#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13OYM|1|C+ 3OYM|1|D (rep)DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV N224H mutant intasome bound to manganeseX-ray diffraction2.02362010-11-17
23OY9|1|C+ 3OY9|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolutionX-ray diffraction2.55362010-10-20
33OYF|1|C+ 3OYF|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI L-870,810X-ray diffraction2.51362010-11-17
43OYL|1|C+ 3OYL|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217H mutant intasome bound to magnesium and the INSTI MK2048X-ray diffraction2.54362010-11-17
53OYG|1|C+ 3OYG|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound1 (CompoundG)X-ray diffraction2.56362010-11-17
63OYB|1|C+ 3OYB|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK2048X-ray diffraction2.54362010-11-17
73OYC|1|C+ 3OYC|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI PICAX-ray diffraction2.66362010-11-17
82ASD|1|E+ 2ASD|1|D5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'oxoG-modified Insertion Ternary ComplexX-ray diffraction1.95302006-01-10
93OYA|1|C+ 3OYA|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolutionX-ray diffraction2.65362010-10-20
103OYD|1|C+ 3OYD|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI GS9160X-ray diffraction2.54362010-11-17
113OYN|1|C+ 3OYN|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV N224H mutant intasome bound to magnesium and the INSTI MK2048X-ray diffraction2.68362010-11-17
122C9L|1|A+ 2C9L|1|B5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*CP *TP*CP*AP*TP*GP*AP*AP*GP*T)-3', 5'-D(*AP*CP*TP*TP*CP*AP*CP*TP*GP*AP *GP*TP*CP*AP*GP*TP*GP*CP*T)-3'human gammaherpesvirus 4Structure of the Epstein-Barr virus ZEBRA proteinX-ray diffraction2.25372006-02-21
133OYE|1|C+ 3OYE|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound2X-ray diffraction2.74362010-11-17
142H7H|1|X+ 2H7H|1|Y5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3', 5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3'Crystal structure of the JUN BZIP homodimer complexed with AP-1 DNAX-ray diffraction2.3382007-06-12
151IGN|1|C+ 1IGN|1|DDNA (5'-D(*CP*CP*GP*CP*AP*CP*AP*CP*CP*CP*AP*CP*AP*CP*AP*CP*C P*AP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G P*CP*G)-3')DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITEX-ray diffraction2.25381997-01-27
163KMD|1|E+ 3KMD|1|F5'-D(*GP*GP*GP*CP*AP*TP*GP*CP*CP*TP*AP*GP*GP*CP*AP*TP*GP*CP*C)-3'Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramerX-ray diffraction2.15382010-02-23
171IGN|1|E+ 1IGN|1|FDNA (5'-D(*CP*CP*GP*CP*AP*CP*AP*CP*CP*CP*AP*CP*AP*CP*AP*CP*C P*AP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G P*CP*G)-3')DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITEX-ray diffraction2.25371997-01-27
183OYK|1|C+ 3OYK|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217H mutant intasome bound to manganeseX-ray diffraction2.72362010-11-17
193OS0|1|C+ 3OS0|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')PFV strand transfer complex (STC) at 2.81 A resolutionX-ray diffraction2.81362010-11-17
203OYJ|1|C+ 3OYJ|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217Q mutant intasome in complex with magnesium and the INSTI MK2048X-ray diffraction2.68362010-11-17
213OYI|1|C+ 3OYI|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217Q mutant intasome in complex with manganeseX-ray diffraction2.72362010-11-17
223OYH|1|C+ 3OYH|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK0536X-ray diffraction2.74362010-11-17
233L2R|1|C+ 3L2R|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesiumX-ray diffraction2.88362010-02-09
243K9F|1|F+ 3K9F|1|H+ 3K9F|1|E+ 3K9F|1|GDNA (5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3'), DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3'), DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3')Detailed structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerasesX-ray diffraction2.9362009-10-27
253KSA|1|F+ 3KSA|1|H+ 3KSA|1|E+ 3KSA|1|G5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3', 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3', 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3', 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3'Detailed structural insight into the DNA cleavage complex of type IIA topoisomerases (cleaved form)X-ray diffraction3.3362010-05-05
