#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13JXB|1|A+ 3JXB|1|B (rep)5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9CX-ray diffraction1.67402010-01-19
22R1J|1|A+ 2R1J|1|B5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3', 5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3'Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9TX-ray diffraction1.53402008-04-29
33JXC|1|A+ 3JXC|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+X-ray diffraction1.9402010-01-19
43JXD|1|A+ 3JXD|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+X-ray diffraction2.1402010-01-19
52HAN|1|C+ 2HAN|1|D5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP*AP*CP*TP*TP*GP*T)-3', 5'-D(*GP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*AP*AP*CP*CP*CP*TP*T)-3'Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoterX-ray diffraction1.95402007-05-22
63MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|GDNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3')Cre recombinase-DNA transition stateX-ray diffraction2.29702010-05-26
73MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|LDNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3')Cre recombinase-DNA transition stateX-ray diffraction2.29702010-05-26
82VY1|1|W5'-D(*TP*TP*AP*CP*GP*GP*AP*CP*CP*AP *CP*TP*GP*GP*TP*CP*CP*TP*TP*CP)-3'Arabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoterX-ray diffraction2.104202008-09-23
92VY2|1|W5'-D(*AP*TP*TP*TP*AP*AP*TP*CP*CP*AP *AP*TP*GP*GP*TP*TP*AP*CP*AP*A)-3'Arabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoterX-ray diffraction2.3202008-09-23
101ZG5|1|C+ 1ZG5|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
111ZG5|1|G+ 1ZG5|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
121PUF|1|D+ 1PUF|1|E5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3'Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNAX-ray diffraction1.9402003-09-02
131A6Y|1|C+ 1A6Y|1|DDNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3')REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEXX-ray diffraction2.3401998-10-21
141GA5|1|C+ 1GA5|1|D5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.4402001-11-16
151GA5|1|G+ 1GA5|1|H5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.4402001-11-16
163C2I|1|B+ 3C2I|1|CDNA (5'-D(*DAP*DTP*DAP*DGP*DAP*DAP*DGP*DAP*DAP*DTP*DTP*DCP*(5CM)P*DGP*DTP*DTP*DCP*DCP*DAP*DG)-3'), DNA (5'-D(*DTP*DCP*DTP*DGP*DGP*DAP*DAP*(5CM)P*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DTP*DTP*DCP*DTP*DA)-3')The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNFX-ray diffraction2.5402008-05-13
171ZG1|1|C+ 1ZG1|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
181ZG1|1|G+ 1ZG1|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
192WTY|1|C+ 2WTY|1|DDNA (5'-D(*TP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP *GP*CP*AP*AP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*TP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP *GP*CP*AP*AP*TP*T)-3')Crystal structure of the homodimeric MafB in complex with the T-MARE binding siteX-ray diffraction2.9392010-12-08
203K5N|1|T+ 3K5N|1|PDNA (5'-D(*GP*TP*CP*CP*TP*GP*(3DR)*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*G)-3')Crystal structure of E.coli Pol II-abasic DNA binary complexX-ray diffraction3.15262010-02-02
211HLZ|1|C+ 1HLZ|1|D5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.8402001-11-16
223COQ|1|D+ 3COQ|1|EDNA (5'-D(*DAP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DAP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DTP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3')synthetic constructStructural Basis for Dimerization in DNA Recognition by Gal4X-ray diffraction2.4402008-07-01
231LE8|1|C+ 1LE8|1|D5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*CP*AP*TP*CP*A)-3', 5'-D(*TP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*AP*CP*AP*TP*G)-3'Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA ComplexX-ray diffraction2.3402002-05-03
241FLO|1|F+ 1FLO|1|ESYMMETRIZED FRT DNA SITESFLP Recombinase-Holliday Junction Complex IX-ray diffraction2.6502000-09-04
251FLO|1|H+ 1FLO|1|GSYMMETRIZED FRT DNA SITESFLP Recombinase-Holliday Junction Complex IX-ray diffraction2.6502000-09-04
261FLO|1|J+ 1FLO|1|ISYMMETRIZED FRT DNA SITESFLP Recombinase-Holliday Junction Complex IX-ray diffraction2.6502000-09-04
271FLO|1|L+ 1FLO|1|KSYMMETRIZED FRT DNA SITESFLP Recombinase-Holliday Junction Complex IX-ray diffraction2.6502000-09-04
