Equivalence class DNA_4.0_26038.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2F8W|1|A+ 2F8W|1|B (rep) | 5'-D(*CP*AP*CP*GP*TP*G)-3' | Crystal structure of d(CACGTG)2 | X-ray diffraction | 1.2 | 12 | 2006-01-31 | ||||
| 2 | 1VRO|1|A+ 1VRO|1|B | 5'-D(*CP*(GMS)P*CP*GP*CP*G)-3' | Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure | X-ray diffraction | 1.1 | 12 | 2005-04-19 | ||||
| 3 | 2OBZ|1|A+ 2OBZ|1|B | 5'-D(*CP*GP*CP*GP*(BRU)P*G)-3' | Crystal structure of the The brominated Z-DNA duplex d(CGCG[BrU]G) | X-ray diffraction | 1.1 | 12 | 2007-12-25 | ||||
| 4 | 1WOE|1|A+ 1WOE|1|B | Z-DNA hexamer | X-ray structure of a Z-DNA hexamer d(CGCGCG) | X-ray diffraction | 1.5 | 12 | 2005-07-26 | ||||
| 5 | 2HTO|1|A+ 2HTO|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3') | Ruthenium hexammine ion interactions with Z-DNA | X-ray diffraction | 1.54 | 12 | 2006-08-08 | ||||
| 6 | 3FQB|1|A+ 3FQB|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | Barium interactions with Z-DNA | X-ray diffraction | 1.67 | 12 | 2009-02-10 | ||||
| 7 | 3FQ5|1|A+ 3FQ5|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | synthetic construct | Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 | X-ray diffraction | 2.8 | 12 | 2009-02-10 | |||
| 8 | 3FQ5|1|C+ 3FQ5|1|D | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | synthetic construct | Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 | X-ray diffraction | 2.8 | 12 | 2009-02-10 | |||
| 9 | 3F8O|1|A+ 3F8O|1|B | DNA (5'-D(*DCP*DAP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DCP*DGP*DCP*DGP*DTP*DG)-3') | Structure of d(CACGCG).d(CGCGTG) with low concentration of PdCl2 | X-ray diffraction | 1.72 | 12 | 2008-11-25 | ||||
| 10 | 1XA2|1|A+ 1XA2|1|B | 5'-D(*CP*GP*CP*GP*CP*A)-3', 5'-D(*TP*GP*CP*GP*CP*G)-3' | Cobalt hexammine induced tautomeric shift in Z-DNA: the structure of d(CGCGCA).d(TGCGCG) in two crystal forms | X-ray diffraction | 1.71 | 12 | 2004-11-16 | ||||
| 11 | 3GCY|1|A+ 3GCY|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | Crystal studies of d(CACGCG).d(CGCGTG) grown in presence of calcium chloride | X-ray diffraction | 1.8 | 12 | 2009-04-07 | ||||
| 12 | 3G2A|1|A+ 3G2A|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | Crystal structure of d(CACGCG).d(CGCGTG) grown in presence of 1mM MnCl2 | X-ray diffraction | 2 | 12 | 2009-03-03 | ||||
| 13 | 1LJX|1|A+ 1LJX|1|B | 5'-D(*TP*GP*CP*GP*CP*A)-3' | THE STRUCTURE OF D(TPGPCPGPCPA)2 AT 293K: COMPARISON OF THE EFFECT OF SEQUENCE AND TEMPERATURE | X-ray diffraction | 1.64 | 12 | 2002-05-03 | ||||
| 14 | 3GDA|1|A+ 3GDA|1|B | 5'-D(*CP*AP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*TP*G)-3' | Crystal study of d(CACGCG).d(CGCGTG) grwon in presence of stannous chloride | X-ray diffraction | 1.88 | 12 | 2009-04-07 | ||||
| 15 | 1XAM|1|A+ 1XAM|1|B | CGCGCA, TGCGCG | Cobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms. | X-ray diffraction | 1.86 | 12 | 2004-11-16 | ||||
| 16 | 3E9W|1|A+ 3E9W|1|B | 5'-D(*CP*AP*CP*AP*CP*G)-3', 5'-D(*CP*GP*TP*GP*TP*G)-3' | X-Ray Crystal Structure of the hexamer DCACACG:Crystal grown in the presence of cobalt(III)hexammine Chloride. | X-ray diffraction | 2.05 | 12 | 2008-09-30 | ||||
