Equivalence class DNA_4.0_09144.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3JYT|1|T+ 3JYT|1|P (rep) | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(*A*TP*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') | synthetic construct | K65R mutant HIV-1 reverse transcriptase cross-linked to DS-DNA and complexed with DATP as the incoming nucleotide substrate | X-ray diffraction | 3.3 | 2009-10-06 | |||
| 2 | 3KK2|1|T+ 3KK2|1|P | 5'-D(*A*TP*GP*GP*TP*GP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', 5'-D(*AP*CP*A*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DOC))-3' | HIV-1 reverse transcriptase-DNA complex with dATP bound in the nucleotide binding site | X-ray diffraction | 2.9 | 2010-03-23 | ||||
| 3 | 3JSM|1|T+ 3JSM|1|P | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(*A*TP*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') | K65R mutant HIV-1 reverse transcriptase cross-linked to DS-DNA and complexed with tenofovir-diphosphate as the incoming nucleotide substrate | X-ray diffraction | 3 | 2009-09-29 | ||||
| 4 | 3KK1|1|T+ 3KK1|1|P | 5'-D(*A*TP*GP*GP*TP*GP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', 5'-D(*AP*CP*A*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DOC))-3' | HIV-1 reverse transcriptase-DNA complex with nuceotide inhibitor GS-9148-diphosphate bound in nucleotide site | X-ray diffraction | 2.7 | 2010-03-23 | ||||
| 5 | 3KK3|1|T+ 3KK3|1|P | 5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*C*(URT))-3', 5'-D(*AP*TP*GP*GP*TP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' | HIV-1 reverse transcriptase-DNA complex with GS-9148 terminated primer | X-ray diffraction | 2.9 | 2010-03-23 | ||||
| 6 | 1N5Y|1|T+ 1N5Y|1|P | 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3', 5'-D(*AP*TP*GP*C*TP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' | HIV-1 Reverse Transcriptase Crosslinked to Post-Translocation AZTMP-Terminated DNA (Complex P) | X-ray diffraction | 3.1 | 2003-01-28 | ||||
| 7 | 3KLH|1|E+ 3KLH|1|F | DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3'), DNA (5'-D(*AP*T*GP*CP*TP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') | Crystal structure of AZT-Resistant HIV-1 Reverse Transcriptase crosslinked to post-translocation AZTMP-Terminated DNA (COMPLEX P) | X-ray diffraction | 2.9 | 2010-09-22 | ||||
| 8 | 1N6Q|1|T+ 1N6Q|1|P | 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3', 5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' | HIV-1 Reverse Transcriptase Crosslinked to pre-translocation AZTMP-terminated DNA (complex N) | X-ray diffraction | 3 | 2003-01-14 | ||||
| 9 | 3KLF|1|C+ 3KLF|1|D | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3'), DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') | Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-ray diffraction | 3.15 | 2010-09-22 | ||||
| 10 | 3KLF|1|G+ 3KLF|1|H | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3'), DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') | Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-ray diffraction | 3.15 | 2010-09-22 | ||||
| 11 | 3KLF|1|K+ 3KLF|1|L | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3'), DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') | Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-ray diffraction | 3.15 | 2010-09-22 | ||||
| 12 | 3KLF|1|O+ 3KLF|1|P | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3'), DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') | Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-ray diffraction | 3.15 | 2010-09-22 | ||||
| 13 | 1T03|1|T+ 1T03|1|P | Synthetic oligonucleotide primer, Synthetic oligonucleotide template | HIV-1 reverse transcriptase crosslinked to tenofovir terminated template-primer (complex P) | X-ray diffraction | 3.1 | 2004-05-11 | ||||
