#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|G (rep)DNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3')Cre recombinase-DNA transition stateX-ray diffraction2.29702010-05-26
23MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|LDNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3')Cre recombinase-DNA transition stateX-ray diffraction2.29702010-05-26
33JXC|1|A+ 3JXC|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+X-ray diffraction1.9402010-01-19
41MUS|1|B+ 1MUS|1|CDNA non-transferred strand, DNA transferred strandcrystal structure of Tn5 transposase complexed with resolved outside end DNAX-ray diffraction1.9402002-09-27
52R1J|1|A+ 2R1J|1|B5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3', 5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3'Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9TX-ray diffraction1.53402008-04-29
63JXB|1|A+ 3JXB|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9CX-ray diffraction1.67402010-01-19
72XCS|1|E+ 2XCS|1|F5'-5UA*D(GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP *CP*TP*AP*CP*GP*GP*CP*T)-3'synthetic constructThe 2.1A crystal structure of S. aureus Gyrase complex with GSK299423 and DNAX-ray diffraction2.1392010-08-04
82HAN|1|C+ 2HAN|1|D5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP*AP*CP*TP*TP*GP*T)-3', 5'-D(*GP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*AP*AP*CP*CP*CP*TP*T)-3'Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoterX-ray diffraction1.95402007-05-22
93JXD|1|A+ 3JXD|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+X-ray diffraction2.1402010-01-19
101MUH|1|B+ 1MUH|1|CDNA NON-TRANSFERRED STRAND, DNA TRANSFERRED STRANDCRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNAX-ray diffraction2.3402002-09-27
111ZG5|1|G+ 1ZG5|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
121ZG5|1|C+ 1ZG5|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
131GA5|1|G+ 1GA5|1|H5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.4402001-11-16
143COQ|1|D+ 3COQ|1|EDNA (5'-D(*DAP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DAP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DTP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3')synthetic constructStructural Basis for Dimerization in DNA Recognition by Gal4X-ray diffraction2.4402008-07-01
151GA5|1|C+ 1GA5|1|D5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.4402001-11-16
161ZG1|1|C+ 1ZG1|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
171ZG1|1|G+ 1ZG1|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
183C2I|1|B+ 3C2I|1|CDNA (5'-D(*DAP*DTP*DAP*DGP*DAP*DAP*DGP*DAP*DAP*DTP*DTP*DCP*(5CM)P*DGP*DTP*DTP*DCP*DCP*DAP*DG)-3'), DNA (5'-D(*DTP*DCP*DTP*DGP*DGP*DAP*DAP*(5CM)P*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DTP*DTP*DCP*DTP*DA)-3')The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNFX-ray diffraction2.5402008-05-13
191PUF|1|D+ 1PUF|1|E5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3'Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNAX-ray diffraction1.9402003-09-02
203K5M|1|T+ 3K5M|1|PDNA (5'-D(*AP*GP*TP*CP*CP*TP*GP*(3DR)P*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*G)-3')Crystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complexX-ray diffraction2.04332010-02-02
211A6Y|1|C+ 1A6Y|1|DDNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3')REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEXX-ray diffraction2.3401998-10-21
221LE8|1|C+ 1LE8|1|D5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*CP*AP*TP*CP*A)-3', 5'-D(*TP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*AP*CP*AP*TP*G)-3'Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA ComplexX-ray diffraction2.3402002-05-03
233E00|1|C+ 3E00|1|FDNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3')Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with GW9662, 9-cis Retinoic Acid and NCOA2 PeptideX-ray diffraction3.1402008-10-28
241HLZ|1|C+ 1HLZ|1|D5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.8402001-11-16
251A02|1|A+ 1A02|1|BDNA (5'-D(*DAP*DAP*DCP*DTP*DAP*DTP*DGP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DTP*DTP*DTP*DTP*DCP*DC)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DCP*DAP*DTP*DAP*DG)-3')STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNAX-ray diffraction2.7401998-05-27
