Equivalence class DNA_3.5_86977.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3O1M|1|B+ 3O1M|1|C (rep) | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(ME6)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.75 | 25 | 2010-11-17 | ||||
| 2 | 3MR2|1|T+ 3MR2|1|P | DNA (5'-D(*T*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*T)-3') | Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm) | X-ray diffraction | 1.83 | 21 | 2010-06-30 | ||||
| 3 | 3O1P|1|B+ 3O1P|1|C | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(EDA)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.51 | 25 | 2010-11-17 | ||||
| 4 | 3BKZ|1|B+ 3BKZ|1|C | DNA (5'-D(*DAP*DAP*DCP*DGP*DAP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(*DTP*DAP*DGP*DGP*DTP*DAP*DAP*DCP*DAP*DTP*DCP*DGP*DT)-3') | X-ray structure of E coli AlkB crosslinked to dsDNA in the active site | X-ray diffraction | 1.65 | 26 | 2008-04-22 | ||||
| 5 | 3BIE|1|C+ 3BIE|1|B | DNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(P*DAP*DGP*DGP*DTP*DAP*DAP*(MA7)P*DAP*DCP*DCP*DGP*DT)-3') | X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KG | X-ray diffraction | 1.68 | 25 | 2008-04-22 | ||||
| 6 | 1SXQ|1|C+ 1SXQ|1|E | 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3' | BGT in complex with a 13mer DNA containing a central C:G base pair and UDP | X-ray diffraction | 1.8 | 26 | 2004-06-22 | ||||
| 7 | 1SXQ|1|D+ 1SXQ|1|F | 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3' | BGT in complex with a 13mer DNA containing a central C:G base pair and UDP | X-ray diffraction | 1.8 | 26 | 2004-06-22 | ||||
| 8 | 3O1T|1|C+ 3O1T|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDU)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.48 | 25 | 2010-11-17 | ||||
| 9 | 3I0X|1|C+ 3I0X|1|D | 5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*AP*TP*GP*GP*A)-3' | Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoG | X-ray diffraction | 1.8 | 25 | 2009-09-29 | ||||
| 10 | 3I0W|1|B+ 3I0W|1|C | 5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3' | Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoG | X-ray diffraction | 1.73 | 25 | 2009-09-29 | ||||
| 11 | 3O1U|1|C+ 3O1U|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDV)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.54 | 25 | 2010-11-17 | ||||
| 12 | 1M5R|1|C+ 1M5R|1|E | 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3' | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-ray diffraction | 1.8 | 26 | 2002-12-11 | ||||
| 13 | 1M5R|1|D+ 1M5R|1|F | 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3' | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-ray diffraction | 1.8 | 26 | 2002-12-11 | ||||
| 14 | 3O1R|1|C+ 3O1R|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDK)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.77 | 25 | 2010-11-17 | ||||
| 15 | 2HHW|1|C+ 2HHW|1|B | 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation | X-ray diffraction | 1.88 | 20 | 2006-12-12 | ||||
| 16 | 2HHW|1|F+ 2HHW|1|E | 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation | X-ray diffraction | 1.88 | 20 | 2006-12-12 | ||||
| 17 | 3O1O|1|B+ 3O1O|1|C | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*T*AP*GP*GP*TP*AP*AP*(MFT)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.92 | 25 | 2010-11-17 | ||||
| 18 | 2UYC|1|C+ 2UYC|1|D | 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3', 5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP *GP*AP*C)-3' | synthetic construct | HhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAH | X-ray diffraction | 2 | 25 | 2008-05-27 | |||
| 19 | 3H8R|1|B+ 3H8R|1|C | 5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(6MA)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3' | synthetic construct | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-ray diffraction | 1.77 | 26 | 2010-03-31 | |||
| 20 | 3L2C|1|B+ 3L2C|1|C | FOXO consensus binding sequence, minus strand, FOXO consensus binding sequence, plus strand | Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNA | X-ray diffraction | 1.868 | 26 | 2009-12-29 | ||||
| 21 | 3OHA|1|T+ 3OHA|1|P | 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(P*TP*(8OG)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3' | Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesion | X-ray diffraction | 2 | 24 | 2010-12-22 | ||||
| 22 | 3O1S|1|C+ 3O1S|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDQ)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.58 | 25 | 2010-11-17 | ||||
| 23 | 3BTX|1|B+ 3BTX|1|C | DNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3') | X-ray structure of human ABH2 bound to dsDNA through active site cross-linking | X-ray diffraction | 2 | 26 | 2008-04-22 | ||||
| 24 | 2HVI|1|C+ 2HVI|1|B | 5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddCTP:G pair in the polymerase active site (0 position) | X-ray diffraction | 1.98 | 21 | 2006-12-12 | ||||
| 25 | 2HVI|1|F+ 2HVI|1|E | 5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddCTP:G pair in the polymerase active site (0 position) | X-ray diffraction | 1.98 | 21 | 2006-12-12 | ||||
| 26 | 2UZ4|1|C+ 2UZ4|1|D | 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3', 5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP*GP *AP*C)-3' | HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAH | X-ray diffraction | 2.1 | 25 | 2008-06-03 | ||||
| 27 | 3H8X|1|B+ 3H8X|1|C | 5'-D(*CP*TP*GP*TP*(ME6)P*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*AP*AP*TP*AP*AP*GP*AP*CP*A)-3' | synthetic construct | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-ray diffraction | 1.95 | 26 | 2010-03-31 | |||
| 28 | 3O1V|1|C+ 3O1V|1|B | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDJ)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.9 | 25 | 2010-11-17 | ||||
| 29 | 3H8O|1|B+ 3H8O|1|C | 5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*(MA7)P*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*TP*AP*TP*AP*AP*TP*AP*CP*A)-3' | synthetic construct | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-ray diffraction | 2 | 26 | 2010-03-31 | |||
| 30 | 2ZO1|1|D+ 2ZO1|1|E | DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3') | Mouse NP95 SRA domain DNA specific complex 2 | X-ray diffraction | 1.96 | 21 | 2008-09-09 | ||||
| 31 | 3BI3|1|B+ 3BI3|1|C | DNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3'), DNA (5'-D(*TP*AP*GP*GP*TP*AP*AP*(MA7)P*AP*(2YR)P*CP*GP*T)-3') | X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactors | X-ray diffraction | 1.9 | 25 | 2008-04-22 | ||||
| 32 | 1PUY|1|A | 5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3' | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-ray diffraction | 1.5 | 12 | 2003-10-14 | ||||
| 33 | 1PUY|1|B | 5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3' | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-ray diffraction | 1.5 | 12 | 2003-10-14 | ||||
| 34 | 3E6C|1|A+ 3E6C|1|B | DNA (5'-D(P*DGP*DCP*DAP*DTP*DTP*DAP*DAP*DCP*DAP*DTP*DGP*DCP*DC)-3'), DNA (5'-D(P*DGP*DGP*DCP*DAP*DTP*DGP*DTP*DTP*DAP*DAP*DTP*DGP*DC)-3') | CprK OCPA DNA Complex | X-ray diffraction | 1.8 | 26 | 2008-09-30 | ||||
| 35 | 1YO5|1|A+ 1YO5|1|B | Enhancer site of Prostate Specific Antigen Promoter Region | Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory site | X-ray diffraction | 2 | 26 | 2005-05-17 | ||||
| 36 | 1OE5|1|F+ 1OE5|1|E | 5'-D(*CP*3DRP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*GP)-3', 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3' | Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase | X-ray diffraction | 2.3 | 25 | 2003-07-11 | ||||
