Equivalence class DNA_4.0_44558.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2I13|1|C+ 2I13|1|D (rep) | 5'-D(*CP*AP*GP*AP*TP*GP*TP*AP*GP*GP*GP*AP*AP*AP*AP*GP*CP*CP*CP*GP*GP*G)-3', 5'-D(*GP*CP*CP*CP*GP*GP*GP*CP*TP*TP*TP*TP*CP*CP*CP*TP*AP*CP*AP*TP*CP*T)-3' | Aart, a six finger zinc finger designed to recognize ANN triplets | X-ray diffraction | 1.96 | 2006-10-03 | ||||
| 2 | 2I13|1|E+ 2I13|1|F | 5'-D(*CP*AP*GP*AP*TP*GP*TP*AP*GP*GP*GP*AP*AP*AP*AP*GP*CP*CP*CP*GP*GP*G)-3', 5'-D(*GP*CP*CP*CP*GP*GP*GP*CP*TP*TP*TP*TP*CP*CP*CP*TP*AP*CP*AP*TP*CP*T)-3' | Aart, a six finger zinc finger designed to recognize ANN triplets | X-ray diffraction | 1.96 | 2006-10-03 | ||||
| 3 | 3MLN|1|C+ 3MLN|1|D | DNA (5'-D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP*AP*AP*G)-3') | synthetic construct | DNA binding domain of Early B-cell Factor 1 (Ebf1) bound to DNA (crystal form II) | X-ray diffraction | 2.4 | 2010-12-01 | |||
| 4 | 3M9E|1|C+ 3M9E|1|D | DNA (5'-D(*AP*TP*TP*GP*AP*CP*CP*TP*CP*AP*GP*CP*TP*GP*AP*GP*GP*TP*CP*AP*AP*T)-3') | Thyroid hormone beta DNA binding domain homodimer with inverted palindrome TRE | X-ray diffraction | 2.406 | 2010-08-18 | ||||
| 5 | 3M9E|1|G+ 3M9E|1|H | DNA (5'-D(*AP*TP*TP*GP*AP*CP*CP*TP*CP*AP*GP*CP*TP*GP*AP*GP*GP*TP*CP*AP*AP*T)-3') | Thyroid hormone beta DNA binding domain homodimer with inverted palindrome TRE | X-ray diffraction | 2.406 | 2010-08-18 | ||||
| 6 | 3IKT|1|C+ 3IKT|1|D | Rex operator DNA | Crystal structure of a Rex-family repressor/DNA/NAD+ complex from Thermus aquaticus | X-ray diffraction | 2.26 | 2010-06-09 | ||||
| 7 | 1P47|1|C+ 1P47|1|D | 5'-D(*CP*AP*CP*GP*CP*CP*CP*AP*CP*GP*CP*CP*GP*CP*CP*CP*AP*CP*GP*CP*CP*A)-3', 5'-D(*GP*TP*GP*GP*CP*GP*TP*GP*GP*GP*CP*GP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3' | Crystal Structure of tandem Zif268 molecules complexed to DNA | X-ray diffraction | 2.2 | 2003-06-24 | ||||
| 8 | 2B9S|1|E+ 2B9S|1|D+ 2B9S|1|C | 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*TP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3', 5'-D(*AP*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3' | Crystal Structure of heterodimeric L. donovani topoisomerase I-vanadate-DNA complex | X-ray diffraction | 2.27 | 2006-01-17 | ||||
| 9 | 3MX4|1|I+ 3MX4|1|J | DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q | X-ray diffraction | 2.5 | 2010-09-08 | ||||
| 10 | 3MX4|1|K+ 3MX4|1|L | DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q | X-ray diffraction | 2.5 | 2010-09-08 | ||||
| 11 | 3MX4|1|M+ 3MX4|1|N | DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q | X-ray diffraction | 2.5 | 2010-09-08 | ||||
| 12 | 3MX4|1|O+ 3MX4|1|P | DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q | X-ray diffraction | 2.5 | 2010-09-08 | ||||
| 13 | 3IL2|1|C+ 3IL2|1|D | Rex operator DNA | Crystal structure of a Rex-family repressor R90D mutant/DNA complex from Thermus aquaticus | X-ray diffraction | 2.49 | 2010-06-09 | ||||
| 14 | 3C25|1|C+ 3C25|1|D | DNA (5'-D(*DCP*DGP*DGP*DAP*DGP*DGP*DCP*DGP*DCP*DGP*DGP*DCP*DCP*DGP*DCP*DGP*DCP*DCP*DGP*DCP*DCP*DG)-3'), DNA (5'-D(*DCP*DGP*DGP*DCP*DGP*DGP*DCP*DGP*DCP*DGP*DGP*DCP*DCP*DGP*DCP*DGP*DCP*DCP*DTP*DCP*DCP*DG)-3') | Crystal Structure of NotI Restriction Endonuclease Bound to Cognate DNA | X-ray diffraction | 2.5 | 2008-02-12 | ||||
