Equivalence class DNA_4.0_47060.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3Q23|1|C (rep) | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II | X-ray diffraction | 1.8 | 20 | 2011-02-16 | ||||
| 2 | 3Q23|1|D | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II | X-ray diffraction | 1.8 | 21 | 2011-02-16 | ||||
| 3 | 3Q24|1|C | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | synthetic construct | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex | X-ray diffraction | 1.81 | 21 | 2011-02-16 | |||
| 4 | 3Q24|1|D | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | synthetic construct | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex | X-ray diffraction | 1.81 | 22 | 2011-02-16 | |||
| 5 | 3Q22|1|C | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I | X-ray diffraction | 2.11 | 20 | 2011-02-16 | ||||
| 6 | 3Q22|1|D | DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3') | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I | X-ray diffraction | 2.11 | 21 | 2011-02-16 | ||||
| 7 | 3C46|1|C | P2_7a Promoter DNA | X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2 | X-ray diffraction | 2 | 20 | 2008-12-09 | ||||
| 8 | 3C46|1|D | P2_7a Promoter DNA | X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2 | X-ray diffraction | 2 | 21 | 2008-12-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 3C46|1|D | X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2 | X-RAY DIFFRACTION | 2 | 21 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase | |
| 2 | 3C46|1|C | X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2 | X-RAY DIFFRACTION | 2 | 20 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase | |
| 3 | 3Q24|1|D | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex | X-RAY DIFFRACTION | 1.81 | 22 | enzyme,polymerase,transferase | ||
| 4 | 3Q22|1|C | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I | X-RAY DIFFRACTION | 2.11 | 20 | enzyme,polymerase,transferase | ||
| 5 | 3Q24|1|C | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex | X-RAY DIFFRACTION | 1.81 | 21 | enzyme,polymerase,transferase | ||
| 6 | 3Q23|1|C | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II | X-RAY DIFFRACTION | 1.8 | 20 | enzyme,polymerase,transferase | ||
| 7 | 3Q23|1|D | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II | X-RAY DIFFRACTION | 1.8 | 21 | enzyme,polymerase,transferase | ||
| 8 | 3Q22|1|D | X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I | X-RAY DIFFRACTION | 2.11 | 21 | enzyme,polymerase,transferase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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