283DZY|1|C+ 3DZY|1|FDNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3')Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 PeptideX-ray diffraction3.1402008-10-28
293E00|1|C+ 3E00|1|FDNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3')Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with GW9662, 9-cis Retinoic Acid and NCOA2 PeptideX-ray diffraction3.1402008-10-28
302H8R|1|E+ 2H8R|1|F5'-D(*CP*TP*TP*GP*GP*TP*TP*AP*AP*TP*AP*AP*TP*TP*CP*AP*CP*CP*AP*G)-3', 5'-D(*GP*CP*TP*GP*GP*TP*GP*AP*AP*TP*TP*AP*TP*TP*AP*AP*CP*CP*AP*A)-3'Hepatocyte Nuclear Factor 1b bound to DNA: MODY5 Gene ProductX-ray diffraction3.2402007-06-19
313DFX|1|X+ 3DFX|1|YDNA (5'-D(*DAP*DAP*DGP*DGP*DTP*DTP*DAP*DTP*DCP*DTP*DCP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DTP*DGP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DGP*DAP*DGP*DAP*DTP*DAP*DAP*DCP*DC)-3')Opposite GATA DNA bindingX-ray diffraction2.7402008-07-29
322R5Y|1|C+ 2R5Y|1|DDNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DTP*DAP*DGP*DAP*DG)-3')synthetic constructStructure of Scr/Exd complex bound to a consensus Hox-Exd siteX-ray diffraction2.6402008-02-05
332R5Z|1|C+ 2R5Z|1|DDNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DAP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DTP*DTP*DAP*DGP*DAP*DG)-3')synthetic constructStructure of Scr/Exd complex bound to a DNA sequence derived from the fkh geneX-ray diffraction2.6402008-02-05
341A02|1|A+ 1A02|1|BDNA (5'-D(*DAP*DAP*DCP*DTP*DAP*DTP*DGP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DTP*DTP*DTP*DTP*DCP*DC)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DCP*DAP*DTP*DAP*DG)-3')STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNAX-ray diffraction2.7401998-05-27
353DZU|1|C+ 3DZU|1|FDNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3')Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 PeptideX-ray diffraction3.2402008-10-28
363FHZ|1|G+ 3FHZ|1|H5'-D(*TP*GP*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*AP*CP*A)-3'Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-ray diffraction3.27402009-03-24
373FHZ|1|I+ 3FHZ|1|J5'-D(*TP*GP*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*AP*CP*A)-3'Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-ray diffraction3.27402009-03-24
383FHZ|1|K+ 3FHZ|1|L5'-D(*TP*GP*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*AP*CP*A)-3'Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-ray diffraction3.27402009-03-24
392Q2K|1|FDNA (5'-D(*AP*GP*TP*AP*TP*AP*(5IU)P*AP*CP*(5IU)P*AP*GP*TP*AP*TP*AP*TP*AP*CP*T)-3')Structure of nucleic-acid binding proteinX-ray diffraction3202008-02-05
401S9K|1|A+ 1S9K|1|BHuman IL-2 ARRE1 Promoter Element, Minus Strand, Human IL-2 ARRE1 Promoter Element, Plus StrandCrystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 SiteX-ray diffraction3.1402005-06-14
413DFV|1|Y+ 3DFV|1|ZDNA (5'-D(*DAP*DAP*DGP*DCP*DAP*DGP*DAP*DTP*DAP*DAP*DGP*DTP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DTP*DTP*DCP*DTP*DGP*DAP*DTP*DAP*DAP*DGP*DAP*DCP*DTP*DTP*DAP*DTP*DCP*DTP*DGP*DC)-3')Adjacent GATA DNA bindingX-ray diffraction3.1402008-07-29
422WIZ|1|C+ 2WIZ|1|DHALF-JUNCTIONsynthetic constructCrystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrateX-ray diffraction3.3402009-05-26
433BDN|1|CDNA (5'-D(*DAP*DAP*DTP*DAP*DCP*DCP*DAP*DCP*DTP*DGP*DGP*DCP*DGP*DGP*DTP*DGP*DAP*DTP*DAP*DT)-3')Crystal Structure of the Lambda RepressorX-ray diffraction3.909192008-04-15
443BDN|1|DDNA (5'-D(*DTP*DAP*DTP*DAP*DTP*DCP*DAP*DCP*DCP*DGP*DCP*DCP*DAP*DGP*DTP*DGP*DGP*DTP*DAP*DT)-3')Crystal Structure of the Lambda RepressorX-ray diffraction3.909192008-04-15
451L3L|1|E+ 1L3L|1|G5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3'Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-ray diffraction1.66402002-07-03
461L3L|1|F+ 1L3L|1|H5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3'Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-ray diffraction1.66402002-07-03
471LMB|1|1+ 1LMB|1|2DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3')REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEXX-ray diffraction1.8401991-11-05
481LLI|1|D+ 1LLI|1|EDNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3')THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKINGX-ray diffraction2.1401994-08-31
491JE8|1|C+ 1JE8|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-ray diffraction2.12402002-09-27