| 37 | 4BDP|1|T+ 4BDP|1|P | DNA (5'-D(*GP*CP*AP*TP*CP*AP*TP*GP*CP*AP*A)-3'), DNA (5'-D(*TP*AP*TP*TP*GP*CP*AP*TP*GP*AP*TP*GP*C)-3') | CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES | X-ray diffraction | 1.8 | 24 | 1999-01-13 | ||||
| 38 | 1Y8Z|1|C+ 1Y8Z|1|D | 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*G)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3' | alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolution | X-ray diffraction | 1.9 | 22 | 2005-08-30 | ||||
| 39 | 3EYZ|1|C+ 3EYZ|1|B | 5'-D(*DAP*DTP*DGP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DGP*DA)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DGP*DC)-3' | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form) | X-ray diffraction | 2.1 | 23 | 2009-11-10 | ||||
| 40 | 2IRF|1|D+ 2IRF|1|C | DNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3') | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-ray diffraction | 2.2 | 25 | 1999-10-08 | ||||
| 41 | 2IRF|1|E+ 2IRF|1|B | DNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3') | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-ray diffraction | 2.2 | 24 | 1999-10-08 | ||||
| 42 | 2IRF|1|F+ 2IRF|1|A | DNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3') | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-ray diffraction | 2.2 | 25 | 1999-10-08 | ||||
| 43 | 2OXV|1|C | DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site. | X-ray diffraction | 1.95 | 13 | 2007-10-23 | ||||
| 44 | 2ZO0|1|D+ 2ZO0|1|E | DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3') | mouse NP95 SRA domain DNA specific complex 1 | X-ray diffraction | 2.19 | 26 | 2008-09-09 | ||||
| 45 | 1GD2|1|A+ 1GD2|1|B | DNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3') | CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA | X-ray diffraction | 2 | 26 | 2000-10-02 | ||||
| 46 | 1GD2|1|C+ 1GD2|1|D | DNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3') | CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA | X-ray diffraction | 2 | 26 | 2000-10-02 | ||||
| 47 | 1J1V|1|B+ 1J1V|1|C | 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3', 5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3' | Crystal structure of DnaA domainIV complexed with DnaAbox DNA | X-ray diffraction | 2.1 | 26 | 2003-04-22 | ||||
| 48 | 1WTE|1|X+ 1WTE|1|Y | 5'-D(*AP*CP*CP*GP*GP*GP*CP*CP*CP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*GP*GP*GP*CP*CP*CP*GP*GP*T)-3' | Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNA | X-ray diffraction | 1.9 | 26 | 2004-12-14 | ||||
| 49 | 2HHX|1|C+ 2HHX|1|B | 5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*G)-3' | O6-methyl-guanine in the polymerase template preinsertion site | X-ray diffraction | 2.26 | 19 | 2006-12-12 | ||||
| 50 | 3A46|1|C+ 3A46|1|D | DNA | Crystal structure of MvNei1/THF complex | X-ray diffraction | 2.2 | 26 | 2009-07-21 | ||||
| 51 | 3A46|1|E+ 3A46|1|F | DNA | Crystal structure of MvNei1/THF complex | X-ray diffraction | 2.2 | 26 | 2009-07-21 | ||||
| 52 | 3GV5|1|F+ 3GV5|1|E | 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3' | Human DNA polymerase iota in complex with T template DNA and incoming ddADP | X-ray diffraction | 2 | 22 | 2009-06-02 | ||||
| 53 | 3GV5|1|T+ 3GV5|1|P | 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3' | Human DNA polymerase iota in complex with T template DNA and incoming ddADP | X-ray diffraction | 2 | 22 | 2009-06-02 | ||||
| 54 | 3G0R|1|G+ 3G0R|1|K | 5'-D(*CP*CP*CP*TP*GP*UP*GP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*CP*GP*CP*AP*GP*GP*GP*CP*G)-3' | Complex of Mth0212 and an 8bp dsDNA with distorted ends | X-ray diffraction | 2.4 | 21 | 2010-03-09 | ||||
| 55 | 3BTY|1|B+ 3BTY|1|C | DNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3') | Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active site | X-ray diffraction | 2.35 | 26 | 2008-04-22 | ||||
| 56 | 1PP7|1|E+ 1PP7|1|F | FERREDOXIN INR | Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin Inr | X-ray diffraction | 2.45 | 25 | 2003-11-18 | ||||
| 57 | 1U8B|1|E+ 1U8B|1|D | 5'-D(*AP*AP*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*T)-3', 5'-D(P*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*AP*T)-3' | Crystal structure of the methylated N-ADA/DNA complex | X-ray diffraction | 2.1 | 24 | 2005-10-11 | ||||
| 58 | 1YQM|1|B+ 1YQM|1|C | 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(7GU)P*GP*TP*CP*TP*AP*C)-3' | Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNA | X-ray diffraction | 2.5 | 25 | 2005-04-05 | ||||
| 59 | 3OS0|1|t | DNA (5'-D(*CP*CP*CP*GP*AP*G*GP*CP*AP*CP*GP*TP*G)-3') | PFV strand transfer complex (STC) at 2.81 A resolution | X-ray diffraction | 2.81 | 0 | 2010-11-17 | ||||
| 60 | 2FCC|1|C+ 2FCC|1|D | DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3') | Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site | X-ray diffraction | 2.3 | 25 | 2006-10-03 | ||||
| 61 | 2FCC|1|E+ 2FCC|1|F | DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3') | Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site | X-ray diffraction | 2.3 | 25 | 2006-10-03 | ||||
| 62 | 3GFI|1|D+ 3GFI|1|E | 5'-D(*TP*AP*AP*CP*AP*AP*TP*AP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*GP*CP*TP*AP*TP*TP*GP*T)-3' | Crystal structure of ST1710 complexed with its promoter DNA | X-ray diffraction | 2.1 | 23 | 2009-08-25 | ||||
| 63 | 1Y6F|1|C+ 1Y6F|1|D | 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(3DR)P*AP*GP*AP*TP*AP*G)-3' | alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic site | X-ray diffraction | 2.4 | 26 | 2005-08-30 | ||||
| 64 | 1SXP|1|C+ 1SXP|1|D | 5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3' | BGT in complex with a 13mer DNA containing a central A:G mismatch | X-ray diffraction | 2.5 | 24 | 2004-06-22 | ||||
| 65 | 2UYH|1|C+ 2UYH|1|D | 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3', 5'-D(*TP*GP*GP*AP*TP*G*5CMP*GP*CP*TP*GP *AP*C)-3' | HhaI DNA methyltransferase S87Q-Q237S mutant complex with 13mer GCGC- GMGC oligonucleotide and SAH | X-ray diffraction | 2.63 | 25 | 2008-05-27 | ||||
| 66 | 1YQL|1|B+ 1YQL|1|C | 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*CP*AP*(PPW)P*GP*TP*CP*TP*AP*C)-3' | Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNA | X-ray diffraction | 2.6 | 25 | 2005-04-05 | ||||
| 67 | 3BTZ|1|B+ 3BTZ|1|C | DNA (5'-D(*AP*GP*GP*TP*GP*AP*(2YR)P*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DTP*DTP*DAP*DTP*DCP*DAP*DCP*DC)-3') | Crystal structure of human ABH2 cross-linked to dsDNA | X-ray diffraction | 3 | 26 | 2008-04-22 | ||||
| 68 | 3BU0|1|B+ 3BU0|1|C | DNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3') | crystal structure of human ABH2 cross-linked to dsDNA with cofactors | X-ray diffraction | 2.5 | 26 | 2008-04-22 | ||||
| 69 | 2HVH|1|C+ 2HVH|1|B | 5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddCTP:O6MeG pair in the polymerase active site (0 position) | X-ray diffraction | 2.492 | 20 | 2006-12-12 | ||||
| 70 | 2HVH|1|F+ 2HVH|1|E | 5'-D(*CP*A*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | ddCTP:O6MeG pair in the polymerase active site (0 position) | X-ray diffraction | 2.492 | 20 | 2006-12-12 | ||||
| 71 | 2R9L|1|F+ 2R9L|1|E | DNA (5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DAP*DCP*DGP*DCP*DAP*DCP*DG)-3'), DNA (5'-D(P*DGP*DCP*DGP*DGP*DC)-3') | synthetic construct | Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA | X-ray diffraction | 2.4 | 0 | 2008-01-08 | |||
