Equivalence class DNA_4.0_36303.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3D71|1|M (rep) | BMR promoter DNA | synthetic construct | Crystal structure of E253Q BMRR bound to 22 base pair promoter site | X-ray diffraction | 2.8 | 2008-08-26 | |||
| 2 | 3D6Z|1|B | BMR promoter DNA | synthetic construct | Crystal structure of R275E mutant of BMRR bound to DNA and rhodamine | X-ray diffraction | 2.6 | 2008-08-26 | |||
| 3 | 3D6Y|1|B | BMR promoter DNA | synthetic construct | Crystal structure of R275E mutant of BMRR bound to DNA and berberine | X-ray diffraction | 2.7 | 2008-08-26 | |||
| 4 | 3D70|1|B | Multidrug-efflux transporter 1 regulator | Bacillus subtilis | Crystal structure of E253A mutant of BMRR bound to 22-bp oligonucleotide | X-ray diffraction | 2.8 | 2008-08-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 3D71|1|M | Crystal structure of E253Q BMRR bound to 22 base pair promoter site | X-RAY DIFFRACTION | 2.8 | 24 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 2 | 3D70|1|B | Crystal structure of E253A mutant of BMRR bound to 22-bp oligonucleotide | X-RAY DIFFRACTION | 2.8 | 24 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 3 | 3D6Y|1|B | Crystal structure of R275E mutant of BMRR bound to DNA and berberine | X-RAY DIFFRACTION | 2.7 | 24 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 4 | 3D6Z|1|B | Crystal structure of R275E mutant of BMRR bound to DNA and rhodamine | X-RAY DIFFRACTION | 2.6 | 24 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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