| 17 | 3G2R|1|A | 5'-D(*CP*GP*TP*GP*CP*G)-3' | Crystal structure of d(CACGCG).d(CGCGTG) cocrystallized with MnCl2 | X-ray diffraction | 2.15 | 6 | 2009-03-03 | ||||
| 18 | 2HTT|1|A+ 2HTT|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3') | Ruthenium Hexammine ion interactions with Z-DNA | X-ray diffraction | 2.6 | 12 | 2006-08-08 | ||||
| 19 | 145D|1|A+ 145D|1|B+ 145D|1|C+ 145D|1|D | DNA (5'-D(*(5CM)P*DGP*DGP*DGP*(5CM)P*DG)-3'), DNA (5'-D(*(MCY)P*GP*CP*CP*(5CM)P*G)-3'), DNA (5'-D(*(MCY)P*GP*GP*GP*(5CM)P*G)-3') | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-ray diffraction | 1.25 | 24 | 1994-01-15 | ||||
| 20 | 1ICK|1|A+ 1ICK|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | LEFT-HANDED Z-DNA HEXAMER DUPLEX D(CGCGCG)2 | X-ray diffraction | 0.95 | 12 | 2001-04-12 | ||||
| 21 | 1DN5|1|A+ 1DN5|1|B | DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3') | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-ray diffraction | 1.4 | 12 | 1987-04-16 | ||||
| 22 | 1D41|1|A+ 1D41|1|B | DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3') | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-ray diffraction | 1.3 | 12 | 1992-04-15 | ||||
| 23 | 1D39|1|A+ 1D39|1|B | DNA (5'-D(*CP*(CU)GP*CP*(CU)GP*CP*(CU)G)-3') | COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2 | X-ray diffraction | 1.2 | 12 | 1992-04-15 | ||||
| 24 | 242D|1|A+ 242D|1|B | DNA (5'-D(*CP*GP*CP*GP*(CBR)P*G)-3') | MAD PHASING STRATEGIES EXPLORED WITH A BROMINATED OLIGONUCLEOTIDE CRYSTAL AT 1.65 A RESOLUTION. | X-ray diffraction | 1.65 | 12 | 1996-09-19 | ||||
| 25 | 2ELG|1|A+ 2ELG|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3') | The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius | X-ray diffraction | 1 | 12 | 2008-04-01 | ||||
| 26 | 223D|1|A+ 223D|1|B | DNA (5'-D(*CP*GP*CP*GP*(C46)P*G)-3') | DIRECT OBSERVATION OF TWO BASE-PAIRING MODES OF A CYTOSINE-THYMINE ANALOGUE WITH GUANINE IN A DNA Z-FORM DUPLEX: SIGNIFICANCE FOR BASE ANALOGUE MUTAGENESIS | X-ray diffraction | 1.7 | 12 | 1995-12-09 | ||||
| 27 | 133D|1|A+ 133D|1|B | DNA (5'-D(*CP*GP*CP*GP*(C34)P*G)-3') | THE CRYSTAL STRUCTURE OF N4-METHYLCYTOSINE.GUANOSIN BASE-PAIRS IN THE SYNTHETIC HEXANUCLEOTIDE D(CGCGM(4)CG) | X-ray diffraction | 1.8 | 12 | 1994-01-15 | ||||
| 28 | 390D|1|A+ 390D|1|B | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2 | 12 | 1998-05-05 | ||||
| 29 | 400D|1|A+ 400D|1|B | DNA (5'-D(*(5CM)P*GP*GP*CP*(5CM)P*G)-3') | synthetic construct | THE INTRINSIC STRUCTURE AND STABILITY OF OUT-OF-ALTERNATION BASE PAIRS IN Z-DNA | X-ray diffraction | 1.65 | 12 | 1998-07-09 | |||
| 30 | 1D24|1|A+ 1D24|1|B | DNA (5'-D(*CP*GP*CP*(6OG)P*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA DUPLEX CONTAINING THE CARCINOGENIC LESION O6-METHYLGUANINE | X-ray diffraction | 1.9 | 12 | 1992-04-07 | ||||
| 31 | 390D|1|C | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2 | 6 | 1998-05-05 | ||||
| 32 | 391D|1|C+ 391D|1|D | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2.75 | 12 | 1998-05-05 | ||||
| 33 | 392D|1|A+ 392D|1|B | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 3 | 12 | 1998-05-05 | ||||