| 72 | 1KFV|1|D+ 1KFV|1|E | 5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3', 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3' | Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA. | X-ray diffraction | 2.55 | 25 | 2002-06-14 | ||||
| 73 | 1KFV|1|G+ 1KFV|1|H | 5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3', 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3' | Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA. | X-ray diffraction | 2.55 | 25 | 2002-06-14 | ||||
| 74 | 1IXY|1|C+ 1IXY|1|E | 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3' | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-ray diffraction | 2.5 | 26 | 2002-12-04 | ||||
| 75 | 1IXY|1|D+ 1IXY|1|F | 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*3DRP*AP*GP*AP*TP*AP*G)-3' | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-ray diffraction | 2.5 | 26 | 2002-12-04 | ||||
| 76 | 2UZK|1|B+ 2UZK|1|E | 5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3' | Homo sapiens | Crystal structure of the human FOXO3a-DBD bound to DNA | X-ray diffraction | 2.7 | 26 | 2008-05-13 | |||
| 77 | 2UZK|1|D+ 2UZK|1|F | 5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3' | Homo sapiens | Crystal structure of the human FOXO3a-DBD bound to DNA | X-ray diffraction | 2.7 | 26 | 2008-05-13 | |||
| 78 | 3BUC|1|B+ 3BUC|1|C | DNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DGP*DTP*DTP*DAP*DTP*DAP*DCP*DA)-3') | X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KG | X-ray diffraction | 2.59 | 26 | 2008-04-22 | ||||
| 79 | 1Y6G|1|C+ 1Y6G|1|D | 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*T)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3' | alpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolution | X-ray diffraction | 2.8 | 25 | 2005-08-30 | ||||
| 80 | 1CS7|1|A | 5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3' | SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER | X-ray diffraction | 3.2 | 12 | 2001-10-19 | ||||
| 81 | 1CS7|1|B | 5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3' | SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER | X-ray diffraction | 3.2 | 12 | 2001-10-19 | ||||
| 82 | 1CS7|1|C | 5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3' | SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER | X-ray diffraction | 3.2 | 12 | 2001-10-19 | ||||
| 83 | 1CS7|1|D | 5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3' | SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER | X-ray diffraction | 3.2 | 12 | 2001-10-19 | ||||
| 84 | 2GIE|1|E+ 2GIE|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*G)-3' | HincII bound to cognate DNA GTTAAC | X-ray diffraction | 2.6 | 26 | 2006-07-18 | ||||
| 85 | 2GIE|1|G+ 2GIE|1|H | 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*G)-3' | HincII bound to cognate DNA GTTAAC | X-ray diffraction | 2.6 | 26 | 2006-07-18 | ||||
| 86 | 3GX4|1|Y+ 3GX4|1|Z | DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3') | Crystal Structure Analysis of S. Pombe ATL in complex with DNA | X-ray diffraction | 2.7 | 26 | 2009-06-09 | ||||
| 87 | 3KOV|1|C+ 3KOV|1|D | DNA (5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3') | Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factors | X-ray diffraction | 2.9 | 26 | 2010-02-16 | ||||
| 88 | 3KOV|1|K+ 3KOV|1|L | DNA (5'-D(*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3') | Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factors | X-ray diffraction | 2.9 | 26 | 2010-02-16 | ||||
| 89 | 3GYH|1|Y+ 3GYH|1|Z | DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*GP*GP*CP*TP*AP*GP*TP*A)-3') | Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POB | X-ray diffraction | 2.8 | 26 | 2009-06-16 | ||||
| 90 | 1T38|1|B+ 1T38|1|C | 5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3', 5'-D(*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3' | HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE BOUND TO DNA CONTAINING O6-METHYLGUANINE | X-ray diffraction | 3.2 | 26 | 2004-07-13 | ||||
| 91 | 1T39|1|C+ 1T39|1|D | 5'-D(*GP*CP*CP*AP*TP*GP*(E1X)P*CP*TP*AP*GP*TP*A)-3', 5'-D(*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3' | HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNA | X-ray diffraction | 3.3 | 26 | 2004-07-13 | ||||
| 92 | 1T39|1|E+ 1T39|1|F | 5'-D(*GP*CP*CP*AP*TP*GP*(E1X)P*CP*TP*AP*GP*TP*A)-3', 5'-D(*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3' | HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNA | X-ray diffraction | 3.3 | 26 | 2004-07-13 | ||||
| 93 | 1K3X|1|B+ 1K3X|1|C | 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3' | Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNA | X-ray diffraction | 1.25 | 19 | 2002-10-04 | ||||
| 94 | 1K3W|1|B+ 1K3W|1|C | 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3' | Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA | X-ray diffraction | 1.42 | 18 | 2002-10-04 | ||||
| 95 | 1LLM|1|A+ 1LLM|1|B | 5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3' | Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA | X-ray diffraction | 1.5 | 26 | 2003-09-30 | ||||
| 96 | 1QUM|1|D+ 1QUM|1|C+ 1QUM|1|B | 5'-D(*(3DR)P*CP*GP*AP*CP*GP*A)-3', 5'-D(*CP*GP*TP*CP*C)-3', 5'-D(*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*G)-3' | CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNA | X-ray diffraction | 1.55 | 26 | 1999-08-31 | ||||
| 97 | 3PVI|1|C+ 3PVI|1|D | DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3') | D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSIS | X-ray diffraction | 1.59 | 26 | 1998-10-14 | ||||
| 98 | 1DC1|1|C+ 1DC1|1|W | DNA (5'-D(*T*AP*TP*AP*CP*TP*CP*GP*AP*GP*TP*AP*T)-3') | RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD | X-ray diffraction | 1.7 | 25 | 2001-02-21 | ||||
| 99 | 2PVI|1|C+ 2PVI|1|D | DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*(C38)P*TP*GP*GP*TP*C)-3') | PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNA | X-ray diffraction | 1.76 | 26 | 1999-12-20 | ||||
| 100 | 1EYU|1|C+ 1EYU|1|D | DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3') | HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6 | X-ray diffraction | 1.78 | 26 | 2000-07-21 | ||||
| 101 | 1CL8|1|B | DNA (5'-D(*TP*CP*GP*CP*GP*AP*(PRN)P*TP*TP*CP*GP*CP*G)-3') | A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P) | X-ray diffraction | 1.8 | 13 | 1999-05-19 | ||||
| 102 | 1A73|1|C+ 1A73|1|E+ 1A73|1|D+ 1A73|1|F | DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3') | INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNA | X-ray diffraction | 1.8 | 42 | 1998-10-14 | ||||
| 103 | 1CKQ|1|B | DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEX | X-ray diffraction | 1.85 | 13 | 1999-04-26 | ||||
| 104 | 2C7Q|1|C+ 2C7Q|1|D | 5'-D(*T*GP*GP*(2PR)*GP*GP*(5CM)*GP*CP*TP*GP* AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*CP*GP*CP*CP*GP*CP*C)-3' | synthetic construct | HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAH | X-ray diffraction | 1.85 | 25 | 2005-12-14 | |||
| 105 | 2C7O|1|C+ 2C7O|1|D | 5'-D(*T*GP*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP *C)-3', 5'-D(*T*GP*TP*CP*AP*(2PR)*CP*GP*CP*AP*TP*CP *C)-3' | synthetic construct | HhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAH | X-ray diffraction | 1.9 | 25 | 2005-12-14 | |||
| 106 | 2HR1|1|D+ 2HR1|1|C | 5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3' | Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy | X-ray diffraction | 1.96 | 25 | 2006-09-19 | ||||
| 107 | 1DUX|1|A+ 1DUX|1|B | DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3') | ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION | X-ray diffraction | 2.1 | 26 | 2000-04-17 | ||||
