Equivalence class DNA_4.0_54583.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2ITL|1|C (rep) | 24-nt PEN element of the SV40 DNA origin | The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp) | X-ray diffraction | 1.65 | 2006-12-12 | ||||
| 2 | 2ITL|1|W | 24-nt PEN element of the SV40 DNA origin | The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp) | X-ray diffraction | 1.65 | 2006-12-12 | ||||
| 3 | 1H6F|1|C+ 1H6F|1|D | 5'-D(*TP*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP* AP*GP*GP*TP*GP*TP*GP*AP*AP*AP*T)-3' | synthetic construct | Human TBX3, a transcription factor responsible for ulnar-mammary syndrome, bound to a palindromic DNA site | X-ray diffraction | 1.7 | 2002-04-19 | |||
| 4 | 1XBR|1|C+ 1XBR|1|D | DNA (5'-D(*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP*AP*GP*GP*TP*G P*TP*GP*AP*AP*AP* TP*T)-3') | T DOMAIN FROM XENOPUS LAEVIS BOUND TO DNA | X-ray diffraction | 2.5 | 1998-01-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1XBR|1|C+ 1XBR|1|D | T DOMAIN FROM XENOPUS LAEVIS BOUND TO DNA | X-RAY DIFFRACTION | 2.5 | 24 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 2 | 2ITL|1|C | The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp) | X-RAY DIFFRACTION | 1.65 | 24 | double helix,feature,mispair,structure | DNA replication/repair,enzyme,helicase,hydrolase,regulatory | |
| 3 | 2ITL|1|W | The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp) | X-RAY DIFFRACTION | 1.65 | 24 | double helix,feature,mispair,structure | DNA replication/repair,enzyme,helicase,hydrolase,regulatory | |
| 4 | 1H6F|1|C+ 1H6F|1|D | Human TBX3, a transcription factor responsible for ulnar-mammary syndrome, bound to a palindromic DNA site | X-RAY DIFFRACTION | 1.7 | 24 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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