| 15 | 3MLP|1|C+ 3MLP|1|D | DNA (5'-D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP*AP*AP*G)-3') | synthetic construct | Early B-cell Factor 1 (Ebf1) bound to DNA | X-ray diffraction | 2.8 | 2010-12-01 | |||
| 16 | 3MLP|1|G+ 3MLP|1|H | DNA (5'-D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP*AP*AP*G)-3') | synthetic construct | Early B-cell Factor 1 (Ebf1) bound to DNA | X-ray diffraction | 2.8 | 2010-12-01 | |||
| 17 | 3MLO|1|C+ 3MLO|1|D | DNA (5'-D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP*AP*AP*G)-3') | synthetic construct | DNA binding domain of Early B-cell Factor 1 (Ebf1) bound to DNA (Crystal form I) | X-ray diffraction | 3.01 | 2010-12-01 | |||
| 18 | 2V1U|1|B+ 2V1U|1|C | 5'-D(*AP*CP*CP*CP*CP*TP*CP*CP*GP*TP *TP*TP*CP*CP*TP*GP*TP*GP*GP*AP*GP*A)-3', 5'-D(*TP*CP*TP*CP*CP*AP*CP*AP*GP*GP *AP*AP*AP*CP*GP*GP*AP*GP*GP*GP*GP*T)-3' | Aeropyrum pernix | STRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA | X-ray diffraction | 3.1 | 2007-09-18 | |||
| 19 | 3NIC|1|I+ 3NIC|1|J | DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F | X-ray diffraction | 2.8 | 2010-09-08 | ||||
| 20 | 3NIC|1|K+ 3NIC|1|L | DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F | X-ray diffraction | 2.8 | 2010-09-08 | ||||
| 21 | 3NIC|1|M+ 3NIC|1|N | DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F | X-ray diffraction | 2.8 | 2010-09-08 | ||||
| 22 | 3NIC|1|O+ 3NIC|1|P | DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F | X-ray diffraction | 2.8 | 2010-09-08 | ||||
| 23 | 1R49|1|B+ 1R49|1|C | 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*AP*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(P*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*TP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' | Human topoisomerase I (Topo70) double mutant K532R/Y723F | X-ray diffraction | 3.13 | 2003-12-16 | ||||
| 24 | 1A31|1|C+ 1A31|1|D | DNA (5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*5IUP*5IU*TP*GP*AP*AP*AP*AP*AP*5IUP*5IUP*5IUP*5IUP*T)-3'), DNA (5'-D(*AP*AP*AP*AP*AP*TP*5IUP*5IUP*5IUP*5IUP*CP*AP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3') | HUMAN RECONSTITUTED DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX | X-ray diffraction | 2.1 | 1998-08-28 | ||||
| 25 | 1K4T|1|D+ 1K4T|1|C+ 1K4T|1|B | 5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' | HUMAN DNA TOPOISOMERASE I (70 KDA) IN COMPLEX WITH THE POISON TOPOTECAN AND COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX | X-ray diffraction | 2.1 | 2002-12-04 | ||||
| 26 | 1A35|1|C+ 1A35|1|D | DNA (5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*AP*GP*AP*AP*AP*AP*AP*(BRU)P*(BRU)P*TP*TP*T)-3'), DNA (5'-D(*AP*AP*AP*AP*AP*TP*+UP*+UP*+UP*+UP*CP*+UP*AP*AP*GP*TP*CP*TP*TP*TP*+ UP*T)-3') | HUMAN TOPOISOMERASE I/DNA COMPLEX | X-ray diffraction | 2.5 | 1998-08-28 | ||||
| 27 | 1REP|1|A+ 1REP|1|B | DNA (5'-D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*T)-3'), DNA (5'-D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*T)-3') | CRYSTAL STRUCTURE OF REPLICATION INITIATOR PROTEIN REPE54 OF MINI-F PLASMID COMPLEXED WITH AN ITERON DNA | X-ray diffraction | 2.6 | 2000-02-09 | ||||