501JE8|1|G+ 1JE8|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-ray diffraction2.12402002-09-27
511JNM|1|C+ 1JNM|1|D5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3'Crystal Structure of the Jun/CRE ComplexX-ray diffraction2.2402003-06-03
521B72|1|D+ 1B72|1|EDNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3')PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEXX-ray diffraction2.35401999-02-19
532RAM|1|C+ 2RAM|1|DDNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*(5IU)P*(5IU)P*CP*CP*AP*GP*CP*CP*G)-3')A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-ray diffraction2.4401998-05-27
541RPE|1|A+ 1RPE|1|BDNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*AP*GP*AP*TP*AP*CP*AP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*TP*GP*TP*AP*TP*CP*TP*TP*GP*T P*TP*TP*G)-3')THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-ray diffraction2.5401994-01-31
553CRO|1|A+ 3CRO|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3')THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-ray diffraction2.5401991-10-15
561PER|1|A+ 1PER|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3')THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITESX-ray diffraction2.5401994-01-31
571HWT|1|A+ 1HWT|1|BDNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3')STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-ray diffraction2.5401999-11-10
582HAP|1|A+ 2HAP|1|BDNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3')STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATIONX-ray diffraction2.5401999-11-10
592OR1|1|A+ 2OR1|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3')RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTIONX-ray diffraction2.5401989-09-05
601UBD|1|A+ 1UBD|1|BDNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3')CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENTX-ray diffraction2.5401996-12-23
611HWT|1|E+ 1HWT|1|FDNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3')STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-ray diffraction2.5401999-11-10
621RAM|1|C+ 1RAM|1|DDNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*CP*CP*G)-3')A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-ray diffraction2.7401998-05-27
631FOK|1|B+ 1FOK|1|CDNA (5'-D(*AP*TP*GP*AP*CP*TP*AP*GP*CP*GP*TP*TP*AP*TP*CP*AP*T P*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*TP*GP*AP*TP*AP*AP*CP*GP*CP*TP*AP*G P*TP*CP*A)-3')Planomicrobium okeanokoitesSTRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNAX-ray diffraction2.8401997-12-03
641QP9|1|E+ 1QP9|1|FDNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3')STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7X-ray diffraction2.8402000-10-09
651QP9|1|G+ 1QP9|1|HDNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3')STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7X-ray diffraction2.8372000-10-09
661YSA|1|A+ 1YSA|1|BDNA (5'-D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*A P*GP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*A P*GP*TP*T)-3')THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEXX-ray diffraction2.9401993-10-31
671FOS|1|A+ 1FOS|1|BDNA (5'-D(*AP*AP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*AP*T)-3')TWO HUMAN C-FOS:C-JUN:DNA COMPLEXESX-ray diffraction3.05401995-07-10
681FOS|1|C+ 1FOS|1|DDNA (5'-D(*AP*AP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*AP*T)-3')TWO HUMAN C-FOS:C-JUN:DNA COMPLEXESX-ray diffraction3.05401995-07-10

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
11FLO|1|F+ 1FLO|1|EFLP Recombinase-Holliday Junction Complex IX-RAY DIFFRACTION2.650Holliday junction,structureenzyme,recombinase
21FLO|1|H+ 1FLO|1|GFLP Recombinase-Holliday Junction Complex IX-RAY DIFFRACTION2.650Holliday junction,structureenzyme,recombinase
31FLO|1|L+ 1FLO|1|KFLP Recombinase-Holliday Junction Complex IX-RAY DIFFRACTION2.650Holliday junction,structureenzyme,recombinase
41FLO|1|J+ 1FLO|1|IFLP Recombinase-Holliday Junction Complex IX-RAY DIFFRACTION2.650Holliday junction,structureenzyme,recombinase
51LE8|1|C+ 1LE8|1|DCrystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA ComplexX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
61JE8|1|C+ 1JE8|1|DTwo-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-RAY DIFFRACTION2.1240B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
