Equivalence class DNA_4.0_39895.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3I3M|1|B (rep) | DNA (5'-D(P*TP*(ME6)P*T)-3') | Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC-T | X-ray diffraction | 1.5 | 2009-08-25 | ||||
| 2 | 3I49|1|B | DNA (5'-D(P*TP*(ME6)P*T)-3') | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meC-T | X-ray diffraction | 1.6 | 2009-08-25 | ||||
| 3 | 3I2O|1|B | DNA (5'-D(P*TP*(MA7)P*T)-3') | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA-T | X-ray diffraction | 1.7 | 2009-08-25 | ||||
| 4 | 2FDI|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 3 hours) | X-ray diffraction | 1.8 | 2006-02-21 | ||||
| 5 | 2FDH|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-ray diffraction | 2.1 | 2006-02-21 | ||||
| 6 | 2FDG|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Fe(II), succinate, and methylated trinucleotide T-meA-T | X-ray diffraction | 2.2 | 2006-02-21 | ||||
| 7 | 2FD8|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-ray diffraction | 2.3 | 2006-02-21 | ||||
| 8 | 2FDF|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Co(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-ray diffraction | 2.1 | 2006-02-21 | ||||
| 9 | 2FDK|1|B | 5'-D(P*TP*(MA7)P*T)-3' | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 9 days) | X-ray diffraction | 2.3 | 2006-02-21 | ||||
| 10 | 2F55|1|E | 5'-D(P*(DU)P*(DU)P*(DU))-3' | Two hepatitis c virus ns3 helicase domains complexed with the same strand of dna | X-ray diffraction | 3.3 | 2005-12-06 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 2F55|1|E | Two hepatitis c virus ns3 helicase domains complexed with the same strand of dna | X-RAY DIFFRACTION | 3.3 | 3 | enzyme,helicase,hydrolase | ||
| 2 | 2FDF|1|B | Crystal Structure of AlkB in complex with Co(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 2.1 | 3 | enzyme,oxidoreductase | ||
| 3 | 2FDK|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 9 days) | X-RAY DIFFRACTION | 2.3 | 3 | enzyme,oxidoreductase | ||
| 4 | 2FD8|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 2.3 | 3 | enzyme,oxidoreductase | ||
| 5 | 2FDH|1|B | Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 2.1 | 3 | enzyme,oxidoreductase | ||
| 6 | 2FDI|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 3 hours) | X-RAY DIFFRACTION | 1.8 | 3 | enzyme,oxidoreductase | ||
| 7 | 2FDG|1|B | Crystal Structure of AlkB in complex with Fe(II), succinate, and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 2.2 | 3 | enzyme,oxidoreductase | ||
| 8 | 3I2O|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA-T | X-RAY DIFFRACTION | 1.7 | 3 | enzyme,oxidoreductase | ||
| 9 | 3I49|1|B | Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meC-T | X-RAY DIFFRACTION | 1.6 | 3 | enzyme,oxidoreductase | ||
| 10 | 3I3M|1|B | Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC-T | X-RAY DIFFRACTION | 1.5 | 3 | enzyme,oxidoreductase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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