZK|1|D+ 2UZK|1|FCrystal structure of the human FOXO3a-DBD bound to DNAX-RAY DIFFRACTION2.726double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
733L2C|1|B+ 3L2C|1|CCrystal Structure of the DNA Binding Domain of FOXO4 Bound to DNAX-RAY DIFFRACTION1.86826B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
741ODH|1|C+ 1ODH|1|DStructure of the GCM domain bound to DNAX-RAY DIFFRACTION2.8526B-form double helix,double helix,structureregulatory,transcription
751MEY|1|D+ 1MEY|1|ECRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-RAY DIFFRACTION2.226B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
761MEY|1|A+ 1MEY|1|BCRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNAX-RAY DIFFRACTION2.226B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
774KTQ|1|C+ 4KTQ|1|BBINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNAX-RAY DIFFRACTION2.525double helix,structureenzyme,polymerase,transferase
782KTQ|1|D+ 2KTQ|1|BOPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUSX-RAY DIFFRACTION2.325enzyme,polymerase,transferase
791PP7|1|E+ 1PP7|1|FCrystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin InrX-RAY DIFFRACTION2.4525B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
803E6C|1|A+ 3E6C|1|BCprK OCPA DNA ComplexX-RAY DIFFRACTION1.826B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
811U8B|1|E+ 1U8B|1|DCrystal structure of the methylated N-ADA/DNA complexX-RAY DIFFRACTION2.124B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription
821J1V|1|B+ 1J1V|1|CCrystal structure of DnaA domainIV complexed with DnaAbox DNAX-RAY DIFFRACTION2.126B-form double helix,double helix,structureDNA replication/repair,regulatory
831LLM|1|A+ 1LLM|1|BCrystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-RAY DIFFRACTION1.526B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
841DUX|1|D+ 1DUX|1|EELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-RAY DIFFRACTION2.126DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
851DUX|1|A+ 1DUX|1|BELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITIONX-RAY DIFFRACTION2.126DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
861YO5|1|A+ 1YO5|1|BAnalysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory siteX-RAY DIFFRACTION226B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
873GFI|1|D+ 3GFI|1|ECrystal structure of ST1710 complexed with its promoter DNAX-RAY DIFFRACTION2.123B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
881SXQ|1|D+ 1SXQ|1|FBGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-RAY DIFFRACTION1.826B-form double helix,double helix,structureenzyme,transferase
891SXQ|1|C+ 1SXQ|1|EBGT in complex with a 13mer DNA containing a central C:G base pair and UDPX-RAY DIFFRACTION1.826B-form double helix,double helix,structureenzyme,transferase
902PIS|1|C+ 2PIS|1|DEfforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.826B-form double helix,double helix,structure
912PIS|1|E+ 2PIS|1|FEfforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.826B-form double helix,double helix,structure
923GX4|1|Y+ 3GX4|1|ZCrystal Structure Analysis of S. Pombe ATL in complex with DNAX-RAY DIFFRACTION2.726DNA replication/repair,regulatory
933GYH|1|Y+ 3GYH|1|ZCrystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POBX-RAY DIFFRACTION2.826DNA replication/repair,regulatory
941MHT|1|C+ 1MHT|1|BCOVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINEX-RAY DIFFRACTION2.625B-form double helix,double helix,structureenzyme,methylase,transferase
953MHT|1|D+ 3MHT|1|CTERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCYX-RAY DIFFRACTION2.725B-form double helix,double helix,structureenzyme,methylase,transferase
964MHT|1|D+ 4MHT|1|CTERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCYX-RAY DIFFRACTION2.725B-form double helix,double helix,structureenzyme,methylase,transferase
972ZCJ|1|D+ 2ZCJ|1|CTernary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-RAY DIFFRACTION2.7525B-form double helix,double helix,structureenzyme,methylase,transferase
982Z6U|1|D+ 2Z6U|1|CTernary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcyX-RAY DIFFRACTION2.7225B-form double helix,double helix,structureenzyme,methylase,transferase
992HR1|1|D+ 2HR1|1|CTernary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcyX-RAY DIFFRACTION1.9625B-form double helix,double helix,structureenzyme,methylase,transferase
1002Z6A|1|D+ 2Z6A|1|CS-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine MethylationX-RAY DIFFRACTION2.8825B-form double helix,double helix,structureenzyme,methylase,transferase
1011F6O|1|D+ 1F6O|1|ECRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNAX-RAY DIFFRACTION2.426B-form double helix,double helix,structureenzyme,hydrolase
1021BNK|1|D+ 1BNK|1|EHUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNAX-RAY DIFFRACTION2.726B-form double helix,double helix,structureenzyme,hydrolase
1031F4R|1|D+ 1F4R|1|ECRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNAX-RAY DIFFRACTION2.424B-form double helix,double helix,structureenzyme,hydrolase
1043BTZ|1|B+ 3BTZ|1|CCrystal structure of human ABH2 cross-linked to dsDNAX-RAY DIFFRACTION326B-form double helix,double helix,structureenzyme,oxidoreductase
1053H8X|1|B+ 3H8X|1|CStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION1.9526enzyme,oxidoreductase
1063KTU|1|B+ 3KTU|1|CStructure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNAX-RAY DIFFRACTION2.325B-form double helix,double helix,structureenzyme,hydrolase
1071YQL|1|B+ 1YQL|1|CCatalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNAX-RAY DIFFRACTION2.625B-form double helix,double helix,structureenzyme,hydrolase
1081YQM|1|B+ 1YQM|1|CCatalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNAX-RAY DIFFRACTION2.525B-form double helix,double helix,structureenzyme,hydrolase
1092FCC|1|C+ 2FCC|1|DCrystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-RAY DIFFRACTION2.325double helix,structureenzyme,hydrolase,nuclease
1102FCC|1|E+ 2FCC|1|FCrystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic SiteX-RAY DIFFRACTION2.325double helix,structureenzyme,hydrolase,nuclease
1111VAS|1|B+ 1VAS|1|CATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITIONX-RAY DIFFRACTION2.7526enzyme,hydrolase,nuclease
1123A46|1|E+ 3A46|1|FCrystal structure of MvNei1/THF complexX-RAY DIFFRACTION2.226double helix,structureenzyme,hydrolase
1133A46|1|C+ 3A46|1|DCrystal structure of MvNei1/THF complexX-RAY DIFFRACTION2.226double helix,structureenzyme,hydrolase
1141K82|1|H+ 1K82|1|LCrystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.125B-form double helix,double helix,structureenzyme,hydrolase
1151K82|1|G+ 1K82|1|KCrystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.125B-form double helix,double helix,structureenzyme,hydrolase
1161K82|1|F+ 1K82|1|JCrystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.125B-form double helix,double helix,structureenzyme,hydrolase
1171K82|1|E+ 1K82|1|ICrystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNAX-RAY DIFFRACTION2.125B-form double helix,double helix,structureenzyme,hydrolase
1181DIZ|1|E+ 1DIZ|1|FCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-RAY DIFFRACTION2.526B-form double helix,double helix,structureenzyme,hydrolase
1191DIZ|1|C+ 1DIZ|1|DCRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNAX-RAY DIFFRACTION2.526B-form double helix,double helix,structureenzyme,hydrolase
1201QUM|1|D+ 1QUM|1|C+ 1QUM|1|BCRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNAX-RAY DIFFRACTION1.5526B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1211KFV|1|D+ 1KFV|1|ECrystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-RAY DIFFRACTION2.5525B-form double helix,double helix,structureenzyme,hydrolase
1221KFV|1|G+ 1KFV|1|HCrystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.X-RAY DIFFRACTION2.5525B-form double helix,double helix,structureenzyme,hydrolase
1232OQ4|1|C+ 2OQ4|1|DCrystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-RAY DIFFRACTION2.622double helix,structureenzyme,hydrolase,nuclease
1241K3W|1|B+ 1K3W|1|CCrystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-RAY DIFFRACTION1.4218B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1251K3X|1|B+ 1K3X|1|CCrystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-RAY DIFFRACTION1.2519B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1262OQ4|1|E+ 2OQ4|1|FCrystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrateX-RAY DIFFRACTION2.619double helix,structureenzyme,hydrolase,nuclease
1271ZJG|1|A+ 1ZJG|1|B13mer-coX-RAY DIFFRACTION326A-form double helix,double helix,structure
1283GV5|1|F+ 3GV5|1|EHuman DNA polymerase iota in complex with T template DNA and incoming ddADPX-RAY DIFFRACTION222enzyme,polymerase,transferase
1293GV5|1|T+ 3GV5|1|PHuman DNA polymerase iota in complex with T template DNA and incoming ddADPX-RAY DIFFRACTION222enzyme,polymerase,transferase
1303I0W|1|B+ 3I0W|1|CCrystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoGX-RAY DIFFRACTION1.7325B-form double helix,double helix,structureenzyme,hydrolase
1313I0X|1|C+ 3I0X|1|DCrystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoGX-RAY DIFFRACTION1.825B-form double helix,double helix,structureenzyme,hydrolase
1322PIS|1|K+ 2PIS|1|LEfforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base PairsX-RAY DIFFRACTION2.826B-form double helix,double helix,structure
1331P1Y|1|XCrystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)X-RAY DIFFRACTION2.113designed assembly,structure
1342HVH|1|F+ 2HVH|1|EddCTP:O6MeG pair in the polymerase active site (0 position)X-RAY DIFFRACTION2.49220B-form double helix,double helix,structureenzyme,polymerase,transferase