| 108 | 1DUX|1|D+ 1DUX|1|E | DNA (5'-D(*AP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*T)-3') | ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION | X-ray diffraction | 2.1 | 26 | 2000-04-17 | ||||
| 109 | 1K82|1|E+ 1K82|1|I | 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3' | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-ray diffraction | 2.1 | 25 | 2002-06-14 | ||||
| 110 | 1K82|1|F+ 1K82|1|J | 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3' | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-ray diffraction | 2.1 | 25 | 2002-06-14 | ||||
| 111 | 1K82|1|G+ 1K82|1|K | 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3' | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-ray diffraction | 2.1 | 25 | 2002-06-14 | ||||
| 112 | 1K82|1|H+ 1K82|1|L | 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3' | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-ray diffraction | 2.1 | 25 | 2002-06-14 | ||||
| 113 | 1MEY|1|A+ 1MEY|1|B | DNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*TP*(C38)P*A)-3') | CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA | X-ray diffraction | 2.2 | 26 | 1997-03-12 | ||||
| 114 | 1SKM|1|C+ 1SKM|1|D | 5'-D(*T*GP*TP*CP*AP*GP*(HCX)P*GP*CP*AP*TP*GP*G)-3', 5'-D(*TP*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3' | HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site | X-ray diffraction | 2.2 | 24 | 2004-08-24 | ||||
| 115 | 1MEY|1|D+ 1MEY|1|E | DNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*TP*(C38)P*A)-3') | CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA | X-ray diffraction | 2.2 | 26 | 1997-03-12 | ||||
| 116 | 1T7P|1|T+ 1T7P|1|P | DNA (5'-D(P*CP*CP*TP*TP*GP*GP*CP*AP*CP*TP*GP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*2DA)-3') | T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN | X-ray diffraction | 2.2 | 24 | 1998-02-25 | ||||
| 117 | 1FJX|1|C+ 1FJX|1|D | DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3') | STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCY | X-ray diffraction | 2.26 | 26 | 2000-12-15 | ||||
| 118 | 1YF3|1|C+ 1YF3|1|D | 5'-D(*AP*CP*CP*AP*TP*GP*AP*TP*CP*TP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*CP*AP*TP*GP*G)-3' | T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact | X-ray diffraction | 2.29 | 26 | 2005-05-17 | ||||
| 119 | 3KTU|1|B+ 3KTU|1|C | DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3') | synthetic construct | Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNA | X-ray diffraction | 2.3 | 25 | 2010-07-14 | |||
| 120 | 2KTQ|1|D+ 2KTQ|1|B | DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') | OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-ray diffraction | 2.3 | 25 | 1999-01-13 | ||||
| 121 | 1F4R|1|D+ 1F4R|1|E | DNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDA)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') | CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA | X-ray diffraction | 2.4 | 24 | 2000-12-11 | ||||
| 122 | 1F6O|1|D+ 1F6O|1|E | DNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') | CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNA | X-ray diffraction | 2.4 | 26 | 2000-12-11 | ||||
| 123 | 1ERI|1|B | DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGE | X-ray diffraction | 2.5 | 13 | 1995-02-07 | ||||
| 124 | 4KTQ|1|C+ 4KTQ|1|B | DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') | BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA | X-ray diffraction | 2.5 | 25 | 1999-01-13 | ||||
| 125 | 3E54|1|C+ 3E54|1|E+ 3E54|1|D+ 3E54|1|F | DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(P*DGP*DGP*DTP*DAP*DGP*DCP*DCP*DAP*DA)-3') | Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNA | X-ray diffraction | 2.5 | 44 | 2008-12-30 | ||||
| 126 | 1F0O|1|C+ 1F0O|1|D | (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3') | PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITE | X-ray diffraction | 2.5 | 26 | 2000-11-06 | ||||
| 127 | 1DIZ|1|C+ 1DIZ|1|D | DNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') | Escherichia coli | CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA | X-ray diffraction | 2.5 | 26 | 2000-03-20 | |||
| 128 | 1TX3|1|E+ 1TX3|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3' | HINCII BOUND TO COGNATE DNA | X-ray diffraction | 2.5 | 26 | 2005-02-15 | ||||
| 129 | 1DIZ|1|E+ 1DIZ|1|F | DNA (5'-D(*GP*AP*CP*AP*TP*GP*AP*(NRI)P*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') | Escherichia coli | CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA | X-ray diffraction | 2.5 | 26 | 2000-03-20 | |||
| 130 | 1TX3|1|G+ 1TX3|1|H | 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3' | HINCII BOUND TO COGNATE DNA | X-ray diffraction | 2.5 | 26 | 2005-02-15 | ||||
| 131 | 1QRH|1|M | 5'-(TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G*)-3' | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 A | X-ray diffraction | 2.5 | 13 | 1999-06-23 | ||||
| 132 | 1D31|1|A+ 1D31|1|B | DNA (5'-D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTS | X-ray diffraction | 2.6 | 26 | 1992-04-15 | ||||
| 133 | 2OQ4|1|C+ 2OQ4|1|D | 5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3' | Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrate | X-ray diffraction | 2.6 | 22 | 2008-02-26 | ||||
| 134 | 1PVI|1|C+ 1PVI|1|D | DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3') | STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNA | X-ray diffraction | 2.6 | 26 | 1995-02-14 | ||||
| 135 | 1MHT|1|C+ 1MHT|1|B | DNA (5'-D(*TP*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3') | COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINE | X-ray diffraction | 2.6 | 25 | 1995-06-03 | ||||
| 136 | 2OQ4|1|E+ 2OQ4|1|F | 5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3' | Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrate | X-ray diffraction | 2.6 | 19 | 2008-02-26 | ||||
| 137 | 1QRI|1|M | 5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 A | X-ray diffraction | 2.6 | 13 | 1999-06-23 | ||||
| 138 | 2I9K|1|C+ 2I9K|1|D | 5'-D(*T*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3' | Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaI | X-ray diffraction | 2.65 | 25 | 2006-10-10 | ||||
| 139 | 3MHT|1|D+ 3MHT|1|C | DNA (5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3') | TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCY | X-ray diffraction | 2.7 | 25 | 1997-01-27 | ||||
| 140 | 1BNK|1|D+ 1BNK|1|E | DNA (5'-D(*GP*AP*CP*AP*TP*GP*YRRP*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') | HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA | X-ray diffraction | 2.7 | 26 | 1998-10-21 | ||||
| 141 | 4MHT|1|D+ 4MHT|1|C | DNA (5'-D(*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*(5CM)P*GP*CP*TP*AP*TP*C)-3') | TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCY | X-ray diffraction | 2.7 | 25 | 1997-01-27 | ||||
| 142 | 2Z6U|1|D+ 2Z6U|1|C | DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3') | Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy | X-ray diffraction | 2.72 | 25 | 2007-11-20 | ||||
| 143 | 1VAS|1|B+ 1VAS|1|C | DNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3') | ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION | X-ray diffraction | 2.75 | 26 | 1996-01-31 | ||||
| 144 | 2ZCJ|1|D+ 2ZCJ|1|C | DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3') | Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy | X-ray diffraction | 2.75 | 25 | 2007-12-04 | ||||
| 145 | 2PIS|1|A+ 2PIS|1|B | DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3') | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-ray diffraction | 2.8 | 26 | 2007-10-30 | ||||
