Equivalence class DNA_4.0_07098.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2WQ7|1|C+ 2WQ7|1|D (rep) | 5'-D(*AP*CP*AP*GP*CP*GP*GP*TDYP*ZP*GP* CP*AP*AP*GP*T)-3', 5'-D(*TP*AP*CP*CP*TP*GP*CP*GP*AP*CP* CP*GP*CP*TP*G)-3' | Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(6-4)C lesion | X-ray diffraction | 2 | 2010-02-23 | ||||
| 2 | 3CVU|1|C+ 3CVU|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion | X-ray diffraction | 2 | 2008-11-04 | ||||
| 3 | 3CVV|1|C+ 3CVV|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactor | X-ray diffraction | 2.1 | 2009-06-16 | ||||
| 4 | 2WQ6|1|C+ 2WQ6|1|D | 5'-D(*AP*CP*AP*GP*CP*GP*GP*TDYP*CDWP*GP* CP*AP*AP*GP*T)-3', 5'-D(*TP*AP*CP*CP*TP*GP*CP*GP*AP*CP* CP*GP*CP*TP*G)-3' | Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(Dewar)C lesion | X-ray diffraction | 2.3 | 2010-02-23 | ||||
| 5 | 2WB2|1|C+ 2WB2|1|D | 5'-D(*AP*CP*AP*GP*CP*GP*GP*64PP*ZP*GP*CP*AP *GP*GP*T)-3', 5'-D(*TP*AP*CP*CP*TP*GP*CP*GP*AP*CP*CP*GP*CP*TP*G)-3' | synthetic construct | Drosophila Melanogaster (6-4) Photolyase Bound To double stranded Dna containing a T(6-4)C Photolesion | X-ray diffraction | 2.95 | 2009-03-17 | |||
| 6 | 3CVY|1|C+ 3CVY|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase bound to repaired ds DNA | X-ray diffraction | 2.7 | 2008-11-04 | ||||
| 7 | 3CVX|1|C+ 3CVX|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase H369M mutant bound to ds DNA with a T-T (6-4) photolesion | X-ray diffraction | 3.2 | 2009-10-13 | ||||
| 8 | 3CVW|1|C+ 3CVW|1|D | DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3') | Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0 | X-ray diffraction | 3.2 | 2009-10-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 3CVW|1|C+ 3CVW|1|D | Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0 | X-RAY DIFFRACTION | 3.2 | 15 | enzyme,lyase | ||
| 2 | 3CVX|1|C+ 3CVX|1|D | Drosophila melanogaster (6-4) photolyase H369M mutant bound to ds DNA with a T-T (6-4) photolesion | X-RAY DIFFRACTION | 3.2 | 15 | enzyme,lyase | ||
| 3 | 3CVU|1|C+ 3CVU|1|D | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion | X-RAY DIFFRACTION | 2 | 15 | enzyme,lyase | ||
| 4 | 3CVV|1|C+ 3CVV|1|D | Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactor | X-RAY DIFFRACTION | 2.1 | 15 | enzyme,lyase | ||
| 5 | 2WB2|1|C+ 2WB2|1|D | Drosophila Melanogaster (6-4) Photolyase Bound To double stranded Dna containing a T(6-4)C Photolesion | X-RAY DIFFRACTION | 2.95 | 15 | enzyme,lyase | ||
| 6 | 2WQ6|1|C+ 2WQ6|1|D | Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(Dewar)C lesion | X-RAY DIFFRACTION | 2.3 | 15 | enzyme,lyase | ||
| 7 | 2WQ7|1|C+ 2WQ7|1|D | Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(6-4)C lesion | X-RAY DIFFRACTION | 2 | 15 | enzyme,lyase | ||
| 8 | 3CVY|1|C+ 3CVY|1|D | Drosophila melanogaster (6-4) photolyase bound to repaired ds DNA | X-RAY DIFFRACTION | 2.7 | 15 | enzyme,lyase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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