| 34 | 392D|1|C+ 392D|1|D | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 3 | 12 | 1998-05-05 | ||||
| 35 | 391D|1|E+ 391D|1|F | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2.75 | 12 | 1998-05-05 | ||||
| 36 | 391D|1|A+ 391D|1|B | DNA (5'-D(P*CP*GP*CP*GP*CP*G)-3') | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-ray diffraction | 2.75 | 12 | 1998-05-05 | ||||
| 37 | 1I0T|1|A+ 1I0T|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | 0.6 A STRUCTURE OF Z-DNA CGCGCG | X-ray diffraction | 0.6 | 12 | 2001-04-04 | ||||
| 38 | 2DCG|1|A+ 2DCG|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | MOLECULAR STRUCTURE OF A LEFT-HANDED DOUBLE HELICAL DNA FRAGMENT AT ATOMIC RESOLUTION | X-ray diffraction | 0.9 | 12 | 1989-01-09 | ||||
| 39 | 336D|1|A+ 336D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX | X-ray diffraction | 1 | 12 | 1998-04-10 | ||||
| 40 | 292D|1|A+ 292D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX | X-ray diffraction | 1 | 12 | 1996-12-02 | ||||
| 41 | 131D|1|A+ 131D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE | X-ray diffraction | 1 | 12 | 1993-10-15 | ||||
| 42 | 1DCG|1|A+ 1DCG|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | THE MOLECULAR STRUCTURE OF THE LEFT-HANDED Z-DNA DOUBLE HELIX AT 1.0 ANGSTROM ATOMIC RESOLUTION. GEOMETRY, CONFORMATION, AND IONIC INTERACTIONS OF D(CGCGCG) | X-ray diffraction | 1 | 12 | 1989-01-09 | ||||
| 43 | 1D48|1|A+ 1D48|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA (MAGNESIUM FREE) AT 1 ANGSTROM RESOLUTION | X-ray diffraction | 1 | 12 | 1992-04-15 | ||||
| 44 | 293D|1|A+ 293D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX | X-ray diffraction | 1 | 12 | 1996-12-02 | ||||
| 45 | 362D|1|A+ 362D|1|B | DNA (5'-D(*TP*GP*CP*GP*CP*A)-3') | THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS | X-ray diffraction | 1.3 | 12 | 1997-11-20 | ||||
| 46 | 1D76|1|A+ 1D76|1|B | DNA (5'-D(*CP*GP*UP*(1AP)P*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT CONTAINING A 2-AMINO ADENINE MODIFICATION: THE RELATIONSHIP BETWEEN CONFORMATION, PACKING, AND HYDRATION IN Z-DNA HEXAMERS | X-ray diffraction | 1.3 | 12 | 1992-09-15 | ||||
| 47 | 1OMK|1|A+ 1OMK|1|B | 5'-D(*CP*AP*CP*GP*(5IU)P*G)-3' | The Crystal Structure of d(CACG(5IU)G) | X-ray diffraction | 1.3 | 12 | 2003-11-04 | ||||
| 48 | 1DNF|1|A+ 1DNF|1|B | DNA (5'-D(*CP*GP*CP*GP*(UFP)P*G)-3') | EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG) | X-ray diffraction | 1.5 | 12 | 1990-10-15 | ||||
| 49 | 417D|1|A+ 417D|1|B | DNA (5'-D(*CP*AP*CP*GP*(C46)P*G)-3') | A THYMINE-LIKE BASE ANALOGUE FORMS WOBBLE PAIRS WITH ADENINE | X-ray diffraction | 1.5 | 12 | 1998-09-30 | ||||
| 50 | 1D40|1|A+ 1D40|1|B | DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3') | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-ray diffraction | 1.3 | 12 | 1992-04-15 | ||||
| 51 | 2IE1|1|A+ 2IE1|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3') | Homo sapiens | Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography | X-ray diffraction | 1.6 | 12 | 2007-10-09 | |||
| 52 | 1DN4|1|A+ 1DN4|1|B | DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3') | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-ray diffraction | 1.6 | 12 | 1987-04-16 | ||||
| 53 | 1V9G|1|A+ 1V9G|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | synthetic construct | Neutron Crystallographic analysis of the Z-DNA hexamer CGCGCG | Neutron diffraction | 1.8 | 12 | 2005-01-26 | |||
| 54 | 181D|1|A+ 181D|1|B | DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') | SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) | X-ray diffraction | 1.6 | 12 | 1995-07-19 | ||||
| 55 | 351D|1|A+ 351D|1|B | DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') | X-RAY CRYSTAL STRUCTURES OF THE HEXAMER DCACGCG: CRYSTALS GROWN IN THE PRESENCE OF RUTHENIUM (II) HEXAMMINE CHLORIDE | X-ray diffraction | 1.64 | 12 | 1997-09-30 | ||||
| 56 | 1DA2|1|A+ 1DA2|1|B | DNA (5'-D(*CP*GP*CP*GP*(C45)P*G)-3') | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO4CG): N4-METHOXYCYTOSINE/GUANINE BASE-PAIRS IN Z-DNA | X-ray diffraction | 1.7 | 12 | 1993-07-15 | ||||
| 57 | 239D|1|A+ 239D|1|B | DNA (5'-D(*CP*CP*CP*GP*GP*G)-3') | POLYMORPHISM IN LEFT HANDED DNA: THE CRYSTAL STRUCTURE OF D(CCCGGG)2 | X-ray diffraction | 2.05 | 12 | 1996-11-08 | ||||
| 58 | 1DJ6|1|A+ 1DJ6|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE | X-ray diffraction | 1 | 12 | 1999-12-18 | ||||
| 59 | 1DA1|1|A+ 1DA1|1|B | DNA (5'-D(*(BRU)P*GP*CP*GP*CP*G)-3') | STRUCTURAL CHARACTERISATION OF THE BROMOURACIL-GUANINE BASE PAIR MISMATCH IN A Z-DNA FRAGMENT | X-ray diffraction | 2.25 | 12 | 1993-07-15 | ||||
| 60 | 210D|1|A | DNA (5'-D(*CP*GP*TP*(1AP)P*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A)CG] AND ITS PLATINATED DERIVATIVE | X-ray diffraction | 1.35 | 6 | 1996-03-22 | ||||
| 61 | 211D|1|A | DNA (5'-D(*CP*GP*TP*(1AP)P*CP*(PT(NH3)3)G)-3') | THE CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A) CG] AND ITS PLATINATED DERIVATIVE | X-ray diffraction | 1.6 | 6 | 1996-03-22 | ||||
| 62 | 180D|1|A+ 180D|1|B | DNA (5'-D(*CP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*GP*CP*G)-3') | SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) | X-ray diffraction | 2.5 | 12 | 1995-07-19 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2011-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1DA1|1|A+ 1DA1|1|B | STRUCTURAL CHARACTERISATION OF THE BROMOURACIL-GUANINE BASE PAIR MISMATCH IN A Z-DNA FRAGMENT | X-RAY DIFFRACTION | 2.25 | 12 | Z-form double helix,double helix,structure | ||
| 2 | 390D|1|A+ 390D|1|B | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2 | 12 | Z-form double helix,double helix,structure | ||
| 3 | 211D|1|A | THE CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A) CG] AND ITS PLATINATED DERIVATIVE | X-RAY DIFFRACTION | 1.6 | 6 | Z-form double helix,double helix,structure | ||
| 4 | 210D|1|A | CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A)CG] AND ITS PLATINATED DERIVATIVE | X-RAY DIFFRACTION | 1.35 | 6 | Z-form double helix,double helix,structure | ||
| 5 | 390D|1|C | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2 | 6 | Z-form double helix,double helix,structure | ||
| 6 | 391D|1|E+ 391D|1|F | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2.75 | 12 | Z-form double helix,double helix,structure | ||