263KQU|1|N5'-D(*T*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal a Ratchet Translocation MechanismX-ray diffraction2.4182010-01-26
273L2U|1|C+ 3L2U|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and GS9137 (Elvitegravir)X-ray diffraction3.15362010-02-09
283KQU|1|M5'-D(*T*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'Three Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal a Ratchet Translocation MechanismX-ray diffraction2.4182010-01-26
292ASJ|1|E+ 2ASJ|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'oxoG-modified Preinsertion Binary ComplexX-ray diffraction2.35262006-01-10
302R8G|1|T+ 2R8G|1|P5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DT)-3', 5'-D(*DTP*DCP*DAP*DCP*(P)P*DGP*DAP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3'Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-ray diffraction2.7312008-07-22
312ASJ|1|J+ 2ASJ|1|H5'-D(*CP*TP*AP*AP*CP*(8OG)*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'oxoG-modified Preinsertion Binary ComplexX-ray diffraction2.35262006-01-10
323LTN|1|F+ 3LTN|1|H+ 3LTN|1|E+ 3LTN|1|G5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3', 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3', 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3', 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3'Inhibitor-stabilized topoisomerase IV-DNA cleavage complex (S. pneumoniae)X-ray diffraction3.1362010-05-05
332ASD|1|J+ 2ASD|1|H5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'oxoG-modified Insertion Ternary ComplexX-ray diffraction1.95322006-01-10
343L2Q|1|C+ 3L2Q|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in apo formX-ray diffraction3.25362010-02-09
351CRX|1|D+ 1CRX|1|EDNA (5'-D(*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(P*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*GP*C)-3')CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE IX-ray diffraction2.4341998-10-14
363L2W|1|C+ 3L2W|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and GS9137 (Elvitegravir)X-ray diffraction3.2362010-02-09
372ASL|1|E+ 2ASL|1|D5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'oxoG-modified Postinsertion Binary ComplexX-ray diffraction2.65312006-01-10
383OS1|1|C+ 3OS1|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*(2DA))-3')PFV target capture complex (TCC) at 2.97 A resolutionX-ray diffraction2.97362010-11-17
392ASL|1|J+ 2ASL|1|H5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'oxoG-modified Postinsertion Binary ComplexX-ray diffraction2.65312006-01-10
403OS2|1|C+ 3OS2|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')PFV target capture complex (TCC) at 3.32 A resolutionX-ray diffraction3.32362010-11-17
412ATL|1|E+ 2ATL|1|D5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'Unmodified Insertion Ternary ComplexX-ray diffraction2.8302006-01-10
423L2V|1|C+ 3L2V|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir)X-ray diffraction3.2362010-02-09
433KHR|1|E+ 3KHR|1|D5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*CP*(DDG))-3'Dpo4 post-extension ternary complex with the correct C opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.01302010-02-16
443KHH|1|E+ 3KHH|1|D5'-D(*CP*CP*TP*A*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'Dpo4 extension ternary complex with a C base opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.7292010-02-16
453KHH|1|J+ 3KHH|1|H5'-D(*CP*CP*TP*A*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'Dpo4 extension ternary complex with a C base opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.7302010-02-16
463GII|1|E+ 3GII|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformationX-ray diffraction2.6312009-05-19
473PT6|1|D+ 3PT6|1|JDNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3')Crystal structure of mouse DNMT1(650-1602) in complex with DNAX-ray diffraction3382010-12-29
483PT6|1|C+ 3PT6|1|IDNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3')Crystal structure of mouse DNMT1(650-1602) in complex with DNAX-ray diffraction3382010-12-29
