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Equivalence class DNA_3.0_88087.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13OYM|1|C+ 3OYM|1|D (rep)DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV N224H mutant intasome bound to manganeseX-ray diffraction2.02362010-11-17
23OY9|1|C+ 3OY9|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolutionX-ray diffraction2.55362010-10-20
33OYB|1|C+ 3OYB|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK2048X-ray diffraction2.54362010-11-17
43OYL|1|C+ 3OYL|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217H mutant intasome bound to magnesium and the INSTI MK2048X-ray diffraction2.54362010-11-17
53OYG|1|C+ 3OYG|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound1 (CompoundG)X-ray diffraction2.56362010-11-17
63OYF|1|C+ 3OYF|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI L-870,810X-ray diffraction2.51362010-11-17
73OYC|1|C+ 3OYC|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI PICAX-ray diffraction2.66362010-11-17
83OYD|1|C+ 3OYD|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI GS9160X-ray diffraction2.54362010-11-17
93OYA|1|C+ 3OYA|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolutionX-ray diffraction2.65362010-10-20
103OYN|1|C+ 3OYN|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV N224H mutant intasome bound to magnesium and the INSTI MK2048X-ray diffraction2.68362010-11-17
113L2R|1|C+ 3L2R|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesiumX-ray diffraction2.88362010-02-09
123OYK|1|C+ 3OYK|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217H mutant intasome bound to manganeseX-ray diffraction2.72362010-11-17
133OYE|1|C+ 3OYE|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound2X-ray diffraction2.74362010-11-17
143OYH|1|C+ 3OYH|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK0536X-ray diffraction2.74362010-11-17
153OYJ|1|C+ 3OYJ|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217Q mutant intasome in complex with magnesium and the INSTI MK2048X-ray diffraction2.68362010-11-17
163OYI|1|C+ 3OYI|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217Q mutant intasome in complex with manganeseX-ray diffraction2.72362010-11-17
173OS0|1|C+ 3OS0|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')PFV strand transfer complex (STC) at 2.81 A resolutionX-ray diffraction2.81362010-11-17
183OS1|1|C+ 3OS1|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*(2DA))-3')PFV target capture complex (TCC) at 2.97 A resolutionX-ray diffraction2.97362010-11-17

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
13OYL|1|C+ 3OYL|1|DCrystal structure of the PFV S217H mutant intasome bound to magnesium and the INSTI MK2048X-RAY DIFFRACTION2.5436enzyme,recombinase
23OYN|1|C+ 3OYN|1|DCrystal structure of the PFV N224H mutant intasome bound to magnesium and the INSTI MK2048X-RAY DIFFRACTION2.6836enzyme,recombinase
33OYK|1|C+ 3OYK|1|DCrystal structure of the PFV S217H mutant intasome bound to manganeseX-RAY DIFFRACTION2.7236enzyme,recombinase
43OY9|1|C+ 3OY9|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolutionX-RAY DIFFRACTION2.5536enzyme,recombinase
53OYI|1|C+ 3OYI|1|DCrystal structure of the PFV S217Q mutant intasome in complex with manganeseX-RAY DIFFRACTION2.7236enzyme,recombinase
63OYC|1|C+ 3OYC|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI PICAX-RAY DIFFRACTION2.6636enzyme,recombinase
73OYA|1|C+ 3OYA|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolutionX-RAY DIFFRACTION2.6536enzyme,recombinase
83OYH|1|C+ 3OYH|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK0536X-RAY DIFFRACTION2.7436enzyme,recombinase
93OYF|1|C+ 3OYF|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI L-870,810X-RAY DIFFRACTION2.5136enzyme,recombinase
103OYD|1|C+ 3OYD|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI GS9160X-RAY DIFFRACTION2.5436enzyme,recombinase
113OYE|1|C+ 3OYE|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound2X-RAY DIFFRACTION2.7436enzyme,recombinase
123OYB|1|C+ 3OYB|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK2048X-RAY DIFFRACTION2.5436enzyme,recombinase
133OYG|1|C+ 3OYG|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound1 (CompoundG)X-RAY DIFFRACTION2.5636enzyme,recombinase
143OYJ|1|C+ 3OYJ|1|DCrystal structure of the PFV S217Q mutant intasome in complex with magnesium and the INSTI MK2048X-RAY DIFFRACTION2.6836enzyme,recombinase
153L2R|1|C+ 3L2R|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesiumX-RAY DIFFRACTION2.8836enzyme,recombinase
163OS0|1|C+ 3OS0|1|DPFV strand transfer complex (STC) at 2.81 A resolutionX-RAY DIFFRACTION2.8136enzyme,recombinase
173OS1|1|C+ 3OS1|1|DPFV target capture complex (TCC) at 2.97 A resolutionX-RAY DIFFRACTION2.9736enzyme,recombinase
183OYM|1|C+ 3OYM|1|DCrystal structure of the PFV N224H mutant intasome bound to manganeseX-RAY DIFFRACTION2.0236enzyme,recombinase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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