| 7 | 391D|1|A+ 391D|1|B | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2.75 | 12 | Z-form double helix,double helix,structure | ||
| 8 | 391D|1|C+ 391D|1|D | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 2.75 | 12 | Z-form double helix,double helix,structure | ||
| 9 | 1D40|1|A+ 1D40|1|B | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-RAY DIFFRACTION | 1.3 | 12 | Z-form double helix,double helix,structure | ||
| 10 | 145D|1|A+ 145D|1|B+ 145D|1|C+ 145D|1|D | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-RAY DIFFRACTION | 1.25 | 24 | Z-form double helix,double helix,structure | ||
| 11 | 3F8O|1|A+ 3F8O|1|B | Structure of d(CACGCG).d(CGCGTG) with low concentration of PdCl2 | X-RAY DIFFRACTION | 1.72 | 12 | Z-form double helix,double helix,structure | ||
| 12 | 3GCY|1|A+ 3GCY|1|B | Crystal studies of d(CACGCG).d(CGCGTG) grown in presence of calcium chloride | X-RAY DIFFRACTION | 1.8 | 12 | Z-form double helix,double helix,structure | ||
| 13 | 3FQB|1|A+ 3FQB|1|B | Barium interactions with Z-DNA | X-RAY DIFFRACTION | 1.67 | 12 | Z-form double helix,double helix,structure | ||
| 14 | 1VRO|1|A+ 1VRO|1|B | Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure | X-RAY DIFFRACTION | 1.1 | 12 | Z-form double helix,double helix,structure | ||
| 15 | 3GDA|1|A+ 3GDA|1|B | Crystal study of d(CACGCG).d(CGCGTG) grwon in presence of stannous chloride | X-RAY DIFFRACTION | 1.88 | 12 | Z-form double helix,double helix,structure | ||
| 16 | 362D|1|A+ 362D|1|B | THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS | X-RAY DIFFRACTION | 1.3 | 12 | Z-form double helix,double helix,structure | ||
| 17 | 1LJX|1|A+ 1LJX|1|B | THE STRUCTURE OF D(TPGPCPGPCPA)2 AT 293K: COMPARISON OF THE EFFECT OF SEQUENCE AND TEMPERATURE | X-RAY DIFFRACTION | 1.64 | 12 | Z-form double helix,double helix,structure | ||
| 18 | 2IE1|1|A+ 2IE1|1|B | Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography | X-RAY DIFFRACTION | 1.6 | 12 | Z-form double helix,double helix,structure | ||
| 19 | 1D24|1|A+ 1D24|1|B | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA DUPLEX CONTAINING THE CARCINOGENIC LESION O6-METHYLGUANINE | X-RAY DIFFRACTION | 1.9 | 12 | Z-form double helix,double helix,structure | ||
| 20 | 2HTT|1|A+ 2HTT|1|B | Ruthenium Hexammine ion interactions with Z-DNA | X-RAY DIFFRACTION | 2.6 | 12 | Z-form double helix,double helix,structure | ||
| 21 | 392D|1|C+ 392D|1|D | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 3 | 12 | Z-form double helix,double helix,structure | ||
| 22 | 1XA2|1|A+ 1XA2|1|B | Cobalt hexammine induced tautomeric shift in Z-DNA: the structure of d(CGCGCA).d(TGCGCG) in two crystal forms | X-RAY DIFFRACTION | 1.71 | 12 | Z-form double helix,double helix,structure | ||
| 23 | 2HTO|1|A+ 2HTO|1|B | Ruthenium hexammine ion interactions with Z-DNA | X-RAY DIFFRACTION | 1.54 | 12 | Z-form double helix,double helix,structure | ||
| 24 | 1XAM|1|A+ 1XAM|1|B | Cobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms. | X-RAY DIFFRACTION | 1.86 | 12 | Z-form double helix,double helix,structure | ||
| 25 | 392D|1|A+ 392D|1|B | STRUCTURAL VARIABILITY AND NEW INTERMOLECULAR INTERACTIONS OF Z-DNA IN CRYSTALS OF D(PCPGPCPGPCPG) | X-RAY DIFFRACTION | 3 | 12 | Z-form double helix,double helix,structure | ||
| 26 | 1DJ6|1|A+ 1DJ6|1|B | COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 27 | 1D76|1|A+ 1D76|1|B | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT CONTAINING A 2-AMINO ADENINE MODIFICATION: THE RELATIONSHIP BETWEEN CONFORMATION, PACKING, AND HYDRATION IN Z-DNA HEXAMERS | X-RAY DIFFRACTION | 1.3 | 12 | Z-form double helix,double helix,structure | ||
| 28 | 1ICK|1|A+ 1ICK|1|B | LEFT-HANDED Z-DNA HEXAMER DUPLEX D(CGCGCG)2 | X-RAY DIFFRACTION | 0.95 | 12 | Z-form double helix,double helix,structure | ||
| 29 | 2DCG|1|A+ 2DCG|1|B | MOLECULAR STRUCTURE OF A LEFT-HANDED DOUBLE HELICAL DNA FRAGMENT AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 0.9 | 12 | Z-form double helix,double helix,structure | ||
| 30 | 336D|1|A+ 336D|1|B | INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 31 | 293D|1|A+ 293D|1|B | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 32 | 292D|1|A+ 292D|1|B | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 33 | 1DCG|1|A+ 1DCG|1|B | THE MOLECULAR STRUCTURE OF THE LEFT-HANDED Z-DNA DOUBLE HELIX AT 1.0 ANGSTROM ATOMIC RESOLUTION. GEOMETRY, CONFORMATION, AND IONIC INTERACTIONS OF D(CGCGCG) | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 34 | 2ELG|1|A+ 2ELG|1|B | The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 35 | 1D39|1|A+ 1D39|1|B | COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2 | X-RAY DIFFRACTION | 1.2 | 12 | Z-form double helix,double helix,structure | ||
| 36 | 133D|1|A+ 133D|1|B | THE CRYSTAL STRUCTURE OF N4-METHYLCYTOSINE.GUANOSIN BASE-PAIRS IN THE SYNTHETIC HEXANUCLEOTIDE D(CGCGM(4)CG) | X-RAY DIFFRACTION | 1.8 | 12 | Z-form double helix,double helix,structure | ||
| 37 | 242D|1|A+ 242D|1|B | MAD PHASING STRATEGIES EXPLORED WITH A BROMINATED OLIGONUCLEOTIDE CRYSTAL AT 1.65 A RESOLUTION. | X-RAY DIFFRACTION | 1.65 | 12 | Z-form double helix,double helix,structure | ||
| 38 | 181D|1|A+ 181D|1|B | SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) | X-RAY DIFFRACTION | 1.6 | 12 | Z-form double helix,double helix,structure | ||
| 39 | 351D|1|A+ 351D|1|B | X-RAY CRYSTAL STRUCTURES OF THE HEXAMER DCACGCG: CRYSTALS GROWN IN THE PRESENCE OF RUTHENIUM (II) HEXAMMINE CHLORIDE | X-RAY DIFFRACTION | 1.64 | 12 | Z-form double helix,double helix,structure | ||
| 40 | 3G2A|1|A+ 3G2A|1|B | Crystal structure of d(CACGCG).d(CGCGTG) grown in presence of 1mM MnCl2 | X-RAY DIFFRACTION | 2 | 12 | Z-form double helix,double helix,structure | ||
| 41 | 400D|1|A+ 400D|1|B | THE INTRINSIC STRUCTURE AND STABILITY OF OUT-OF-ALTERNATION BASE PAIRS IN Z-DNA | X-RAY DIFFRACTION | 1.65 | 12 | Z-form double helix,double helix,structure | ||
| 42 | 1DN4|1|A+ 1DN4|1|B | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-RAY DIFFRACTION | 1.6 | 12 | Z-form double helix,double helix,structure | ||
| 43 | 1DN5|1|A+ 1DN5|1|B | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-RAY DIFFRACTION | 1.4 | 12 | Z-form double helix,double helix,structure | ||
| 44 | 1D41|1|A+ 1D41|1|B | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-RAY DIFFRACTION | 1.3 | 12 | Z-form double helix,double helix,structure | ||
| 45 | 1D48|1|A+ 1D48|1|B | STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA (MAGNESIUM FREE) AT 1 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 46 | 1WOE|1|A+ 1WOE|1|B | X-ray structure of a Z-DNA hexamer d(CGCGCG) | X-RAY DIFFRACTION | 1.5 | 12 | Z-form double helix,double helix,structure | ||
| 47 | 2F8W|1|A+ 2F8W|1|B | Crystal structure of d(CACGTG)2 | X-RAY DIFFRACTION | 1.2 | 12 | Z-form double helix,double helix,structure | ||
| 48 | 1I0T|1|A+ 1I0T|1|B | 0.6 A STRUCTURE OF Z-DNA CGCGCG | X-RAY DIFFRACTION | 0.6 | 12 | Z-form double helix,double helix,structure | ||
| 49 | 131D|1|A+ 131D|1|B | THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 50 | 1V9G|1|A+ 1V9G|1|B | Neutron Crystallographic analysis of the Z-DNA hexamer CGCGCG | NEUTRON DIFFRACTION | 1.8 | 12 | Z-form double helix,double helix,structure | ||
| 51 | 223D|1|A+ 223D|1|B | DIRECT OBSERVATION OF TWO BASE-PAIRING MODES OF A CYTOSINE-THYMINE ANALOGUE WITH GUANINE IN A DNA Z-FORM DUPLEX: SIGNIFICANCE FOR BASE ANALOGUE MUTAGENESIS | X-RAY DIFFRACTION | 1.7 | 12 | Z-form double helix,double helix,structure | ||
| 52 | 417D|1|A+ 417D|1|B | A THYMINE-LIKE BASE ANALOGUE FORMS WOBBLE PAIRS WITH ADENINE | X-RAY DIFFRACTION | 1.5 | 12 | Z-form double helix,double helix,structure | ||
| 53 | 1DNF|1|A+ 1DNF|1|B | EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG) | X-RAY DIFFRACTION | 1.5 | 12 | Z-form double helix,double helix,structure | ||
| 54 | 2OBZ|1|A+ 2OBZ|1|B | Crystal structure of the The brominated Z-DNA duplex d(CGCG[BrU]G) | X-RAY DIFFRACTION | 1.1 | 12 | Z-form double helix,double helix,structure | ||
| 55 | 1DA2|1|A+ 1DA2|1|B | MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO4CG): N4-METHOXYCYTOSINE/GUANINE BASE-PAIRS IN Z-DNA | X-RAY DIFFRACTION | 1.7 | 12 | Z-form double helix,double helix,structure | ||
| 56 | 3FQ5|1|C+ 3FQ5|1|D | Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 | X-RAY DIFFRACTION | 2.8 | 12 | Z-form double helix,double helix,structure | ||
| 57 | 3FQ5|1|A+ 3FQ5|1|B | Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 | X-RAY DIFFRACTION | 2.8 | 12 | Z-form double helix,double helix,structure | ||
| 58 | 3G2R|1|A | Crystal structure of d(CACGCG).d(CGCGTG) cocrystallized with MnCl2 | X-RAY DIFFRACTION | 2.15 | 6 | Z-form double helix,double helix,structure | ||
| 59 | 3E9W|1|A+ 3E9W|1|B | X-Ray Crystal Structure of the hexamer DCACACG:Crystal grown in the presence of cobalt(III)hexammine Chloride. | X-RAY DIFFRACTION | 2.05 | 12 | Z-form double helix,double helix,structure | ||
| 60 | 1OMK|1|A+ 1OMK|1|B | The Crystal Structure of d(CACG(5IU)G) | X-RAY DIFFRACTION | 1.3 | 12 | Z-form double helix,double helix,structure | ||
| 61 | 180D|1|A+ 180D|1|B | SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) | X-RAY DIFFRACTION | 2.5 | 12 | Z-form double helix,double helix,structure | ||
| 62 | 239D|1|A+ 239D|1|B | POLYMORPHISM IN LEFT HANDED DNA: THE CRYSTAL STRUCTURE OF D(CCCGGG)2 | X-RAY DIFFRACTION | 2.05 | 12 | Z-form double helix,double helix,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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