71JE8|1|G+ 1JE8|1|HTwo-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-RAY DIFFRACTION2.1240B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
81ZG5|1|G+ 1ZG5|1|HNarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
91ZG5|1|C+ 1ZG5|1|DNarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
101ZG1|1|G+ 1ZG1|1|HNarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
111ZG1|1|C+ 1ZG1|1|DNarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
122Q2K|1|FStructure of nucleic-acid binding proteinX-RAY DIFFRACTION320double helix,structurecentromere,chromatin,structural
131L3L|1|E+ 1L3L|1|GCrystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-RAY DIFFRACTION1.6640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
141L3L|1|F+ 1L3L|1|HCrystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-RAY DIFFRACTION1.6640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
153JXB|1|A+ 3JXB|1|BCrystal structure of the P22 c2 repressor protein in complex with synthetic operator 9CX-RAY DIFFRACTION1.6740B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
163JXC|1|A+ 3JXC|1|BCrystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+X-RAY DIFFRACTION1.940B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
173JXD|1|A+ 3JXD|1|BCrystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+X-RAY DIFFRACTION2.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
182R1J|1|A+ 2R1J|1|BCrystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9TX-RAY DIFFRACTION1.5340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
193FHZ|1|I+ 3FHZ|1|JCrystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-RAY DIFFRACTION3.2740DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
203FHZ|1|K+ 3FHZ|1|LCrystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-RAY DIFFRACTION3.2740DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
213FHZ|1|G+ 3FHZ|1|HCrystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-RAY DIFFRACTION3.2740DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
223BDN|1|CCrystal Structure of the Lambda RepressorX-RAY DIFFRACTION3.90919DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
231LMB|1|1+ 1LMB|1|2REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEXX-RAY DIFFRACTION1.840B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
241LLI|1|D+ 1LLI|1|ETHE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKINGX-RAY DIFFRACTION2.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
253BDN|1|DCrystal Structure of the Lambda RepressorX-RAY DIFFRACTION3.90919DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
263DFV|1|Y+ 3DFV|1|ZAdjacent GATA DNA bindingX-RAY DIFFRACTION3.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
272HAN|1|C+ 2HAN|1|DStructural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoterX-RAY DIFFRACTION1.9540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
283CRO|1|A+ 3CRO|1|BTHE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
291RPE|1|A+ 1RPE|1|BTHE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
302OR1|1|A+ 2OR1|1|BRECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTIONX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
311PER|1|A+ 1PER|1|BTHE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITESX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
321FOK|1|B+ 1FOK|1|CSTRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNAX-RAY DIFFRACTION2.840B-form double helix,double helix,structureenzyme,hydrolase,nuclease
332WTY|1|C+ 2WTY|1|DCrystal structure of the homodimeric MafB in complex with the T-MARE binding siteX-RAY DIFFRACTION2.939B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
343DFX|1|X+ 3DFX|1|YOpposite GATA DNA bindingX-RAY DIFFRACTION2.740B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
353COQ|1|D+ 3COQ|1|EStructural Basis for Dimerization in DNA Recognition by Gal4X-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
361FOS|1|C+ 1FOS|1|DTWO HUMAN C-FOS:C-JUN:DNA COMPLEXESX-RAY DIFFRACTION3.0540B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
371B72|1|D+ 1B72|1|EPBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEXX-RAY DIFFRACTION2.3540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
381UBD|1|A+ 1UBD|1|BCO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENTX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
391JNM|1|C+ 1JNM|1|DCrystal Structure of the Jun/CRE ComplexX-RAY DIFFRACTION2.240B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