| 146 | 2PIS|1|C+ 2PIS|1|D | DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3') | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-ray diffraction | 2.8 | 26 | 2007-10-30 | ||||
| 147 | 2PIS|1|E+ 2PIS|1|F | DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3') | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-ray diffraction | 2.8 | 26 | 2007-10-30 | ||||
| 148 | 1TW8|1|E+ 1TW8|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3' | HincII bound to Ca2+ and cognate DNA GTCGAC | X-ray diffraction | 2.8 | 26 | 2004-08-10 | ||||
| 149 | 1TW8|1|G+ 1TW8|1|H | 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3' | HincII bound to Ca2+ and cognate DNA GTCGAC | X-ray diffraction | 2.8 | 26 | 2004-08-10 | ||||
| 150 | 2PIS|1|G+ 2PIS|1|H | DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3') | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-ray diffraction | 2.8 | 26 | 2007-10-30 | ||||
| 151 | 2PIS|1|I+ 2PIS|1|J | DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3') | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-ray diffraction | 2.8 | 26 | 2007-10-30 | ||||
| 152 | 2PIS|1|K+ 2PIS|1|L | DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3') | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-ray diffraction | 2.8 | 26 | 2007-10-30 | ||||
| 153 | 1ODH|1|C+ 1ODH|1|D | 5'-D(*CP*GP*AP*TP*GP*CP*GP*GP*GP*TP *GP*CP*A)-3', 5'-D(*TP*GP*CP*AP*CP*CP*CP*GP*CP*AP *TP*CP*G)-3' | Structure of the GCM domain bound to DNA | X-ray diffraction | 2.85 | 26 | 2003-04-08 | ||||
| 154 | 2Z6A|1|D+ 2Z6A|1|C | DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3') | synthetic construct | S-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine Methylation | X-ray diffraction | 2.88 | 25 | 2007-08-21 | |||
| 155 | 1ZJG|1|A+ 1ZJG|1|B | 5'-D(*AP*TP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*CP*CP*CP*GP*CP*CP*CP*CP*A)-3' | 13mer-co | X-ray diffraction | 3 | 26 | 2005-05-10 | ||||
| 156 | 1C7Y|1|B | DNA (5'-D(P*DAP*DAP*DGP*DTP*DTP*DGP*DGP*DGP*DAP*DTP*DTP*DGP*DT)-3') | E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX | X-ray diffraction | 3.1 | 13 | 2000-07-21 | ||||
| 157 | 1C7Y|1|D+ 1C7Y|1|C | DNA (5'-D(P*DCP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DAP*DAP*DGP*DC)-3'), DNA (5'-D(P*DGP*DCP*DTP*DTP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DGP*DA)-3') | E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX | X-ray diffraction | 3.1 | 25 | 2000-07-21 | ||||
| 158 | 1C7Y|1|F+ 1C7Y|1|E | DNA (5'-D(P*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DGP*DAP*DA)-3'), DNA (5'-D(P*DTP*DTP*DCP*DAP*DCP*DCP*DCP*DTP*DAP*DAP*DCP*DCP*DA)-3') | E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX | X-ray diffraction | 3.1 | 25 | 2000-07-21 | ||||
| 159 | 1C7Y|1|H+ 1C7Y|1|G | DNA (5'-D(P*DCP*DGP*DAP*DAP*DTP*DGP*DTP*DGP*DTP*DGP*DTP*DCP*DT)-3'), DNA (5'-D(P*DGP*DAP*DCP*DAP*DCP*DAP*DCP*DAP*DTP*DTP*DCP*DG)-3') | E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX | X-ray diffraction | 3.1 | 25 | 2000-07-21 | ||||
| 160 | 2GXA|1|M | 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of papillomavirus E1 hexameric helicase with ssDNA and MgADP | X-ray diffraction | 3.15 | 6 | 2006-07-25 | ||||
| 161 | 2GXA|1|N | 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of papillomavirus E1 hexameric helicase with ssDNA and MgADP | X-ray diffraction | 3.15 | 7 | 2006-07-25 | ||||
| 162 | 2F55|1|D | 5'-D(P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU)P*(DU))-3' | Two hepatitis c virus ns3 helicase domains complexed with the same strand of dna | X-ray diffraction | 3.3 | 13 | 2005-12-06 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 2F55|1|D | Two hepatitis c virus ns3 helicase domains complexed with the same strand of dna | X-RAY DIFFRACTION | 3.3 | 13 | enzyme,helicase,hydrolase | ||
| 2 | 2R9L|1|F+ 2R9L|1|E | Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA | X-RAY DIFFRACTION | 2.4 | 0 | B-form double helix,double helix,structure | enzyme,ligase | |
| 3 | 1TW8|1|G+ 1TW8|1|H | HincII bound to Ca2+ and cognate DNA GTCGAC | X-RAY DIFFRACTION | 2.8 | 26 | enzyme,hydrolase,nuclease | ||
| 4 | 2GIE|1|G+ 2GIE|1|H | HincII bound to cognate DNA GTTAAC | X-RAY DIFFRACTION | 2.6 | 26 | enzyme,hydrolase,nuclease | ||
| 5 | 2GIE|1|E+ 2GIE|1|F | HincII bound to cognate DNA GTTAAC | X-RAY DIFFRACTION | 2.6 | 26 | enzyme,hydrolase,nuclease | ||
| 6 | 1TW8|1|E+ 1TW8|1|F | HincII bound to Ca2+ and cognate DNA GTCGAC | X-RAY DIFFRACTION | 2.8 | 26 | enzyme,hydrolase,nuclease | ||
| 7 | 1TX3|1|E+ 1TX3|1|F | HINCII BOUND TO COGNATE DNA | X-RAY DIFFRACTION | 2.5 | 26 | enzyme,hydrolase,nuclease | ||
| 8 | 1TX3|1|G+ 1TX3|1|H | HINCII BOUND TO COGNATE DNA | X-RAY DIFFRACTION | 2.5 | 26 | enzyme,hydrolase,nuclease | ||
| 9 | 1VAS|1|B+ 1VAS|1|C | ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION | X-RAY DIFFRACTION | 2.75 | 26 | enzyme,hydrolase,nuclease | ||
| 10 | 2FCC|1|E+ 2FCC|1|F | Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site | X-RAY DIFFRACTION | 2.3 | 25 | double helix,structure | enzyme,hydrolase,nuclease | |
| 11 | 2FCC|1|C+ 2FCC|1|D | Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site | X-RAY DIFFRACTION | 2.3 | 25 | double helix,structure | enzyme,hydrolase,nuclease | |
| 12 | 3O1V|1|C+ 3O1V|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.9 | 25 | enzyme,oxidoreductase | ||
| 13 | 3O1R|1|C+ 3O1R|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.77 | 25 | enzyme,oxidoreductase | ||
| 14 | 3O1U|1|C+ 3O1U|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.54 | 25 | enzyme,oxidoreductase | ||
| 15 | 3O1T|1|C+ 3O1T|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.48 | 25 | enzyme,oxidoreductase | ||
| 16 | 3O1S|1|C+ 3O1S|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.58 | 25 | enzyme,oxidoreductase | ||
| 17 | 3BIE|1|C+ 3BIE|1|B | X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KG | X-RAY DIFFRACTION | 1.68 | 25 | enzyme,oxidoreductase | ||
| 18 | 3BI3|1|B+ 3BI3|1|C | X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactors | X-RAY DIFFRACTION | 1.9 | 25 | enzyme,oxidoreductase | ||
| 19 | 3O1P|1|B+ 3O1P|1|C | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.51 | 25 | enzyme,oxidoreductase | ||
| 20 | 3O1M|1|B+ 3O1M|1|C | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.75 | 25 | enzyme,oxidoreductase | ||
| 21 | 3O1O|1|B+ 3O1O|1|C | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.92 | 25 | enzyme,oxidoreductase | ||
| 22 | 3BKZ|1|B+ 3BKZ|1|C | X-ray structure of E coli AlkB crosslinked to dsDNA in the active site | X-RAY DIFFRACTION | 1.65 | 26 | B-form double helix,double helix,feature,mispair,structure | enzyme,oxidoreductase | |
| 23 | 1Y8Z|1|C+ 1Y8Z|1|D | alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolution | X-RAY DIFFRACTION | 1.9 | 22 | enzyme,transferase | ||
| 24 | 1M5R|1|C+ 1M5R|1|E | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-RAY DIFFRACTION | 1.8 | 26 | enzyme,transferase | ||
| 25 | 1IXY|1|C+ 1IXY|1|E | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-RAY DIFFRACTION | 2.5 | 26 | enzyme,transferase | ||
| 26 | 1IXY|1|D+ 1IXY|1|F | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-RAY DIFFRACTION | 2.5 | 26 | enzyme,transferase | ||
| 27 | 1SXP|1|C+ 1SXP|1|D | BGT in complex with a 13mer DNA containing a central A:G mismatch | X-RAY DIFFRACTION | 2.5 | 24 | enzyme,transferase | ||
| 28 | 1M5R|1|D+ 1M5R|1|F | Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex | X-RAY DIFFRACTION | 1.8 | 26 | enzyme,transferase | ||