1352HHW|1|F+ 2HHW|1|EddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-RAY DIFFRACTION1.8820double helix,structureenzyme,polymerase,transferase
1362HHW|1|C+ 2HHW|1|BddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformationX-RAY DIFFRACTION1.8820double helix,structureenzyme,polymerase,transferase
1372HVI|1|F+ 2HVI|1|EddCTP:G pair in the polymerase active site (0 position)X-RAY DIFFRACTION1.9821B-form double helix,double helix,structureenzyme,polymerase,transferase
1382HVI|1|C+ 2HVI|1|BddCTP:G pair in the polymerase active site (0 position)X-RAY DIFFRACTION1.9821B-form double helix,double helix,structureenzyme,polymerase,transferase
1392HVH|1|C+ 2HVH|1|BddCTP:O6MeG pair in the polymerase active site (0 position)X-RAY DIFFRACTION2.49220B-form double helix,double helix,structureenzyme,polymerase,transferase
1402HHX|1|C+ 2HHX|1|BO6-methyl-guanine in the polymerase template preinsertion siteX-RAY DIFFRACTION2.2619B-form double helix,double helix,structureenzyme,polymerase,transferase
1413MR2|1|T+ 3MR2|1|PHuman DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)X-RAY DIFFRACTION1.8321B-form double helix,double helix,structureenzyme,polymerase,transferase
1423H8O|1|B+ 3H8O|1|CStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION226enzyme,oxidoreductase
1433H8R|1|B+ 3H8R|1|CStructure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest systemX-RAY DIFFRACTION1.7726enzyme,oxidoreductase
1443BTX|1|B+ 3BTX|1|CX-ray structure of human ABH2 bound to dsDNA through active site cross-linkingX-RAY DIFFRACTION226enzyme,oxidoreductase
1453BU0|1|B+ 3BU0|1|Ccrystal structure of human ABH2 cross-linked to dsDNA with cofactorsX-RAY DIFFRACTION2.526enzyme,oxidoreductase
1463BUC|1|B+ 3BUC|1|CX-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KGX-RAY DIFFRACTION2.5926enzyme,oxidoreductase
1473BTY|1|B+ 3BTY|1|CCrystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active siteX-RAY DIFFRACTION2.3526enzyme,oxidoreductase
1481PH1|1|HCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGGGTX-RAY DIFFRACTION2.5113quadruplex,structurechromatin,structural,telomere
1491PH8|1|HCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGGX-RAY DIFFRACTION2.3612quadruplex,structurechromatin,structural,telomere
1501PH5|1|HCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG(3DR)GGX-RAY DIFFRACTION2.312quadruplex,structurechromatin,structural,telomere
1511PH3|1|HCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTGX-RAY DIFFRACTION2.312quadruplex,structurechromatin,structural,telomere
1521PH4|1|HCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCGX-RAY DIFFRACTION2.312quadruplex,structurechromatin,structural,telomere
1531PHJ|1|HCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGGX-RAY DIFFRACTION2.512quadruplex,structurechromatin,structural,telomere
1541PH6|1|HCrystal Structure of THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGTGGX-RAY DIFFRACTION2.112quadruplex,structurechromatin,structural,telomere
1551PH9|1|HCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGGX-RAY DIFFRACTION2.512quadruplex,structurechromatin,structural,telomere
1561PH9|1|GCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGGX-RAY DIFFRACTION2.512quadruplex,structurechromatin,structural,telomere
1571PH4|1|GCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCGX-RAY DIFFRACTION2.312quadruplex,structurechromatin,structural,telomere
1581PH3|1|GCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTGX-RAY DIFFRACTION2.312quadruplex,structurechromatin,structural,telomere
1591PH5|1|GCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG(3DR)GGX-RAY DIFFRACTION2.312quadruplex,structurechromatin,structural,telomere
1601PH8|1|GCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGGX-RAY DIFFRACTION2.3612quadruplex,structurechromatin,structural,telomere
1611PH1|1|GCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGGGTX-RAY DIFFRACTION2.5113quadruplex,structurechromatin,structural,telomere
1621PHJ|1|GCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGGX-RAY DIFFRACTION2.512quadruplex,structurechromatin,structural,telomere
1631PH6|1|GCrystal Structure of THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGTGGX-RAY DIFFRACTION2.112quadruplex,structurechromatin,structural,telomere
1641PH7|1|GCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGIGGX-RAY DIFFRACTION2.912quadruplex,structurechromatin,structural,telomere
1651PH7|1|HCRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGIGGX-RAY DIFFRACTION2.912quadruplex,structurechromatin,structural,telomere
1661PUY|1|B1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.512B-form double helix,double helix,structure
1671PUY|1|A1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.512B-form double helix,double helix,structure

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0549 s