262WTY|1|C+ 2WTY|1|DDNA (5'-D(*TP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP *GP*CP*AP*AP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*TP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP *GP*CP*AP*AP*TP*T)-3')Crystal structure of the homodimeric MafB in complex with the T-MARE binding siteX-ray diffraction2.9392010-12-08
272VY1|1|W5'-D(*TP*TP*AP*CP*GP*GP*AP*CP*CP*AP *CP*TP*GP*GP*TP*CP*CP*TP*TP*CP)-3'Arabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoterX-ray diffraction2.104202008-09-23
283DZY|1|C+ 3DZY|1|FDNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3')Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 PeptideX-ray diffraction3.1402008-10-28
292R5Y|1|C+ 2R5Y|1|DDNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DTP*DAP*DGP*DAP*DG)-3')synthetic constructStructure of Scr/Exd complex bound to a consensus Hox-Exd siteX-ray diffraction2.6402008-02-05
302XCR|1|V+ 2XCR|1|W5'-D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP *GP*CP*TP)-3'synthetic constructThe 3.5A crystal structure of the catalytic core (B'A' region) of Staphylococcus aureus DNA Gyrase complexed with GSK299423 and DNAX-ray diffraction3.5382010-08-04
313DZU|1|C+ 3DZU|1|FDNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3')Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 PeptideX-ray diffraction3.2402008-10-28
321S9K|1|A+ 1S9K|1|BHuman IL-2 ARRE1 Promoter Element, Minus Strand, Human IL-2 ARRE1 Promoter Element, Plus StrandCrystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 SiteX-ray diffraction3.1402005-06-14
333ECP|1|B+ 3ECP|1|CDNA non-transferred strand, DNA transferred strandCrystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNAX-ray diffraction2.5402008-10-21
342VY2|1|W5'-D(*AP*TP*TP*TP*AP*AP*TP*CP*CP*AP *AP*TP*GP*GP*TP*TP*AP*CP*AP*A)-3'Arabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoterX-ray diffraction2.3202008-09-23
352XCR|1|E+ 2XCR|1|F5'-D(*5UA*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP *GP*CP*TP)-3'synthetic constructThe 3.5A crystal structure of the catalytic core (B'A' region) of Staphylococcus aureus DNA Gyrase complexed with GSK299423 and DNAX-ray diffraction3.5402010-08-04
363FHZ|1|K+ 3FHZ|1|L5'-D(*TP*GP*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*AP*CP*A)-3'Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-ray diffraction3.27402009-03-24
372R5Z|1|C+ 2R5Z|1|DDNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DAP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DTP*DTP*DAP*DGP*DAP*DG)-3')synthetic constructStructure of Scr/Exd complex bound to a DNA sequence derived from the fkh geneX-ray diffraction2.6402008-02-05
383DFV|1|Y+ 3DFV|1|ZDNA (5'-D(*DAP*DAP*DGP*DCP*DAP*DGP*DAP*DTP*DAP*DAP*DGP*DTP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DG)-3'), DNA (5'-D(*DTP*DTP*DCP*DTP*DGP*DAP*DTP*DAP*DAP*DGP*DAP*DCP*DTP*DTP*DAP*DTP*DCP*DTP*DGP*DC)-3')Adjacent GATA DNA bindingX-ray diffraction3.1402008-07-29
393GLG|1|M+ 3GLG|1|NDNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3')Crystal Structure of a Mutant (gammaT157A) E. coli Clamp Loader Bound to Primer-Template DNAX-ray diffraction3.25242009-05-26
402C62|1|C5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP *TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'Crystal Structure of the Human Transcription Cofactor PC4 in Complex with Single-Stranded DNAX-ray diffraction1.74162006-01-11
413GLG|1|K+ 3GLG|1|LDNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3')Crystal Structure of a Mutant (gammaT157A) E. coli Clamp Loader Bound to Primer-Template DNAX-ray diffraction3.25242009-05-26
423DFX|1|X+ 3DFX|1|YDNA (5'-D(*DAP*DAP*DGP*DGP*DTP*DTP*DAP*DTP*DCP*DTP*DCP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DTP*DGP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DGP*DAP*DGP*DAP*DTP*DAP*DAP*DCP*DC)-3')Opposite GATA DNA bindingX-ray diffraction2.7402008-07-29
432Q2K|1|FDNA (5'-D(*AP*GP*TP*AP*TP*AP*(5IU)P*AP*CP*(5IU)P*AP*GP*TP*AP*TP*AP*TP*AP*CP*T)-3')Structure of nucleic-acid binding proteinX-ray diffraction3202008-02-05
443KHL|1|J+ 3KHL|1|H5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*AP*(DDG))-3'Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.1312010-02-16
452H8R|1|E+ 2H8R|1|F5'-D(*CP*TP*TP*GP*GP*TP*TP*AP*AP*TP*AP*AP*TP*TP*CP*AP*CP*CP*AP*G)-3', 5'-D(*GP*CP*TP*GP*GP*TP*GP*AP*AP*TP*TP*AP*TP*TP*AP*AP*CP*CP*AP*A)-3'Hepatocyte Nuclear Factor 1b bound to DNA: MODY5 Gene ProductX-ray diffraction3.2402007-06-19
