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Equivalence class DNA_3.0_93940.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
12O5I|1|X+ 2O5I|1|Y+ 2O5I|1|Z (rep)5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3'Crystal structure of the T. thermophilus RNA polymerase elongation complexX-ray diffraction2.5522007-07-03
22O5I|1|G+ 2O5I|1|H+ 2O5I|1|I5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3'Crystal structure of the T. thermophilus RNA polymerase elongation complexX-ray diffraction2.5522007-07-03
32O5J|1|G+ 2O5J|1|H+ 2O5J|1|I5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3'Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analogX-ray diffraction3522007-07-03
42O5J|1|X+ 2O5J|1|Y+ 2O5J|1|Z5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3'Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analogX-ray diffraction3522007-07-03
52PPB|1|X+ 2PPB|1|Y+ 2PPB|1|ZDNA (5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3'), RNA (5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3')Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the ntp substrate analog and antibiotic streptolydiginX-ray diffraction3522007-07-17
63L1P|1|M+ 3L1P|1|NDNA (5'-D(*AP*TP*CP*CP*AP*TP*TP*TP*GP*CP*CP*TP*TP*TP*CP*AP*AP*AP*TP*GP*TP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*AP*CP*AP*TP*TP*TP*GP*AP*AP*AP*GP*GP*CP*AP*AP*AP*TP*GP*GP*A)-3')POU protein:DNA complexX-ray diffraction2.8462010-12-15
72PPB|1|G+ 2PPB|1|H+ 2PPB|1|IDNA (5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3'), RNA (5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3')Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the ntp substrate analog and antibiotic streptolydiginX-ray diffraction3522007-07-17
83CDM|1|BDNA (5'-D(*DT*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DG)-3')Structural adaptation and conservation in quadruplex-drug recognitionX-ray diffraction2.1232008-09-23
93CDM|1|ADNA (5'-D(*DT*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DG)-3')Structural adaptation and conservation in quadruplex-drug recognitionX-ray diffraction2.1222008-09-23
102RBA|1|C+ 2RBA|1|DDNA (5'-D(*DCP*DAP*DGP*DCP*DTP*DCP*DTP*DGP*DTP*DAP*DCP*DGP*DTP*DGP*DAP*DGP*DCP*DAP*DGP*DTP*DGP*DGP*DA)-3'), DNA (5'-D(*DCP*DCP*DAP*DCP*DTP*DGP*DCP*DTP*DCP*DAP*(3DR)P*DGP*DTP*DAP*DCP*DAP*DGP*DAP*DGP*DCP*DTP*DGP*DT)-3')Structure of Human Thymine DNA Glycosylase Bound to Abasic and Undamaged DNAX-ray diffraction2.79462008-06-17

Release history

Release0.6
Date2011-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
12O5I|1|X+ 2O5I|1|Y+ 2O5I|1|ZCrystal structure of the T. thermophilus RNA polymerase elongation complexX-RAY DIFFRACTION2.552enzyme,polymerase,transferase
22O5I|1|G+ 2O5I|1|H+ 2O5I|1|ICrystal structure of the T. thermophilus RNA polymerase elongation complexX-RAY DIFFRACTION2.552enzyme,polymerase,transferase
32PPB|1|X+ 2PPB|1|Y+ 2PPB|1|ZCrystal structure of the T. thermophilus RNAP polymerase elongation complex with the ntp substrate analog and antibiotic streptolydiginX-RAY DIFFRACTION352enzyme,polymerase,transferase
42PPB|1|G+ 2PPB|1|H+ 2PPB|1|ICrystal structure of the T. thermophilus RNAP polymerase elongation complex with the ntp substrate analog and antibiotic streptolydiginX-RAY DIFFRACTION352enzyme,polymerase,transferase
52O5J|1|G+ 2O5J|1|H+ 2O5J|1|ICrystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analogX-RAY DIFFRACTION352enzyme,polymerase,transferase
62O5J|1|X+ 2O5J|1|Y+ 2O5J|1|ZCrystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analogX-RAY DIFFRACTION352enzyme,polymerase,transferase
73CDM|1|AStructural adaptation and conservation in quadruplex-drug recognitionX-RAY DIFFRACTION2.122quadruplex,structure
83CDM|1|BStructural adaptation and conservation in quadruplex-drug recognitionX-RAY DIFFRACTION2.123quadruplex,structure
92RBA|1|C+ 2RBA|1|DStructure of Human Thymine DNA Glycosylase Bound to Abasic and Undamaged DNAX-RAY DIFFRACTION2.7946B-form double helix,double helix,structureenzyme,hydrolase
103L1P|1|M+ 3L1P|1|NPOU protein:DNA complexX-RAY DIFFRACTION2.846B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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