| 28 | 1HF0|1|M+ 1HF0|1|N | DNA 5'-D(*CP*AP*CP*AP*TP*TP*TP*GP*AP*AP*AP*GP*GP* CP*AP*AP*AP*TP*GP*GP*AP*G)-3', DNA 5'-D(*CP*TP*CP*CP*AP*TP*TP*TP*GP*CP*CP*TP*TP* TP*CP*AP*AP*AP*TP*GP*TP*G)-3' | Crystal structure of the DNA-binding domain of Oct-1 bound to DNA as a dimer | X-ray diffraction | 2.7 | 2001-11-10 | ||||
| 29 | 1A36|1|B+ 1A36|1|C | DNA (5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*AP*GP*AP*AP*AP*AP*A P*TP*TP*TP*TP*T)- 3'), DNA (5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*TP*AP*AP*GP*TP*C P*TP*TP*TP*TP*T)- 3') | TOPOISOMERASE I/DNA COMPLEX | X-ray diffraction | 2.8 | 1998-08-12 | ||||
| 30 | 1AN2|1|B | DNA (5'-D(*GP*TP*GP*TP*AP*GP*GP*TP*CP*AP*CP*GP*TP*GP*AP*CP*C P*TP*AP*CP*AP*C)- 3') | Mus musculus | RECOGNITION BY MAX OF ITS COGNATE DNA THROUGH A DIMERIC B/HLH/Z DOMAIN | X-ray diffraction | 2.9 | 1997-09-17 | |||
| 31 | 1T8I|1|D+ 1T8I|1|C+ 1T8I|1|B | 5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' | Human DNA Topoisomerase I (70 Kda) In Complex With The Poison Camptothecin and Covalent Complex With A 22 Base Pair DNA Duplex | X-ray diffraction | 3 | 2005-05-31 | ||||
| 32 | 1SC7|1|D+ 1SC7|1|C+ 1SC7|1|B | 5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' | Human DNA Topoisomerase I (70 Kda) In Complex With The Indenoisoquinoline MJ-II-38 and Covalent Complex With A 22 Base Pair DNA Duplex | X-ray diffraction | 3 | 2005-04-19 | ||||
| 33 | 1SEU|1|D+ 1SEU|1|C+ 1SEU|1|B | 5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' | Human DNA Topoisomerase I (70 Kda) In Complex With The Indolocarbazole SA315F and Covalent Complex With A 22 Base Pair DNA Duplex | X-ray diffraction | 3 | 2005-04-19 | ||||
| 34 | 1TL8|1|D+ 1TL8|1|C+ 1TL8|1|B | 5'-D(*(TPC)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' | Human DNA topoisomerase I (70 kDa) in complex with the indenoisoquinoline AI-III-52 and covalent complex with a 22 base pair DNA duplex | X-ray diffraction | 3.1 | 2005-06-21 | ||||
| 35 | 1LPQ|1|B+ 1LPQ|1|C | 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*(8OG)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' | Human DNA Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair DNA Duplex Containing an 8-oxoG Lesion | X-ray diffraction | 3.14 | 2002-08-16 | ||||
| 36 | 1K4S|1|D+ 1K4S|1|C+ 1K4S|1|B | 5'-D(*(SPT)P*GP*AP*AP*AP*AP*AP*(5IU)P*(5IU)P*(5IU)P*(5IU)P*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*(5IU)P*(5IU))-3', 5'-D(*AP*AP*AP*AP*AP*TP*(IDO)UP*(IDO)UP*(IDO)UP*(IDO)UP*CP*AP*AP*AP*GP*(IDO)UP*CP*(IDO)UP*(IDO)UP*(IDO)UP*(IDO)UP*T)-3' | HUMAN DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX | X-ray diffraction | 3.2 | 2002-12-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 2V1U|1|B+ 2V1U|1|C | STRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA | X-RAY DIFFRACTION | 3.1 | 22 | double helix,structure | cell cycle,regulatory | |
