Equivalence class DNA_3.0_93082.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1JT0|1|E+ 1JT0|1|F (rep) | QACA operator | Crystal structure of a cooperative QacR-DNA complex | X-ray diffraction | 2.9 | 56 | 2002-03-08 | ||||
| 2 | 1X9N|1|D+ 1X9N|1|C+ 1X9N|1|B | 5'-phosphorylated DNA, dideoxy terminated DNA, template DNA | Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA | X-ray diffraction | 3 | 40 | 2004-11-30 | ||||
| 3 | 2NVQ|1|T+ 2NVQ|1|N+ 2NVQ|1|R | 28-MER DNA template strand, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' | synthetic construct | RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP | X-ray diffraction | 2.9 | 52 | 2006-12-12 | |||
| 4 | 2XHB|1|D | HYPOXANTHINE-CONTAINING DNA | Crystal structure of DNA polymerase from Thermococcus gorgonarius in complex with hypoxanthine-containing DNA | X-ray diffraction | 2.72 | 20 | 2010-07-21 | ||||
| 5 | 1BR3|1|B+ 1BR3|1|A | DNA (10-23 DNA ENZYME), RNA (5'-R(*GP*GP*AP*CP*AP*GP*AP*UP*GP*GP*GP*AP*G)-3') | CRYSTAL STRUCTURE OF AN 82-NUCLEOTIDE RNA-DNA COMPLEX FORMED BY THE 10-23 DNA ENZYME | X-ray diffraction | 3 | 41 | 1999-02-23 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2011-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1JT0|1|E+ 1JT0|1|F | Crystal structure of a cooperative QacR-DNA complex | X-RAY DIFFRACTION | 2.9 | 56 | B-form double helix,double helix,structure | regulatory,transcription | |
| 2 | 1X9N|1|D+ 1X9N|1|C+ 1X9N|1|B | Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA | X-RAY DIFFRACTION | 3 | 40 | B-form double helix,double helix,structure | enzyme,ligase | |
| 3 | 2XHB|1|D | Crystal structure of DNA polymerase from Thermococcus gorgonarius in complex with hypoxanthine-containing DNA | X-RAY DIFFRACTION | 2.72 | 20 | enzyme,polymerase,transferase | ||
| 4 | 2NVQ|1|T+ 2NVQ|1|N+ 2NVQ|1|R | RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP | X-RAY DIFFRACTION | 2.9 | 52 | enzyme,polymerase,transferase | ||
| 5 | 1BR3|1|B+ 1BR3|1|A | CRYSTAL STRUCTURE OF AN 82-NUCLEOTIDE RNA-DNA COMPLEX FORMED BY THE 10-23 DNA ENZYME | X-RAY DIFFRACTION | 3 | 41 | Holliday junction,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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