493KHR|1|J+ 3KHR|1|H5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*CP*(DDG))-3'Dpo4 post-extension ternary complex with the correct C opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.01312010-02-16
503KHG|1|E+ 3KHG|1|D5'-D(*C*CP*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.96322010-02-16
511H9T|1|X+ 1H9T|1|Y5'-D(*CP*AP*TP*CP*TP*GP*GP*TP*AP*CP*GP*AP* CP*CP*AP*GP*AP*TP*C)-3', 5'-D(*GP*AP*TP*CP*TP*GP*GP*TP*CP*GP*TP*AP* CP*CP*AP*GP*AP*TP*G)-3'FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATORX-ray diffraction3.25382001-04-04
523PTA|1|B+ 3PTA|1|CDNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3')Crystal structure of human DNMT1(646-1600) in complex with DNAX-ray diffraction3.6382010-12-29
532RGR|1|D+ 2RGR|1|CDNATopoisomerase IIA bound to G-segment DNAX-ray diffraction3342007-12-25
542ATL|1|J+ 2ATL|1|H5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'Unmodified Insertion Ternary ComplexX-ray diffraction2.8322006-01-10
553FOF|1|F+ 3FOF|1|H+ 3FOF|1|E+ 3FOF|1|GDNA (5'-D(P*AP*CP*CP*AP*AP*GP*GP*TP*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3'), DNA (5'-D(P*CP*TP*GP*TP*TP*TP*TP*AP*CP*GP*TP*GP*CP*AP*T)-3'), DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3')Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerasesX-ray diffraction4682009-02-24
561Y1W|1|T+ 1Y1W|1|P+ 1Y1W|1|N5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3'Complete RNA Polymerase II elongation complexX-ray diffraction4362005-01-04
573KHG|1|J+ 3KHG|1|H5'-D(*C*CP*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.96182010-02-16
581ZR2|1|J+ 1ZR2|1|KTCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAsX-ray diffraction3.9322005-08-30
592HMI|1|E+ 2HMI|1|FDNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3')HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEXX-ray diffraction2.8371998-10-14
601ZR2|1|X+ 1ZR2|1|YTCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAsX-ray diffraction3.9322005-08-30
611J5O|1|T+ 1J5O|1|P5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3'CRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMERX-ray diffraction3.5372002-06-14
621LAT|1|C+ 1LAT|1|DDNA (5'-D(*TP*TP*CP*CP*AP*GP*AP*AP*CP*AP*TP*GP*TP*TP*CP*TP*G P*GP*A)-3')GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEXX-ray diffraction1.9381996-04-03
631ZR4|1|X+ 1ZR4|1|Y+ 1ZR4|1|ZAAA, TCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-ray diffraction3.4352005-08-30
641ZR4|1|U+ 1ZR4|1|V+ 1ZR4|1|WAAA, TCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-ray diffraction3.4352005-08-30
651ZR4|1|M+ 1ZR4|1|N+ 1ZR4|1|OAAA, TCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-ray diffraction3.4352005-08-30
661ZR4|1|J+ 1ZR4|1|K+ 1ZR4|1|IAAA, TCAGTGTCCGATAATTTAT, TTATCGGACACTGStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-ray diffraction3.4352005-08-30
672AU0|1|E+ 2AU0|1|D5'-D(*CP*TP*AP*AP*CP*G*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'Unmodified preinsertion binary complexX-ray diffraction2.7262006-01-10
682AU0|1|J+ 2AU0|1|H5'-D(*CP*TP*AP*AP*CP*G*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3'Unmodified preinsertion binary complexX-ray diffraction2.7262006-01-10
691NGM|1|G+ 1NGM|1|H5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3'Crystal structure of a yeast Brf1-TBP-DNA ternary complexX-ray diffraction2.95382003-03-25
701NGM|1|K+ 1NGM|1|L5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3'Crystal structure of a yeast Brf1-TBP-DNA ternary complexX-ray diffraction2.95382003-03-25
711NGM|1|O+ 1NGM|1|P5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3'Crystal structure of a yeast Brf1-TBP-DNA ternary complexX-ray diffraction2.95382003-03-25
721NGM|1|C+ 1NGM|1|D5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3'Crystal structure of a yeast Brf1-TBP-DNA ternary complexX-ray diffraction2.95382003-03-25
731NKP|1|F+ 1NKP|1|G5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Myc-Max recognizing DNAX-ray diffraction1.8382003-02-04
741TRO|1|I+ 1TRO|1|JDNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3')CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTIONX-ray diffraction1.9381994-01-31
751TRO|1|K+ 1TRO|1|LDNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3')CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTIONX-ray diffraction1.9381994-01-31