401FOS|1|A+ 1FOS|1|BTWO HUMAN C-FOS:C-JUN:DNA COMPLEXESX-RAY DIFFRACTION3.0540B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
413C2I|1|B+ 3C2I|1|CThe Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNFX-RAY DIFFRACTION2.540B-form double helix,double helix,structurechromatin,structural
421YSA|1|A+ 1YSA|1|BTHE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEXX-RAY DIFFRACTION2.940DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
432VY1|1|WStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoterX-RAY DIFFRACTION2.10420B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
442VY2|1|WStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoterX-RAY DIFFRACTION2.320B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
452H8R|1|E+ 2H8R|1|FHepatocyte Nuclear Factor 1b bound to DNA: MODY5 Gene ProductX-RAY DIFFRACTION3.240double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
463E00|1|C+ 3E00|1|FIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with GW9662, 9-cis Retinoic Acid and NCOA2 PeptideX-RAY DIFFRACTION3.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
473DZY|1|C+ 3DZY|1|FIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 PeptideX-RAY DIFFRACTION3.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
483DZU|1|C+ 3DZU|1|FIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 PeptideX-RAY DIFFRACTION3.240B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
491A6Y|1|C+ 1A6Y|1|DREVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEXX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
501GA5|1|C+ 1GA5|1|DCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
511GA5|1|G+ 1GA5|1|HCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
521HLZ|1|C+ 1HLZ|1|DCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.840B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
533K5N|1|T+ 3K5N|1|PCrystal structure of E.coli Pol II-abasic DNA binary complexX-RAY DIFFRACTION3.1526double helix,structureenzyme,polymerase,transferase
542WIZ|1|C+ 2WIZ|1|DCrystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrateX-RAY DIFFRACTION3.340Holliday junction,structureenzyme,hydrolase,nuclease
551PUF|1|D+ 1PUF|1|ECrystal Structure of HoxA9 and Pbx1 homeodomains bound to DNAX-RAY DIFFRACTION1.940B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
561A02|1|A+ 1A02|1|BSTRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNAX-RAY DIFFRACTION2.740B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,immunoglobulin (Ig) fold,leucine zipper (bZIP),regulatory,rel homology,transcription
571S9K|1|A+ 1S9K|1|BCrystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 SiteX-RAY DIFFRACTION3.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,immunoglobulin (Ig) fold,leucine zipper (bZIP),regulatory,rel homology,transcription
582R5Z|1|C+ 2R5Z|1|DStructure of Scr/Exd complex bound to a DNA sequence derived from the fkh geneX-RAY DIFFRACTION2.640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
592R5Y|1|C+ 2R5Y|1|DStructure of Scr/Exd complex bound to a consensus Hox-Exd siteX-RAY DIFFRACTION2.640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
601RAM|1|C+ 1RAM|1|DA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-RAY DIFFRACTION2.740double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
612RAM|1|C+ 2RAM|1|DA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
621HWT|1|A+ 1HWT|1|BSTRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
631HWT|1|E+ 1HWT|1|FSTRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
641QP9|1|G+ 1QP9|1|HSTRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7X-RAY DIFFRACTION2.837B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
652HAP|1|A+ 2HAP|1|BSTRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATIONX-RAY DIFFRACTION2.540double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
661QP9|1|E+ 1QP9|1|FSTRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7X-RAY DIFFRACTION2.840B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
673MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|GCre recombinase-DNA transition stateX-RAY DIFFRACTION2.2970enzyme,recombinase
683MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|LCre recombinase-DNA transition stateX-RAY DIFFRACTION2.2970enzyme,recombinase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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