Equivalence class DNA_4.0_22534.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3JSO|1|C+ 3JSO|1|D (rep) | DNA (5'-D(*TP*AP*TP*AP*CP*TP*GP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*CP*AP*GP*TP*A)-3') | Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex | X-ray diffraction | 2.29 | 2010-08-18 | ||||
| 2 | 3JSP|1|C+ 3JSP|1|D | DNA (5'-D(*TP*AP*TP*AP*CP*TP*GP*TP*AP*TP*GP*CP*GP*CP*AP*TP*AP*CP*AP*GP*TP*A)-3') | Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex | X-ray diffraction | 2.9 | 2010-08-18 | ||||
| 3 | 1BDT|1|E+ 1BDT|1|F | DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*TP*AP*CP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*TP*AP*TP*CP*AP*T)-3') | WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX | X-ray diffraction | 2.5 | 1999-02-16 | ||||
| 4 | 1PAR|1|E+ 1PAR|1|F | DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*T P*AP*CP*TP*AP*T)- 3'), DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*T P*AP*TP*CP*AP*T)- 3') | DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE | X-ray diffraction | 2.6 | 1994-07-31 | ||||
| 5 | 1BDV|1|E+ 1BDV|1|F | DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*TP*AP*CP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*TP*AP*TP*CP*AP*T)-3') | ARC FV10 COCRYSTAL | X-ray diffraction | 2.8 | 1999-01-06 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1PAR|1|E+ 1PAR|1|F | DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE | X-RAY DIFFRACTION | 2.6 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 2 | 1BDT|1|E+ 1BDT|1|F | WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX | X-RAY DIFFRACTION | 2.5 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 3 | 1BDV|1|E+ 1BDV|1|F | ARC FV10 COCRYSTAL | X-RAY DIFFRACTION | 2.8 | 22 | double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 4 | 3JSP|1|C+ 3JSP|1|D | Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex | X-RAY DIFFRACTION | 2.9 | 22 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 5 | 3JSO|1|C+ 3JSO|1|D | Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex | X-RAY DIFFRACTION | 2.29 | 22 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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