761MJO|1|F+ 1MJO|1|GCONSENSUS DNA OPERATOR DUPLEX WITH THE CENTRAL TA STEP MUTATED TO ATMETHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO ATX-ray diffraction2.1381999-08-02
771MJQ|1|E+ 1MJQ|1|FMUTATED MET CONSENSUS OPERATOR DUPLEXMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCEX-ray diffraction2.4381999-08-02
781MJ2|1|F+ 1MJ2|1|GDNA (5'-D(*TP*TP*AP*GP*AP*CP*GP*TP*CP*TP*AP*GP*AP*CP*GP*TP*CP*TP*A)-3')METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCEX-ray diffraction2.4381999-08-02
792DRP|1|B+ 2DRP|1|CDNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*GP*GP*AP*TP*AP*AP*CP*GP*TP*C P*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*GP*TP*TP*AP*TP*CP*CP*TP*TP*AP*T P*TP*A)-3')THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITIONX-ray diffraction2.8381994-08-31
802DRP|1|E+ 2DRP|1|FDNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*GP*GP*AP*TP*AP*AP*CP*GP*TP*C P*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*GP*TP*TP*AP*TP*CP*CP*TP*TP*AP*T P*TP*A)-3')THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITIONX-ray diffraction2.8381994-08-31
811D66|1|D+ 1D66|1|EDNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*AP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*TP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3')DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEXX-ray diffraction2.7381992-03-06
821B01|1|E+ 1B01|1|FDNA (5'-D(*CP*CP*CP*GP*TP*GP*CP*AP*CP*TP*CP*AP*AP*TP*GP*CP*AP*AP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*GP*CP*AP*TP*TP*GP*AP*GP*TP*GP*CP*AP*CP*GP*G)-3')TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEXX-ray diffraction2.56381999-11-19
831R4R|1|C+ 1R4R|1|D5'-D(*CP*TP*GP*AP*GP*AP*AP*CP*AP*TP*CP*AP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*CP*A)-3'Crystallographic analysis of the interaction of the glucocorticoid receptor with DNAX-ray diffraction3382003-10-28
841R4O|1|C+ 1R4O|1|D5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*CP*TP*G)-3'Crystallographic analysis of the interaction of the glucocorticoid receptor with DNAX-ray diffraction2.5382003-10-21
851MJQ|1|K+ 1MJQ|1|LMUTATED MET CONSENSUS OPERATOR DUPLEXMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCEX-ray diffraction2.4381999-08-02
861SRS|1|C+ 1SRS|1|WDNA (5'-D(*CP*CP*(5IU)P*TP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*CP*CP*AP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*TP*GP*GP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*A P*AP*G)-3')SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNAX-ray diffraction3.2381995-07-28
872DGC|1|BDNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3')GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNAX-ray diffraction2.2191996-03-08
881GLU|1|C+ 1GLU|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*C P*TP*G)-3')CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNAX-ray diffraction2.9381994-01-31
891DGC|1|BDNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3')THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITYX-ray diffraction3191994-06-22

Release history

Release0.6
Date2011-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
13KQU|1|NThree Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal a Ratchet Translocation MechanismX-RAY DIFFRACTION2.418enzyme,helicase,hydrolase
23KQU|1|MThree Conformational Snapshots of the Hepatitis C Virus NS3 Helicase Reveal a Ratchet Translocation MechanismX-RAY DIFFRACTION2.418enzyme,helicase,hydrolase
32ATL|1|J+ 2ATL|1|HUnmodified Insertion Ternary ComplexX-RAY DIFFRACTION2.832B-form double helix,double helix,structureenzyme,polymerase,transferase
43OYM|1|C+ 3OYM|1|DCrystal structure of the PFV N224H mutant intasome bound to manganeseX-RAY DIFFRACTION2.0236enzyme,recombinase
53OS1|1|C+ 3OS1|1|DPFV target capture complex (TCC) at 2.97 A resolutionX-RAY DIFFRACTION2.9736enzyme,recombinase
63OS2|1|C+ 3OS2|1|DPFV target capture complex (TCC) at 3.32 A resolutionX-RAY DIFFRACTION3.3236enzyme,recombinase
73OYK|1|C+ 3OYK|1|DCrystal structure of the PFV S217H mutant intasome bound to manganeseX-RAY DIFFRACTION2.7236enzyme,recombinase