| 2 | 3C25|1|C+ 3C25|1|D | Crystal Structure of NotI Restriction Endonuclease Bound to Cognate DNA | X-RAY DIFFRACTION | 2.5 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 3 | 1SC7|1|D+ 1SC7|1|C+ 1SC7|1|B | Human DNA Topoisomerase I (70 Kda) In Complex With The Indenoisoquinoline MJ-II-38 and Covalent Complex With A 22 Base Pair DNA Duplex | X-RAY DIFFRACTION | 3 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 4 | 1T8I|1|D+ 1T8I|1|C+ 1T8I|1|B | Human DNA Topoisomerase I (70 Kda) In Complex With The Poison Camptothecin and Covalent Complex With A 22 Base Pair DNA Duplex | X-RAY DIFFRACTION | 3 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 5 | 1K4T|1|D+ 1K4T|1|C+ 1K4T|1|B | HUMAN DNA TOPOISOMERASE I (70 KDA) IN COMPLEX WITH THE POISON TOPOTECAN AND COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX | X-RAY DIFFRACTION | 2.1 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 6 | 1TL8|1|D+ 1TL8|1|C+ 1TL8|1|B | Human DNA topoisomerase I (70 kDa) in complex with the indenoisoquinoline AI-III-52 and covalent complex with a 22 base pair DNA duplex | X-RAY DIFFRACTION | 3.1 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 7 | 1SEU|1|D+ 1SEU|1|C+ 1SEU|1|B | Human DNA Topoisomerase I (70 Kda) In Complex With The Indolocarbazole SA315F and Covalent Complex With A 22 Base Pair DNA Duplex | X-RAY DIFFRACTION | 3 | 22 | double helix,structure | enzyme,isomerase | |
| 8 | 3MX4|1|K+ 3MX4|1|L | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q | X-RAY DIFFRACTION | 2.5 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 9 | 3MX4|1|O+ 3MX4|1|P | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q | X-RAY DIFFRACTION | 2.5 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 10 | 3NIC|1|I+ 3NIC|1|J | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F | X-RAY DIFFRACTION | 2.8 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 11 | 3NIC|1|O+ 3NIC|1|P | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F | X-RAY DIFFRACTION | 2.8 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 12 | 3NIC|1|M+ 3NIC|1|N | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F | X-RAY DIFFRACTION | 2.8 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 13 | 3NIC|1|K+ 3NIC|1|L | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F | X-RAY DIFFRACTION | 2.8 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 14 | 3MX4|1|M+ 3MX4|1|N | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q | X-RAY DIFFRACTION | 2.5 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 15 | 3MX4|1|I+ 3MX4|1|J | DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q | X-RAY DIFFRACTION | 2.5 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 16 | 1HF0|1|M+ 1HF0|1|N | Crystal structure of the DNA-binding domain of Oct-1 bound to DNA as a dimer | X-RAY DIFFRACTION | 2.7 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 17 | 3M9E|1|G+ 3M9E|1|H | Thyroid hormone beta DNA binding domain homodimer with inverted palindrome TRE | X-RAY DIFFRACTION | 2.406 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 18 | 3M9E|1|C+ 3M9E|1|D | Thyroid hormone beta DNA binding domain homodimer with inverted palindrome TRE | X-RAY DIFFRACTION | 2.406 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 19 | 1K4S|1|D+ 1K4S|1|C+ 1K4S|1|B | HUMAN DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX | X-RAY DIFFRACTION | 3.2 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 20 | 2B9S|1|E+ 2B9S|1|D+ 2B9S|1|C | Crystal Structure of heterodimeric L. donovani topoisomerase I-vanadate-DNA complex | X-RAY DIFFRACTION | 2.27 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 21 | 3IKT|1|C+ 3IKT|1|D | Crystal structure of a Rex-family repressor/DNA/NAD+ complex from Thermus aquaticus | X-RAY DIFFRACTION | 2.26 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 22 | 3IL2|1|C+ 3IL2|1|D | Crystal structure of a Rex-family repressor R90D mutant/DNA complex from Thermus aquaticus | X-RAY DIFFRACTION | 2.49 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 23 | 1A36|1|B+ 1A36|1|C | TOPOISOMERASE I/DNA COMPLEX | X-RAY DIFFRACTION | 2.8 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 24 | 1R49|1|B+ 1R49|1|C | Human topoisomerase I (Topo70) double mutant K532R/Y723F | X-RAY DIFFRACTION | 3.13 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 25 | 1LPQ|1|B+ 1LPQ|1|C | Human DNA Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair DNA Duplex Containing an 8-oxoG Lesion | X-RAY DIFFRACTION | 3.14 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 26 | 1A35|1|C+ 1A35|1|D | HUMAN TOPOISOMERASE I/DNA COMPLEX | X-RAY DIFFRACTION | 2.5 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 27 | 1A31|1|C+ 1A31|1|D | HUMAN RECONSTITUTED DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX | X-RAY DIFFRACTION | 2.1 | 22 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 28 | 1AN2|1|B | RECOGNITION BY MAX OF ITS COGNATE DNA THROUGH A DIMERIC B/HLH/Z DOMAIN | X-RAY DIFFRACTION | 2.9 | 22 | double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription | |
| 29 | 1P47|1|C+ 1P47|1|D | Crystal Structure of tandem Zif268 molecules complexed to DNA | X-RAY DIFFRACTION | 2.2 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 30 | 2I13|1|E+ 2I13|1|F | Aart, a six finger zinc finger designed to recognize ANN triplets | X-RAY DIFFRACTION | 1.96 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 31 | 2I13|1|C+ 2I13|1|D | Aart, a six finger zinc finger designed to recognize ANN triplets | X-RAY DIFFRACTION | 1.96 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 32 | 3MLN|1|C+ 3MLN|1|D | DNA binding domain of Early B-cell Factor 1 (Ebf1) bound to DNA (crystal form II) | X-RAY DIFFRACTION | 2.4 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription | |
| 33 | 3MLO|1|C+ 3MLO|1|D | DNA binding domain of Early B-cell Factor 1 (Ebf1) bound to DNA (Crystal form I) | X-RAY DIFFRACTION | 3.01 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription | |
| 34 | 3MLP|1|G+ 3MLP|1|H | Early B-cell Factor 1 (Ebf1) bound to DNA | X-RAY DIFFRACTION | 2.8 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 35 | 3MLP|1|C+ 3MLP|1|D | Early B-cell Factor 1 (Ebf1) bound to DNA | X-RAY DIFFRACTION | 2.8 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 36 | 1REP|1|A+ 1REP|1|B | CRYSTAL STRUCTURE OF REPLICATION INITIATOR PROTEIN REPE54 OF MINI-F PLASMID COMPLEXED WITH AN ITERON DNA | X-RAY DIFFRACTION | 2.6 | 22 | B-form double helix,double helix,structure | DNA replication/repair,regulatory |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: