#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11S10|1|C+ 1S10|1|B (rep)5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-ray diffraction2.12004-03-30
22AGQ|1|C+ 2AGQ|1|B5'-D(*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*(DOC))-3', 5'-D(*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysisX-ray diffraction2.12005-09-06
31S0O|1|D+ 1S0O|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3', 5'-D(*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-ray diffraction2.12004-03-30
41S0O|1|F+ 1S0O|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3', 5'-D(*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-ray diffraction2.12004-03-30
52IA6|1|D+ 2IA6|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*A)-3', 5'-D(*TP*CP*AP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural GapX-ray diffraction2.52007-09-11
62IA6|1|F+ 2IA6|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*A)-3', 5'-D(*TP*CP*AP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural GapX-ray diffraction2.52007-09-11
71N56|1|D+ 1N56|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*AP*A)-3', 5'-D(*TP*CP*AP*TP*(3DR)P*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'synthetic constructY-family DNA polymerase Dpo4 in complex with DNA containing abasic lesionX-ray diffraction2.42004-02-24
81N56|1|F+ 1N56|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*AP*A)-3', 5'-D(*TP*CP*AP*TP*(3DR)P*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'synthetic constructY-family DNA polymerase Dpo4 in complex with DNA containing abasic lesionX-ray diffraction2.42004-02-24
92AGO|1|C+ 2AGO|1|BDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*G)-3'), DNA (5'-D(*TP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysisX-ray diffraction2.852005-09-06
102AGP|1|D+ 2AGP|1|CDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*(DOC)-3'), DNA (5'-D(*TP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysisX-ray diffraction2.92005-09-06
112AGP|1|F+ 2AGP|1|EDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*(DOC)-3'), DNA (5'-D(*TP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysisX-ray diffraction2.92005-09-06

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLengthNAKB NA annotationNAKB protein annotation
11S0O|1|D+ 1S0O|1|CSnapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-RAY DIFFRACTION2.117B-form double helix,double helix,structureenzyme,polymerase,transferase
22IA6|1|D+ 2IA6|1|CBypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural GapX-RAY DIFFRACTION2.517B-form double helix,double helix,structureenzyme,polymerase,transferase
31N56|1|D+ 1N56|1|CY-family DNA polymerase Dpo4 in complex with DNA containing abasic lesionX-RAY DIFFRACTION2.417enzyme,polymerase,transferase
42AGO|1|C+ 2AGO|1|BFidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysisX-RAY DIFFRACTION2.8517B-form double helix,double helix,structureenzyme,polymerase,transferase
52AGP|1|F+ 2AGP|1|EFidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysisX-RAY DIFFRACTION2.917B-form double helix,double helix,structureenzyme,polymerase,transferase
62AGP|1|D+ 2AGP|1|CFidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysisX-RAY DIFFRACTION2.917B-form double helix,double helix,structureenzyme,polymerase,transferase
71S10|1|C+ 1S10|1|BSnapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-RAY DIFFRACTION2.117B-form double helix,double helix,structureenzyme,polymerase,transferase
82AGQ|1|C+ 2AGQ|1|BFidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysisX-RAY DIFFRACTION2.117B-form double helix,double helix,structureenzyme,polymerase,transferase
91N56|1|F+ 1N56|1|EY-family DNA polymerase Dpo4 in complex with DNA containing abasic lesionX-RAY DIFFRACTION2.417enzyme,polymerase,transferase
102IA6|1|F+ 2IA6|1|EBypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural GapX-RAY DIFFRACTION2.517B-form double helix,double helix,structureenzyme,polymerase,transferase
111S0O|1|F+ 1S0O|1|ESnapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-RAY DIFFRACTION2.117B-form double helix,double helix,structureenzyme,polymerase,transferase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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