83OYN|1|C+ 3OYN|1|DCrystal structure of the PFV N224H mutant intasome bound to magnesium and the INSTI MK2048X-RAY DIFFRACTION2.6836enzyme,recombinase
93OYC|1|C+ 3OYC|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI PICAX-RAY DIFFRACTION2.6636enzyme,recombinase
103OYA|1|C+ 3OYA|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolutionX-RAY DIFFRACTION2.6536enzyme,recombinase
113OYD|1|C+ 3OYD|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI GS9160X-RAY DIFFRACTION2.5436enzyme,recombinase
123OYF|1|C+ 3OYF|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI L-870,810X-RAY DIFFRACTION2.5136enzyme,recombinase
133OYH|1|C+ 3OYH|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK0536X-RAY DIFFRACTION2.7436enzyme,recombinase
143OYE|1|C+ 3OYE|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound2X-RAY DIFFRACTION2.7436enzyme,recombinase
153OYB|1|C+ 3OYB|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK2048X-RAY DIFFRACTION2.5436enzyme,recombinase
163OYG|1|C+ 3OYG|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound1 (CompoundG)X-RAY DIFFRACTION2.5636enzyme,recombinase
173OYJ|1|C+ 3OYJ|1|DCrystal structure of the PFV S217Q mutant intasome in complex with magnesium and the INSTI MK2048X-RAY DIFFRACTION2.6836enzyme,recombinase
183OYI|1|C+ 3OYI|1|DCrystal structure of the PFV S217Q mutant intasome in complex with manganeseX-RAY DIFFRACTION2.7236enzyme,recombinase
193OY9|1|C+ 3OY9|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolutionX-RAY DIFFRACTION2.5536enzyme,recombinase
203L2R|1|C+ 3L2R|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesiumX-RAY DIFFRACTION2.8836enzyme,recombinase
213L2Q|1|C+ 3L2Q|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in apo formX-RAY DIFFRACTION3.2536enzyme,recombinase
223OS0|1|C+ 3OS0|1|DPFV strand transfer complex (STC) at 2.81 A resolutionX-RAY DIFFRACTION2.8136enzyme,recombinase
233OYL|1|C+ 3OYL|1|DCrystal structure of the PFV S217H mutant intasome bound to magnesium and the INSTI MK2048X-RAY DIFFRACTION2.5436enzyme,recombinase
243L2V|1|C+ 3L2V|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir)X-RAY DIFFRACTION3.236enzyme,recombinase
253L2U|1|C+ 3L2U|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and GS9137 (Elvitegravir)X-RAY DIFFRACTION3.1536enzyme,recombinase
263L2W|1|C+ 3L2W|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and GS9137 (Elvitegravir)X-RAY DIFFRACTION3.236enzyme,recombinase
273KHH|1|E+ 3KHH|1|DDpo4 extension ternary complex with a C base opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.729B-form double helix,double helix,structureenzyme,polymerase,transferase
281CRX|1|D+ 1CRX|1|ECRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE IX-RAY DIFFRACTION2.434enzyme,recombinase
291IGN|1|C+ 1IGN|1|DDNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITEX-RAY DIFFRACTION2.2538DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
301IGN|1|E+ 1IGN|1|FDNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITEX-RAY DIFFRACTION2.2537DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
311R4O|1|C+ 1R4O|1|DCrystallographic analysis of the interaction of the glucocorticoid receptor with DNAX-RAY DIFFRACTION2.538B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
321R4R|1|C+ 1R4R|1|DCrystallographic analysis of the interaction of the glucocorticoid receptor with DNAX-RAY DIFFRACTION338double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
331NKP|1|F+ 1NKP|1|GCrystal structure of Myc-Max recognizing DNAX-RAY DIFFRACTION1.838B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
341DGC|1|BTHE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITYX-RAY DIFFRACTION319B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
352DGC|1|BGCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNAX-RAY DIFFRACTION2.219B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
362C9L|1|A+ 2C9L|1|BStructure of the Epstein-Barr virus ZEBRA proteinX-RAY DIFFRACTION2.2537B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
371H9T|1|X+ 1H9T|1|YFADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATORX-RAY DIFFRACTION3.2538double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
382DRP|1|B+ 2DRP|1|CTHE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITIONX-RAY DIFFRACTION2.838B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
392DRP|1|E+ 2DRP|1|FTHE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITIONX-RAY DIFFRACTION2.838B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
401LAT|1|C+ 1LAT|1|DGLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEXX-RAY DIFFRACTION1.938B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
411D66|1|D+ 1D66|1|EDNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEXX-RAY DIFFRACTION2.738double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
423KMD|1|E+ 3KMD|1|FCrystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramerX-RAY DIFFRACTION2.1538B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
433PT6|1|C+ 3PT6|1|ICrystal structure of mouse DNMT1(650-1602) in complex with DNAX-RAY DIFFRACTION338B-form double helix,double helix,structureenzyme,methylase,transferase
443PT6|1|D+ 3PT6|1|JCrystal structure of mouse DNMT1(650-1602) in complex with DNAX-RAY DIFFRACTION338B-form double helix,double helix,structureenzyme,methylase,transferase
452H7H|1|X+ 2H7H|1|YCrystal structure of the JUN BZIP homodimer complexed with AP-1 DNAX-RAY DIFFRACTION2.338B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
461TRO|1|I+ 1TRO|1|JCRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTIONX-RAY DIFFRACTION1.938B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor
471TRO|1|K+ 1TRO|1|LCRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTIONX-RAY DIFFRACTION1.938B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor
481MJ2|1|F+ 1MJ2|1|GMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCEX-RAY DIFFRACTION2.438DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
491MJO|1|F+ 1MJO|1|GMETHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO ATX-RAY DIFFRACTION2.138DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
501MJQ|1|E+ 1MJQ|1|FMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCEX-RAY DIFFRACTION2.438DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
511MJQ|1|K+ 1MJQ|1|LMETHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCEX-RAY DIFFRACTION2.438DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
521B01|1|E+ 1B01|1|FTRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEXX-RAY DIFFRACTION2.5638DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
531GLU|1|C+ 1GLU|1|DCRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNAX-RAY DIFFRACTION2.938B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
543PTA|1|B+ 3PTA|1|CCrystal structure of human DNMT1(646-1600) in complex with DNAX-RAY DIFFRACTION3.638B-form double helix,double helix,structureenzyme,methylase,transferase
551ZR2|1|J+ 1ZR2|1|KStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAsX-RAY DIFFRACTION3.932enzyme,recombinase
561ZR2|1|X+ 1ZR2|1|YStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAsX-RAY DIFFRACTION3.932enzyme,recombinase
571ZR4|1|M+ 1ZR4|1|N+ 1ZR4|1|OStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-RAY DIFFRACTION3.435enzyme,recombinase
581ZR4|1|X+ 1ZR4|1|Y+ 1ZR4|1|ZStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-RAY DIFFRACTION3.435enzyme,recombinase
591ZR4|1|J+ 1ZR4|1|K+ 1ZR4|1|IStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-RAY DIFFRACTION3.435enzyme,recombinase
601ZR4|1|U+ 1ZR4|1|V+ 1ZR4|1|WStructure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAsX-RAY DIFFRACTION3.435enzyme,recombinase
613KSA|1|F+ 3KSA|1|H+ 3KSA|1|E+ 3KSA|1|GDetailed structural insight into the DNA cleavage complex of type IIA topoisomerases (cleaved form)X-RAY DIFFRACTION3.336double helix,structureenzyme,isomerase
622RGR|1|D+ 2RGR|1|CTopoisomerase IIA bound to G-segment DNAX-RAY DIFFRACTION334B-form double helix,double helix,structureenzyme,isomerase
633FOF|1|F+ 3FOF|1|H+ 3FOF|1|E+ 3FOF|1|GStructural insight into the quinolone-DNA cleavage complex of type IIA topoisomerasesX-RAY DIFFRACTION468B-form double helix,double helix,structureenzyme,isomerase
643K9F|1|F+ 3K9F|1|H+ 3K9F|1|E+ 3K9F|1|GDetailed structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerasesX-RAY DIFFRACTION2.936double helix,structureenzyme,isomerase