| 29 | 1Y6F|1|C+ 1Y6F|1|D | alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic site | X-RAY DIFFRACTION | 2.4 | 26 | enzyme,transferase | ||
| 30 | 1Y6G|1|C+ 1Y6G|1|D | alpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolution | X-RAY DIFFRACTION | 2.8 | 25 | enzyme,transferase | ||
| 31 | 1A73|1|C+ 1A73|1|E+ 1A73|1|D+ 1A73|1|F | INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNA | X-RAY DIFFRACTION | 1.8 | 42 | double helix,structure | enzyme,hydrolase,nuclease | |
| 32 | 1WTE|1|X+ 1WTE|1|Y | Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNA | X-RAY DIFFRACTION | 1.9 | 26 | double helix,structure | enzyme,hydrolase,nuclease | |
| 33 | 3PVI|1|C+ 3PVI|1|D | D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSIS | X-RAY DIFFRACTION | 1.59 | 26 | double helix,structure | enzyme,hydrolase,nuclease | |
| 34 | 2PVI|1|C+ 2PVI|1|D | PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNA | X-RAY DIFFRACTION | 1.76 | 26 | double helix,structure | enzyme,hydrolase,nuclease | |
| 35 | 1PVI|1|C+ 1PVI|1|D | STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNA | X-RAY DIFFRACTION | 2.6 | 26 | double helix,structure | enzyme,hydrolase,nuclease | |
| 36 | 1F0O|1|C+ 1F0O|1|D | PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITE | X-RAY DIFFRACTION | 2.5 | 26 | double helix,structure | enzyme,hydrolase,nuclease | |
| 37 | 1EYU|1|C+ 1EYU|1|D | HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6 | X-RAY DIFFRACTION | 1.78 | 26 | double helix,structure | enzyme,hydrolase,nuclease | |
| 38 | 1CL8|1|B | A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P) | X-RAY DIFFRACTION | 1.8 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 39 | 1CKQ|1|B | PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEX | X-RAY DIFFRACTION | 1.85 | 13 | double helix,structure | enzyme,hydrolase,nuclease | |
| 40 | 1QRI|1|M | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN E144D MUTATION AT 2.7 A | X-RAY DIFFRACTION | 2.6 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 41 | 1ERI|1|B | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGE | X-RAY DIFFRACTION | 2.5 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 42 | 1QRH|1|M | X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE COMPLEXES WITH AN R145K MUTATION AT 2.7 A | X-RAY DIFFRACTION | 2.5 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 43 | 2OXV|1|C | Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site. | X-RAY DIFFRACTION | 1.95 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 44 | 1DC1|1|C+ 1DC1|1|W | RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD | X-RAY DIFFRACTION | 1.7 | 25 | double helix,structure | enzyme,hydrolase,nuclease | |
| 45 | 2PIS|1|E+ 2PIS|1|F | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-RAY DIFFRACTION | 2.8 | 26 | B-form double helix,double helix,structure | ||
| 46 | 2PIS|1|C+ 2PIS|1|D | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-RAY DIFFRACTION | 2.8 | 26 | B-form double helix,double helix,structure | ||
| 47 | 1SXQ|1|C+ 1SXQ|1|E | BGT in complex with a 13mer DNA containing a central C:G base pair and UDP | X-RAY DIFFRACTION | 1.8 | 26 | B-form double helix,double helix,structure | enzyme,transferase | |
| 48 | 1SXQ|1|D+ 1SXQ|1|F | BGT in complex with a 13mer DNA containing a central C:G base pair and UDP | X-RAY DIFFRACTION | 1.8 | 26 | B-form double helix,double helix,structure | enzyme,transferase | |
| 49 | 3GFI|1|D+ 3GFI|1|E | Crystal structure of ST1710 complexed with its promoter DNA | X-RAY DIFFRACTION | 2.1 | 23 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 50 | 3G0R|1|G+ 3G0R|1|K | Complex of Mth0212 and an 8bp dsDNA with distorted ends | X-RAY DIFFRACTION | 2.4 | 21 | B-form double helix,double helix,feature,mispair,structure | enzyme,hydrolase,nuclease | |
| 51 | 3E54|1|C+ 3E54|1|E+ 3E54|1|D+ 3E54|1|F | Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNA | X-RAY DIFFRACTION | 2.5 | 44 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 52 | 3E6C|1|A+ 3E6C|1|B | CprK OCPA DNA Complex | X-RAY DIFFRACTION | 1.8 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 53 | 1LLM|1|A+ 1LLM|1|B | Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA | X-RAY DIFFRACTION | 1.5 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 54 | 1J1V|1|B+ 1J1V|1|C | Crystal structure of DnaA domainIV complexed with DnaAbox DNA | X-RAY DIFFRACTION | 2.1 | 26 | B-form double helix,double helix,structure | DNA replication/repair,regulatory | |
| 55 | 1U8B|1|E+ 1U8B|1|D | Crystal structure of the methylated N-ADA/DNA complex | X-RAY DIFFRACTION | 2.1 | 24 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription | |
| 56 | 1PP7|1|E+ 1PP7|1|F | Crystal structure of the T. vaginalis Initiator binding protein bound to the ferredoxin Inr | X-RAY DIFFRACTION | 2.45 | 25 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 57 | 2KTQ|1|D+ 2KTQ|1|B | OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS | X-RAY DIFFRACTION | 2.3 | 25 | enzyme,polymerase,transferase | ||
| 58 | 4KTQ|1|C+ 4KTQ|1|B | BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA | X-RAY DIFFRACTION | 2.5 | 25 | double helix,structure | enzyme,polymerase,transferase | |
| 59 | 1MEY|1|A+ 1MEY|1|B | CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA | X-RAY DIFFRACTION | 2.2 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 60 | 1MEY|1|D+ 1MEY|1|E | CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA | X-RAY DIFFRACTION | 2.2 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 61 | 1ODH|1|C+ 1ODH|1|D | Structure of the GCM domain bound to DNA | X-RAY DIFFRACTION | 2.85 | 26 | B-form double helix,double helix,structure | regulatory,transcription | |
| 62 | 1DUX|1|D+ 1DUX|1|E | ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION | X-RAY DIFFRACTION | 2.1 | 26 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 63 | 1DUX|1|A+ 1DUX|1|B | ELK-1/DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-BINDING SURFACE AFFECT DNA-RECOGNITION | X-RAY DIFFRACTION | 2.1 | 26 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 64 | 1YO5|1|A+ 1YO5|1|B | Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory site | X-RAY DIFFRACTION | 2 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 65 | 1C7Y|1|D+ 1C7Y|1|C | E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX | X-RAY DIFFRACTION | 3.1 | 25 | enzyme,helicase,hydrolase | ||
| 66 | 1C7Y|1|H+ 1C7Y|1|G | E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX | X-RAY DIFFRACTION | 3.1 | 25 | enzyme,helicase,hydrolase | ||
| 67 | 1C7Y|1|F+ 1C7Y|1|E | E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX | X-RAY DIFFRACTION | 3.1 | 25 | enzyme,helicase,hydrolase | ||
| 68 | 1C7Y|1|B | E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX | X-RAY DIFFRACTION | 3.1 | 13 | enzyme,helicase,hydrolase | ||
| 69 | 2UZK|1|D+ 2UZK|1|F | Crystal structure of the human FOXO3a-DBD bound to DNA | X-RAY DIFFRACTION | 2.7 | 26 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 70 | 2UZK|1|B+ 2UZK|1|E | Crystal structure of the human FOXO3a-DBD bound to DNA | X-RAY DIFFRACTION | 2.7 | 26 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 71 | 3L2C|1|B+ 3L2C|1|C | Crystal Structure of the DNA Binding Domain of FOXO4 Bound to DNA | X-RAY DIFFRACTION | 1.868 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 72 | 1YF3|1|C+ 1YF3|1|D | T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact | X-RAY DIFFRACTION | 2.29 | 26 | enzyme,methylase,transferase | ||
| 73 | 3KOV|1|C+ 3KOV|1|D | Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factors | X-RAY DIFFRACTION | 2.9 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription | |
| 74 | 3KOV|1|K+ 3KOV|1|L | Structure of MEF2A bound to DNA reveals a completely folded MADS-box/MEF2 domain that recognizes DNA and recruits transcription co-factors | X-RAY DIFFRACTION | 2.9 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription | |
| 75 | 1GD2|1|C+ 1GD2|1|D | CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA | X-RAY DIFFRACTION | 2 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 76 | 1GD2|1|A+ 1GD2|1|B | CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA | X-RAY DIFFRACTION | 2 | 26 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 77 | 3OHA|1|T+ 3OHA|1|P | Yeast DNA polymerase eta inserting dCTP opposite an 8oxoG lesion | X-RAY DIFFRACTION | 2 | 24 | double helix,structure | enzyme,polymerase,transferase | |
| 78 | 2GXA|1|N | Crystal structure of papillomavirus E1 hexameric helicase with ssDNA and MgADP | X-RAY DIFFRACTION | 3.15 | 7 | DNA replication/repair,enzyme,helicase,hydrolase,regulatory | ||
| 79 | 2GXA|1|M | Crystal structure of papillomavirus E1 hexameric helicase with ssDNA and MgADP | X-RAY DIFFRACTION | 3.15 | 6 | DNA replication/repair,enzyme,helicase,hydrolase,regulatory | ||
| 80 | 1MHT|1|C+ 1MHT|1|B | COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINE | X-RAY DIFFRACTION | 2.6 | 25 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 81 | 3MHT|1|D+ 3MHT|1|C | TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCY | X-RAY DIFFRACTION | 2.7 | 25 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 82 | 4MHT|1|D+ 4MHT|1|C | TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH NATIVE DNA AND ADOHCY | X-RAY DIFFRACTION | 2.7 | 25 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 83 | 2ZCJ|1|D+ 2ZCJ|1|C | Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy | X-RAY DIFFRACTION | 2.75 | 25 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 84 | 2Z6U|1|D+ 2Z6U|1|C | Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy | X-RAY DIFFRACTION | 2.72 | 25 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 85 | 2HR1|1|D+ 2HR1|1|C | Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy | X-RAY DIFFRACTION | 1.96 | 25 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 86 | 2Z6A|1|D+ 2Z6A|1|C | S-Adenosyl-L-methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates during DNA Cytosine Methylation | X-RAY DIFFRACTION | 2.88 | 25 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 87 | 1T39|1|C+ 1T39|1|D | HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNA | X-RAY DIFFRACTION | 3.3 | 26 | double helix,structure | enzyme,methylase,transferase | |
| 88 | 1T39|1|E+ 1T39|1|F | HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNA | X-RAY DIFFRACTION | 3.3 | 26 | double helix,structure | enzyme,methylase,transferase | |
| 89 | 1T38|1|B+ 1T38|1|C | HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE BOUND TO DNA CONTAINING O6-METHYLGUANINE | X-RAY DIFFRACTION | 3.2 | 26 | double helix,structure | enzyme,methylase,transferase | |
| 90 | 3GX4|1|Y+ 3GX4|1|Z | Crystal Structure Analysis of S. Pombe ATL in complex with DNA | X-RAY DIFFRACTION | 2.7 | 26 | DNA replication/repair,regulatory | ||
| 91 | 3GYH|1|Y+ 3GYH|1|Z | Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POB | X-RAY DIFFRACTION | 2.8 | 26 | DNA replication/repair,regulatory | ||
| 92 | 1F6O|1|D+ 1F6O|1|E | CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNA | X-RAY DIFFRACTION | 2.4 | 26 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 93 | 1BNK|1|D+ 1BNK|1|E | HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA | X-RAY DIFFRACTION | 2.7 | 26 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 94 | 1F4R|1|D+ 1F4R|1|E | CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA | X-RAY DIFFRACTION | 2.4 | 24 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 95 | 3BTZ|1|B+ 3BTZ|1|C | Crystal structure of human ABH2 cross-linked to dsDNA | X-RAY DIFFRACTION | 3 | 26 | B-form double helix,double helix,structure | enzyme,oxidoreductase | |
| 96 | 3H8X|1|B+ 3H8X|1|C | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-RAY DIFFRACTION | 1.95 | 26 | enzyme,oxidoreductase | ||
| 97 | 3KTU|1|B+ 3KTU|1|C | Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNA | X-RAY DIFFRACTION | 2.3 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 98 | 1YQM|1|B+ 1YQM|1|C | Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNA | X-RAY DIFFRACTION | 2.5 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 99 | 1YQL|1|B+ 1YQL|1|C | Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNA | X-RAY DIFFRACTION | 2.6 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 100 | 1KFV|1|G+ 1KFV|1|H | Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA. | X-RAY DIFFRACTION | 2.55 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 101 | 1KFV|1|D+ 1KFV|1|E | Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA. | X-RAY DIFFRACTION | 2.55 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 102 | 1QUM|1|D+ 1QUM|1|C+ 1QUM|1|B | CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNA | X-RAY DIFFRACTION | 1.55 | 26 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 103 | 1DIZ|1|E+ 1DIZ|1|F | CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA | X-RAY DIFFRACTION | 2.5 | 26 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 104 | 1DIZ|1|C+ 1DIZ|1|D | CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA | X-RAY DIFFRACTION | 2.5 | 26 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 105 | 1K82|1|E+ 1K82|1|I | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-RAY DIFFRACTION | 2.1 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 106 | 1K82|1|F+ 1K82|1|J | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-RAY DIFFRACTION | 2.1 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 107 | 1K82|1|G+ 1K82|1|K | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-RAY DIFFRACTION | 2.1 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 108 | 1K82|1|H+ 1K82|1|L | Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA | X-RAY DIFFRACTION | 2.1 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 109 | 3A46|1|E+ 3A46|1|F | Crystal structure of MvNei1/THF complex | X-RAY DIFFRACTION | 2.2 | 26 | double helix,structure | enzyme,hydrolase | |
| 110 | 3A46|1|C+ 3A46|1|D | Crystal structure of MvNei1/THF complex | X-RAY DIFFRACTION | 2.2 | 26 | double helix,structure | enzyme,hydrolase | |
| 111 | 2OQ4|1|C+ 2OQ4|1|D | Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrate | X-RAY DIFFRACTION | 2.6 | 22 | double helix,structure | enzyme,hydrolase,nuclease | |
| 112 | 2OQ4|1|E+ 2OQ4|1|F | Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrate | X-RAY DIFFRACTION | 2.6 | 19 | double helix,structure | enzyme,hydrolase,nuclease | |
| 113 | 1K3X|1|B+ 1K3X|1|C | Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNA | X-RAY DIFFRACTION | 1.25 | 19 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 114 | 1K3W|1|B+ 1K3W|1|C | Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA | X-RAY DIFFRACTION | 1.42 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 115 | 2IRF|1|D+ 2IRF|1|C | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-RAY DIFFRACTION | 2.2 | 25 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 116 | 2IRF|1|F+ 2IRF|1|A | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-RAY DIFFRACTION | 2.2 | 25 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 117 | 2IRF|1|E+ 2IRF|1|B | CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX. | X-RAY DIFFRACTION | 2.2 | 24 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 118 | 1D31|1|A+ 1D31|1|B | THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTS | X-RAY DIFFRACTION | 2.6 | 26 | double helix,structure | ||
