RNA 3D Hub //

Equivalence class DNA_4.0_19769.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11ZME|1|A+ 1ZME|1|B (rep)DNA (5'-D(*AP*CP*GP*GP*AP*GP*(5IU)P*TP*GP*GP*CP*TP*(5IU)P*CP*CP*CP*G)-3'), DNA (5'-D(*AP*CP*GP*GP*GP*AP*AP*GP*CP*CP*AP*AP*CP*TP*CP*CP*G)-3')Saccharomyces cerevisiaeCRYSTAL STRUCTURE OF PUT3/DNA COMPLEXX-ray diffraction2.51998-09-16
21JFT|1|B5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T)-3'PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEXX-ray diffraction2.52002-02-08
31QPZ|1|MDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T)-3')PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-ray diffraction2.51999-06-07
41JH9|1|B5'-D(*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*TP*TP*TP*TP*CP*GP*T)-3'PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEXX-ray diffraction2.552002-02-08
51WET|1|BDNA (5'-D(*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*TP*TP*TP*TP*CP*GP*T )-3')STRUCTURE OF THE PURR-GUANINE-PURF OPERATOR COMPLEXX-ray diffraction2.61997-11-21
62PUC|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-ray diffraction2.61998-05-06
72PUD|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-ray diffraction2.61998-05-06
82PUG|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-ray diffraction2.71998-05-06
91VPW|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')synthetic constructSTRUCTURE OF THE PURR MUTANT, L54M, BOUND TO HYPOXANTHINE AND PURF OPERATOR DNAX-ray diffraction2.71998-06-17
102PUE|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-ray diffraction2.71998-05-06
112PUB|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')synthetic constructCRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-ray diffraction2.71998-05-06
121PNR|1|BDNA (5'-D(*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*TP*TP*TP*TP*CP*GP*T )-3')PURINE REPRESSOR-HYPOXANTHINE-PURF-OPERATOR COMPLEXX-ray diffraction2.71995-11-20
131BDH|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-ray diffraction2.71997-04-21
141ZAY|1|MDNA (5'-D(*AP*AP*CP*GP*AP*AP*AP*AP*TP*(1AP)P*TP*TP*TP*TP*CP*GP*T)-3')PURINE REPRESSOR-HYPOXANTHINE-MODIFIED-PURF-OPERATOR COMPLEXX-ray diffraction2.71999-12-16
151QQB|1|M5'-D(*TP*AP*CP*GP*CP*AP*AP*TP*CP*GP*AP*TP*TP*GP*CP*GP*T)-3'PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-ray diffraction2.71999-06-09
162PUA|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')synthetic constructCRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-ray diffraction2.91998-05-06
171JFS|1|B5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T)-3'PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEXX-ray diffraction2.92002-02-08
181QP0|1|MDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*CP*CP*GP*GP*TP*TP*GP*CP*GP*T)-3')PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-ray diffraction2.91999-06-07
191QP7|1|MDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*CP*CP*GP*GP*TP*TP*GP*CP*GP*T)-3')PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-ray diffraction2.91999-06-04
201BDI|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-ray diffraction31997-04-21
212PUF|1|BDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3')CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-ray diffraction31998-05-06
221QQA|1|MDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*GP*CP*GP*CP*TP*TP*GP*CP*GP*T)-3')PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-ray diffraction31999-06-09
231QP4|1|MDNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*TP*CP*GP*AP*TP*TP*GP*CP*GP*T)-3')PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-ray diffraction31999-06-07

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLengthNAKB NA annotationNAKB protein annotation
11PNR|1|BPURINE REPRESSOR-HYPOXANTHINE-PURF-OPERATOR COMPLEXX-RAY DIFFRACTION2.717double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
21WET|1|BSTRUCTURE OF THE PURR-GUANINE-PURF OPERATOR COMPLEXX-RAY DIFFRACTION2.617double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
31ZAY|1|MPURINE REPRESSOR-HYPOXANTHINE-MODIFIED-PURF-OPERATOR COMPLEXX-RAY DIFFRACTION2.717B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
42PUD|1|BCRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-RAY DIFFRACTION2.617B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
52PUB|1|BCRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-RAY DIFFRACTION2.717B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
62PUC|1|BCRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-RAY DIFFRACTION2.617B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
71BDI|1|BPURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-RAY DIFFRACTION317B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
81QPZ|1|MPURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-RAY DIFFRACTION2.517B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
92PUA|1|BCRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-RAY DIFFRACTION2.917B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
102PUG|1|BCRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-RAY DIFFRACTION2.717double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
112PUE|1|BCRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-RAY DIFFRACTION2.717B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
121VPW|1|BSTRUCTURE OF THE PURR MUTANT, L54M, BOUND TO HYPOXANTHINE AND PURF OPERATOR DNAX-RAY DIFFRACTION2.717B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
132PUF|1|BCRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICESX-RAY DIFFRACTION317double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
141BDH|1|BPURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-RAY DIFFRACTION2.717B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
151QQA|1|MPURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-RAY DIFFRACTION317B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
161QP4|1|MPURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-RAY DIFFRACTION317B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
171QQB|1|MPURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-RAY DIFFRACTION2.717B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
181QP7|1|MPURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-RAY DIFFRACTION2.917B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
191QP0|1|MPURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEXX-RAY DIFFRACTION2.917B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
201JFT|1|BPURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEXX-RAY DIFFRACTION2.517double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
211JFS|1|BPURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEXX-RAY DIFFRACTION2.917B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
221JH9|1|BPURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEXX-RAY DIFFRACTION2.5517B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
231ZME|1|A+ 1ZME|1|BCRYSTAL STRUCTURE OF PUT3/DNA COMPLEXX-RAY DIFFRACTION2.517B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0159 s