653LTN|1|F+ 3LTN|1|H+ 3LTN|1|E+ 3LTN|1|GInhibitor-stabilized topoisomerase IV-DNA cleavage complex (S. pneumoniae)X-RAY DIFFRACTION3.136double helix,structureenzyme,isomerase
661SRS|1|C+ 1SRS|1|WSERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNAX-RAY DIFFRACTION3.238B-form double helix,double helix,structureDNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription
671J5O|1|T+ 1J5O|1|PCRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMERX-RAY DIFFRACTION3.537double helix,structureantibody,enzyme,immune system,polymerase,regulatory,transferase
682HMI|1|E+ 2HMI|1|FHIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEXX-RAY DIFFRACTION2.837double helix,structureantibody,enzyme,immune system,polymerase,regulatory,transferase
693KHG|1|J+ 3KHG|1|HDpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.9618double helix,structureenzyme,polymerase,transferase
703KHG|1|E+ 3KHG|1|DDpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.9632double helix,structureenzyme,polymerase,transferase
713GII|1|E+ 3GII|1|DDpo4 extension ternary complex with disordered A opposite an oxoG in anti conformationX-RAY DIFFRACTION2.631enzyme,polymerase,transferase
723KHH|1|J+ 3KHH|1|HDpo4 extension ternary complex with a C base opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.730B-form double helix,double helix,structureenzyme,polymerase,transferase
733KHR|1|E+ 3KHR|1|DDpo4 post-extension ternary complex with the correct C opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.0130B-form double helix,double helix,structureenzyme,polymerase,transferase
743KHR|1|J+ 3KHR|1|HDpo4 post-extension ternary complex with the correct C opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.0131B-form double helix,double helix,structureenzyme,polymerase,transferase
752R8G|1|T+ 2R8G|1|PSelectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-RAY DIFFRACTION2.731B-form double helix,double helix,structureenzyme,polymerase,transferase
762ASL|1|E+ 2ASL|1|DoxoG-modified Postinsertion Binary ComplexX-RAY DIFFRACTION2.6531B-form double helix,double helix,structureenzyme,polymerase,transferase
772ASL|1|J+ 2ASL|1|HoxoG-modified Postinsertion Binary ComplexX-RAY DIFFRACTION2.6531B-form double helix,double helix,structureenzyme,polymerase,transferase
782ASD|1|E+ 2ASD|1|DoxoG-modified Insertion Ternary ComplexX-RAY DIFFRACTION1.9530B-form double helix,double helix,structureenzyme,polymerase,transferase
792ASD|1|J+ 2ASD|1|HoxoG-modified Insertion Ternary ComplexX-RAY DIFFRACTION1.9532B-form double helix,double helix,structureenzyme,polymerase,transferase
802ASJ|1|E+ 2ASJ|1|DoxoG-modified Preinsertion Binary ComplexX-RAY DIFFRACTION2.3526double helix,structureenzyme,polymerase,transferase
812AU0|1|E+ 2AU0|1|DUnmodified preinsertion binary complexX-RAY DIFFRACTION2.726double helix,structureenzyme,polymerase,transferase
822ATL|1|E+ 2ATL|1|DUnmodified Insertion Ternary ComplexX-RAY DIFFRACTION2.830B-form double helix,double helix,structureenzyme,polymerase,transferase
832ASJ|1|J+ 2ASJ|1|HoxoG-modified Preinsertion Binary ComplexX-RAY DIFFRACTION2.3526double helix,structureenzyme,polymerase,transferase
842AU0|1|J+ 2AU0|1|HUnmodified preinsertion binary complexX-RAY DIFFRACTION2.726double helix,structureenzyme,polymerase,transferase
851NGM|1|C+ 1NGM|1|DCrystal structure of a yeast Brf1-TBP-DNA ternary complexX-RAY DIFFRACTION2.9538double helix,structureβ-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription
861NGM|1|G+ 1NGM|1|HCrystal structure of a yeast Brf1-TBP-DNA ternary complexX-RAY DIFFRACTION2.9538double helix,structureβ-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription
871NGM|1|K+ 1NGM|1|LCrystal structure of a yeast Brf1-TBP-DNA ternary complexX-RAY DIFFRACTION2.9538double helix,structureβ-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription
881NGM|1|O+ 1NGM|1|PCrystal structure of a yeast Brf1-TBP-DNA ternary complexX-RAY DIFFRACTION2.9538double helix,structureβ-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription
891Y1W|1|T+ 1Y1W|1|P+ 1Y1W|1|NComplete RNA Polymerase II elongation complexX-RAY DIFFRACTION436enzyme,polymerase,transferase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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