| 119 | 1OE5|1|F+ 1OE5|1|E | Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase | X-RAY DIFFRACTION | 2.3 | 25 | enzyme,hydrolase | ||
| 120 | 2PIS|1|G+ 2PIS|1|H | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-RAY DIFFRACTION | 2.8 | 26 | B-form double helix,double helix,structure | ||
| 121 | 2PIS|1|A+ 2PIS|1|B | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-RAY DIFFRACTION | 2.8 | 26 | B-form double helix,double helix,structure | ||
| 122 | 2PIS|1|I+ 2PIS|1|J | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-RAY DIFFRACTION | 2.8 | 26 | B-form double helix,double helix,structure | ||
| 123 | 1FJX|1|C+ 1FJX|1|D | STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCY | X-RAY DIFFRACTION | 2.26 | 26 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 124 | 2I9K|1|C+ 2I9K|1|D | Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaI | X-RAY DIFFRACTION | 2.65 | 25 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 125 | 2C7O|1|C+ 2C7O|1|D | HhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAH | X-RAY DIFFRACTION | 1.9 | 25 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 126 | 2UYC|1|C+ 2UYC|1|D | HhaI DNA methyltransferase R163N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAH | X-RAY DIFFRACTION | 2 | 25 | double helix,structure | enzyme,methylase,transferase | |
| 127 | 2UZ4|1|C+ 2UZ4|1|D | HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAH | X-RAY DIFFRACTION | 2.1 | 25 | double helix,structure | enzyme,methylase,transferase | |
| 128 | 1SKM|1|C+ 1SKM|1|D | HhaI methyltransferase in complex with DNA containing an abasic south carbocyclic sugar at its target site | X-RAY DIFFRACTION | 2.2 | 24 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 129 | 2UYH|1|C+ 2UYH|1|D | HhaI DNA methyltransferase S87Q-Q237S mutant complex with 13mer GCGC- GMGC oligonucleotide and SAH | X-RAY DIFFRACTION | 2.63 | 25 | enzyme,methylase,transferase | ||
| 130 | 2C7Q|1|C+ 2C7Q|1|D | HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAH | X-RAY DIFFRACTION | 1.85 | 25 | enzyme,methylase,transferase | ||
| 131 | 2ZO1|1|D+ 2ZO1|1|E | Mouse NP95 SRA domain DNA specific complex 2 | X-RAY DIFFRACTION | 1.96 | 21 | B-form double helix,double helix,structure | enzyme,ligase | |
| 132 | 2ZO0|1|D+ 2ZO0|1|E | mouse NP95 SRA domain DNA specific complex 1 | X-RAY DIFFRACTION | 2.19 | 26 | B-form double helix,double helix,structure | enzyme,ligase | |
| 133 | 1T7P|1|T+ 1T7P|1|P | T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN | X-RAY DIFFRACTION | 2.2 | 24 | double helix,structure | enzyme,oxidoreductase,polymerase,transferase | |
| 134 | 4BDP|1|T+ 4BDP|1|P | CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES | X-RAY DIFFRACTION | 1.8 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 135 | 3EYZ|1|C+ 3EYZ|1|B | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form) | X-RAY DIFFRACTION | 2.1 | 23 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 136 | 2PIS|1|K+ 2PIS|1|L | Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | X-RAY DIFFRACTION | 2.8 | 26 | B-form double helix,double helix,structure | ||
| 137 | 3I0X|1|C+ 3I0X|1|D | Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing adenine opposite to 8-oxoG | X-RAY DIFFRACTION | 1.8 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 138 | 3I0W|1|B+ 3I0W|1|C | Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoG | X-RAY DIFFRACTION | 1.73 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 139 | 1ZJG|1|A+ 1ZJG|1|B | 13mer-co | X-RAY DIFFRACTION | 3 | 26 | A-form double helix,double helix,structure | ||
| 140 | 3GV5|1|T+ 3GV5|1|P | Human DNA polymerase iota in complex with T template DNA and incoming ddADP | X-RAY DIFFRACTION | 2 | 22 | enzyme,polymerase,transferase | ||
| 141 | 3GV5|1|F+ 3GV5|1|E | Human DNA polymerase iota in complex with T template DNA and incoming ddADP | X-RAY DIFFRACTION | 2 | 22 | enzyme,polymerase,transferase | ||
| 142 | 2HHX|1|C+ 2HHX|1|B | O6-methyl-guanine in the polymerase template preinsertion site | X-RAY DIFFRACTION | 2.26 | 19 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 143 | 2HVH|1|C+ 2HVH|1|B | ddCTP:O6MeG pair in the polymerase active site (0 position) | X-RAY DIFFRACTION | 2.492 | 20 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 144 | 2HVH|1|F+ 2HVH|1|E | ddCTP:O6MeG pair in the polymerase active site (0 position) | X-RAY DIFFRACTION | 2.492 | 20 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 145 | 2HVI|1|C+ 2HVI|1|B | ddCTP:G pair in the polymerase active site (0 position) | X-RAY DIFFRACTION | 1.98 | 21 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 146 | 2HVI|1|F+ 2HVI|1|E | ddCTP:G pair in the polymerase active site (0 position) | X-RAY DIFFRACTION | 1.98 | 21 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 147 | 2HHW|1|C+ 2HHW|1|B | ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation | X-RAY DIFFRACTION | 1.88 | 20 | double helix,structure | enzyme,polymerase,transferase | |
| 148 | 2HHW|1|F+ 2HHW|1|E | ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation | X-RAY DIFFRACTION | 1.88 | 20 | double helix,structure | enzyme,polymerase,transferase | |
| 149 | 3MR2|1|T+ 3MR2|1|P | Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm) | X-RAY DIFFRACTION | 1.83 | 21 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 150 | 3H8O|1|B+ 3H8O|1|C | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-RAY DIFFRACTION | 2 | 26 | enzyme,oxidoreductase | ||
| 151 | 3BTX|1|B+ 3BTX|1|C | X-ray structure of human ABH2 bound to dsDNA through active site cross-linking | X-RAY DIFFRACTION | 2 | 26 | enzyme,oxidoreductase | ||
| 152 | 3BU0|1|B+ 3BU0|1|C | crystal structure of human ABH2 cross-linked to dsDNA with cofactors | X-RAY DIFFRACTION | 2.5 | 26 | enzyme,oxidoreductase | ||
| 153 | 3BTY|1|B+ 3BTY|1|C | Crystal structure of human ABH2 bound to dsDNA containing 1meA through cross-linking away from active site | X-RAY DIFFRACTION | 2.35 | 26 | enzyme,oxidoreductase | ||
| 154 | 3BUC|1|B+ 3BUC|1|C | X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KG | X-RAY DIFFRACTION | 2.59 | 26 | enzyme,oxidoreductase | ||
| 155 | 3H8R|1|B+ 3H8R|1|C | Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system | X-RAY DIFFRACTION | 1.77 | 26 | enzyme,oxidoreductase | ||
| 156 | 3OS0|1|t | PFV strand transfer complex (STC) at 2.81 A resolution | X-RAY DIFFRACTION | 2.81 | 0 | enzyme,recombinase | ||
| 157 | 1PUY|1|B | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-RAY DIFFRACTION | 1.5 | 12 | B-form double helix,double helix,structure | ||
| 158 | 1CS7|1|C | SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER | X-RAY DIFFRACTION | 3.2 | 12 | B-form double helix,double helix,structure | ||
| 159 | 1CS7|1|A | SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER | X-RAY DIFFRACTION | 3.2 | 12 | B-form double helix,double helix,structure | ||
| 160 | 1CS7|1|D | SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER | X-RAY DIFFRACTION | 3.2 | 12 | B-form double helix,double helix,structure | ||
| 161 | 1CS7|1|B | SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER | X-RAY DIFFRACTION | 3.2 | 12 | B-form double helix,double helix,structure | ||
| 162 | 1PUY|1|A | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-RAY DIFFRACTION | 1.5 | 12 | B-form double helix,double helix,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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