| 14 | 1T05|1|T+ 1T05|1|P | oligonucleotide primer, oligonucleotide template | HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate | X-ray diffraction | 3 | 2004-05-11 | ||||
| 15 | 3KJV|1|T+ 3KJV|1|P | 5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DOC))-3', 5'-D(*AP*TP*GP*GP*TP*GP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' | HIV-1 reverse transcriptase in complex with DNA | X-ray diffraction | 3.1 | 2010-03-23 | ||||
| 16 | 3KLE|1|C+ 3KLE|1|D | DNA (25-MER), DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3') | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-ray diffraction | 3.2 | 2010-09-22 | ||||
| 17 | 3KLE|1|G+ 3KLE|1|H | DNA (25-MER), DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3') | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-ray diffraction | 3.2 | 2010-09-22 | ||||
| 18 | 3KLE|1|K+ 3KLE|1|L | DNA (25-MER), DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3') | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-ray diffraction | 3.2 | 2010-09-22 | ||||
| 19 | 3KLE|1|O+ 3KLE|1|P | DNA (25-MER), DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(2DA))-3') | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-ray diffraction | 3.2 | 2010-09-22 | ||||
| 20 | 3KLG|1|C+ 3KLG|1|D | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3'), DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to pre-translocation AZTMP-Terminated DNA (COMPLEX N) | X-ray diffraction | 3.65 | 2010-09-22 | ||||
| 21 | 3KLG|1|G+ 3KLG|1|H | DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3'), DNA (5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to pre-translocation AZTMP-Terminated DNA (COMPLEX N) | X-ray diffraction | 3.65 | 2010-09-22 | ||||
| 22 | 1R0A|1|T+ 1R0A|1|P | 5'-D(*A*TP*GP*CP*AP*TP*CP*GP*GP*CP*GP*CP*TP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*GP*GP*T)-3', 5'-D(*C*CP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*AP*GP*CP*GP*CP*CP*GP*(2DA))-3' | Crystal structure of HIV-1 reverse transcriptase covalently tethered to DNA template-primer solved to 2.8 angstroms | X-ray diffraction | 2.8 | 2004-08-03 | ||||
| 23 | 1RTD|1|E+ 1RTD|1|F | DNA PRIMER FOR REVERSE TRANSCRIPTASE, DNA TEMPLATE FOR REVERSE TRANSCRIPTASE | STRUCTURE OF A CATALYTIC COMPLEX OF HIV-1 REVERSE TRANSCRIPTASE: IMPLICATIONS FOR NUCLEOSIDE ANALOG DRUG RESISTANCE | X-ray diffraction | 3.2 | 1998-12-09 | ||||
| 24 | 1RTD|1|G+ 1RTD|1|H | DNA PRIMER FOR REVERSE TRANSCRIPTASE, DNA TEMPLATE FOR REVERSE TRANSCRIPTASE | STRUCTURE OF A CATALYTIC COMPLEX OF HIV-1 REVERSE TRANSCRIPTASE: IMPLICATIONS FOR NUCLEOSIDE ANALOG DRUG RESISTANCE | X-ray diffraction | 3.2 | 1998-12-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1R0A|1|T+ 1R0A|1|P | Crystal structure of HIV-1 reverse transcriptase covalently tethered to DNA template-primer solved to 2.8 angstroms | X-RAY DIFFRACTION | 2.8 | 27 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase | |
| 2 | 1N5Y|1|T+ 1N5Y|1|P | HIV-1 Reverse Transcriptase Crosslinked to Post-Translocation AZTMP-Terminated DNA (Complex P) | X-RAY DIFFRACTION | 3.1 | 27 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase | |
| 3 | 3KLH|1|E+ 3KLH|1|F | Crystal structure of AZT-Resistant HIV-1 Reverse Transcriptase crosslinked to post-translocation AZTMP-Terminated DNA (COMPLEX P) | X-RAY DIFFRACTION | 2.9 | 27 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase | |
| 4 | 1T03|1|T+ 1T03|1|P | HIV-1 reverse transcriptase crosslinked to tenofovir terminated template-primer (complex P) | X-RAY DIFFRACTION | 3.1 | 27 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase | |
| 5 | 1N6Q|1|T+ 1N6Q|1|P | HIV-1 Reverse Transcriptase Crosslinked to pre-translocation AZTMP-terminated DNA (complex N) | X-RAY DIFFRACTION | 3 | 27 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase | |
| 6 | 3KLF|1|K+ 3KLF|1|L | Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-RAY DIFFRACTION | 3.15 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 7 | 3KLF|1|O+ 3KLF|1|P | Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-RAY DIFFRACTION | 3.15 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 8 | 3KLF|1|C+ 3KLF|1|D | Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-RAY DIFFRACTION | 3.15 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 9 | 3KLF|1|G+ 3KLF|1|H | Crystal structure of wild-type HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-RAY DIFFRACTION | 3.15 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 10 | 3KLG|1|G+ 3KLG|1|H | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to pre-translocation AZTMP-Terminated DNA (COMPLEX N) | X-RAY DIFFRACTION | 3.65 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 11 | 3KLG|1|C+ 3KLG|1|D | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to pre-translocation AZTMP-Terminated DNA (COMPLEX N) | X-RAY DIFFRACTION | 3.65 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 12 | 1RTD|1|G+ 1RTD|1|H | STRUCTURE OF A CATALYTIC COMPLEX OF HIV-1 REVERSE TRANSCRIPTASE: IMPLICATIONS FOR NUCLEOSIDE ANALOG DRUG RESISTANCE | X-RAY DIFFRACTION | 3.2 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 13 | 1RTD|1|E+ 1RTD|1|F | STRUCTURE OF A CATALYTIC COMPLEX OF HIV-1 REVERSE TRANSCRIPTASE: IMPLICATIONS FOR NUCLEOSIDE ANALOG DRUG RESISTANCE | X-RAY DIFFRACTION | 3.2 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 14 | 3KLE|1|C+ 3KLE|1|D | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-RAY DIFFRACTION | 3.2 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 15 | 3KLE|1|G+ 3KLE|1|H | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-RAY DIFFRACTION | 3.2 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 16 | 3KLE|1|K+ 3KLE|1|L | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-RAY DIFFRACTION | 3.2 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 17 | 3KLE|1|O+ 3KLE|1|P | Crystal structure of AZT-resistant HIV-1 Reverse Transcriptase crosslinked to a DSDNA with a bound excision product, AZTPPPPA | X-RAY DIFFRACTION | 3.2 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 18 | 3JYT|1|T+ 3JYT|1|P | K65R mutant HIV-1 reverse transcriptase cross-linked to DS-DNA and complexed with DATP as the incoming nucleotide substrate | X-RAY DIFFRACTION | 3.3 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 19 | 3JSM|1|T+ 3JSM|1|P | K65R mutant HIV-1 reverse transcriptase cross-linked to DS-DNA and complexed with tenofovir-diphosphate as the incoming nucleotide substrate | X-RAY DIFFRACTION | 3 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 20 | 1T05|1|T+ 1T05|1|P | HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate | X-RAY DIFFRACTION | 3 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 21 | 3KK3|1|T+ 3KK3|1|P | HIV-1 reverse transcriptase-DNA complex with GS-9148 terminated primer | X-RAY DIFFRACTION | 2.9 | 27 | enzyme,polymerase,transferase | ||
| 22 | 3KK2|1|T+ 3KK2|1|P | HIV-1 reverse transcriptase-DNA complex with dATP bound in the nucleotide binding site | X-RAY DIFFRACTION | 2.9 | 27 | double helix,structure | enzyme,polymerase,transferase | |
| 23 | 3KK1|1|T+ 3KK1|1|P | HIV-1 reverse transcriptase-DNA complex with nuceotide inhibitor GS-9148-diphosphate bound in nucleotide site | X-RAY DIFFRACTION | 2.7 | 27 | enzyme,polymerase,transferase | ||
| 24 | 3KJV|1|T+ 3KJV|1|P | HIV-1 reverse transcriptase in complex with DNA | X-RAY DIFFRACTION | 3.1 | 27 | double helix,structure | enzyme,polymerase,transferase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: