Equivalence class DNA_4.0_06327.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1ZS4|1|T+ 1ZS4|1|U (rep) | DNA - 27mer | Structure of bacteriophage lambda cII protein in complex with DNA | X-ray diffraction | 1.7 | 2005-08-23 | ||||
| 2 | 1K78|1|C+ 1K78|1|D | Pax5/Ets Binding Site on the mb-1 promoter | Pax5(1-149)+Ets-1(331-440)+DNA | X-ray diffraction | 2.25 | 2002-01-04 | ||||
| 3 | 1K78|1|G+ 1K78|1|H | Pax5/Ets Binding Site on the mb-1 promoter | Pax5(1-149)+Ets-1(331-440)+DNA | X-ray diffraction | 2.25 | 2002-01-04 | ||||
| 4 | 3GZ6|1|C+ 3GZ6|1|D | DNA (27-MER) | Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA | X-ray diffraction | 2.901 | 2009-06-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1K78|1|C+ 1K78|1|D | Pax5(1-149)+Ets-1(331-440)+DNA | X-RAY DIFFRACTION | 2.25 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription,winged helix/forkhead | |
| 2 | 1K78|1|G+ 1K78|1|H | Pax5(1-149)+Ets-1(331-440)+DNA | X-RAY DIFFRACTION | 2.25 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription,winged helix/forkhead | |
| 3 | 1ZS4|1|T+ 1ZS4|1|U | Structure of bacteriophage lambda cII protein in complex with DNA | X-RAY DIFFRACTION | 1.7 | 27 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | ||
| 4 | 3GZ6|1|C+ 3GZ6|1|D | Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA | X-RAY DIFFRACTION | 2.901 | 27 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: