Equivalence class DNA_4.0_29827.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1JB7|1|D (rep) | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex | X-ray diffraction | 1.86 | 2001-06-11 | ||||
| 2 | 1PH4|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*CP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCG | X-ray diffraction | 2.3 | 2003-06-17 | ||||
| 3 | 1PH8|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*CP*GP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGG | X-ray diffraction | 2.36 | 2003-06-17 | ||||
| 4 | 1PH3|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*TP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG | X-ray diffraction | 2.3 | 2003-06-17 | ||||
| 5 | 1PH9|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*AP*GP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGG | X-ray diffraction | 2.5 | 2003-06-17 | ||||
| 6 | 1PHJ|1|D | 5'-D(*GP*GP*(3DR)P*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGG | X-ray diffraction | 2.5 | 2003-06-17 | ||||
| 7 | 1PA6|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*AP*GP*G)-3' | Crystal structure of the OXYTRICHA nova telomere end-binding protein complexed with noncognate ssDNA GGGGTTTTGAGG | X-ray diffraction | 2.45 | 2003-06-10 | ||||
| 8 | 1OTC|1|D | DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3') | THE O. NOVA TELOMERE END BINDING PROTEIN COMPLEXED WITH SINGLE STRAND DNA | X-ray diffraction | 2.8 | 1999-04-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1PA6|1|D | Crystal structure of the OXYTRICHA nova telomere end-binding protein complexed with noncognate ssDNA GGGGTTTTGAGG | X-RAY DIFFRACTION | 2.45 | 12 | function,quadruplex,structure,telomeric DNA | chromatin,structural,telomere | |
| 2 | 1PH3|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGTG | X-RAY DIFFRACTION | 2.3 | 12 | quadruplex,structure | chromatin,structural,telomere | |
| 3 | 1PH4|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCG | X-RAY DIFFRACTION | 2.3 | 12 | quadruplex,structure | chromatin,structural,telomere | |
| 4 | 1JB7|1|D | DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex | X-RAY DIFFRACTION | 1.86 | 12 | function,quadruplex,structure,telomeric DNA | chromatin,structural,telomere | |
| 5 | 1OTC|1|D | THE O. NOVA TELOMERE END BINDING PROTEIN COMPLEXED WITH SINGLE STRAND DNA | X-RAY DIFFRACTION | 2.8 | 12 | function,quadruplex,structure,telomeric DNA | chromatin,structural,telomere | |
| 6 | 1PH9|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGAGG | X-RAY DIFFRACTION | 2.5 | 12 | quadruplex,structure | chromatin,structural,telomere | |
| 7 | 1PH8|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGCGG | X-RAY DIFFRACTION | 2.36 | 12 | quadruplex,structure | chromatin,structural,telomere | |
| 8 | 1PHJ|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GG(3DR)GTTTTGGGG | X-RAY DIFFRACTION | 2.5 | 12 | quadruplex,structure | chromatin,structural,telomere |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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