463KHL|1|E+ 3KHL|1|D5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*AP*(DDG))-3'Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-ray diffraction2.1302010-02-16
473FHZ|1|G+ 3FHZ|1|H5'-D(*TP*GP*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*AP*CP*A)-3'Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-ray diffraction3.27402009-03-24
482PE5|1|D+ 2PE5|1|EDNA (5'-D(*DAP*DAP*DTP*DTP*DGP*DTP*DGP*DAP*DGP*DCP*DGP*DCP*DTP*DCP*DAP*DCP*DAP*DAP*DTP*DT)-3')synthetic constructCrystal Structure of the Lac Repressor bound to ONPG in repressed stateX-ray diffraction3.5342008-03-18
492ZHG|1|BDNA (5'-D(*DGP*DCP*DCP*DTP*DCP*DAP*DAP*DGP*DTP*DTP*DAP*DAP*DCP*DTP*DTP*DGP*DAP*DGP*DGP*DC)-3')Crystal structure of SoxR in complex with DNAX-ray diffraction2.8202008-03-25
503FHZ|1|I+ 3FHZ|1|J5'-D(*TP*GP*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*AP*CP*A)-3'Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-ray diffraction3.27402009-03-24
512FDC|1|C5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP*CP*CP*GP*CP*AP*A)-3'Structural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complexX-ray diffraction3.3122006-03-14
522FDC|1|D5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP*CP*CP*GP*CP*AP*A)-3'Structural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complexX-ray diffraction3.352006-03-14
532WIZ|1|C+ 2WIZ|1|DHALF-JUNCTIONsynthetic constructCrystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrateX-ray diffraction3.3402009-05-26
543DSC|1|BDNA (5'-D(P*DCP*DAP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DGP*DTP*DGP*DAP*DC)-3')Crystal structure of P. furiosus Mre11 DNA synaptic complexX-ray diffraction2.7172008-10-14
553BDN|1|CDNA (5'-D(*DAP*DAP*DTP*DAP*DCP*DCP*DAP*DCP*DTP*DGP*DGP*DCP*DGP*DGP*DTP*DGP*DAP*DTP*DAP*DT)-3')Crystal Structure of the Lambda RepressorX-ray diffraction3.909192008-04-15
563BDN|1|DDNA (5'-D(*DTP*DAP*DTP*DAP*DTP*DCP*DAP*DCP*DCP*DGP*DCP*DCP*DAP*DGP*DTP*DGP*DGP*DTP*DAP*DT)-3')Crystal Structure of the Lambda RepressorX-ray diffraction3.909192008-04-15
573K5N|1|T+ 3K5N|1|PDNA (5'-D(*GP*TP*CP*CP*TP*GP*(3DR)*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*G)-3')Crystal structure of E.coli Pol II-abasic DNA binary complexX-ray diffraction3.15262010-02-02
582PE5|1|FDNA (5'-D(*DAP*DAP*DTP*DTP*DGP*DTP*DGP*DAP*DGP*DCP*DGP*DCP*DTP*DCP*DAP*DCP*DAP*DAP*DTP*DT)-3')synthetic constructCrystal Structure of the Lac Repressor bound to ONPG in repressed stateX-ray diffraction3.5172008-03-18
591JE8|1|G+ 1JE8|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-ray diffraction2.12402002-09-27
601JE8|1|C+ 1JE8|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-ray diffraction2.12402002-09-27
613CRO|1|A+ 3CRO|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3')THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-ray diffraction2.5401991-10-15
621B72|1|D+ 1B72|1|EDNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3')PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEXX-ray diffraction2.35401999-02-19
632RAM|1|C+ 2RAM|1|DDNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*(5IU)P*(5IU)P*CP*CP*AP*GP*CP*CP*G)-3')A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-ray diffraction2.4401998-05-27
646CRO|1|R+ 6CRO|1|UDNA (5'-D(*AP*CP*TP*AP*TP*CP*AP*CP*CP*GP*CP*GP*GP*GP*TP*GP*AP*TP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*AP*TP*CP*AP*CP*CP*CP*GP*CP*GP*GP*TP*GP*AP*TP*AP*G)-3')CRYSTAL STRUCTURE OF LAMBDA-CRO BOUND TO A CONSENSUS OPERATOR AT 3.0 ANGSTROM RESOLUTIONX-ray diffraction3401998-09-18
651RAM|1|C+ 1RAM|1|DDNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*CP*CP*G)-3')A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-ray diffraction2.7401998-05-27
661L3L|1|F+ 1L3L|1|H5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3'Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-ray diffraction1.66402002-07-03
671LMB|1|1+ 1LMB|1|2DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3')REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEXX-ray diffraction1.8401991-11-05
681L3L|1|E+ 1L3L|1|G5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3'Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-ray diffraction1.66402002-07-03
691LLI|1|D+ 1LLI|1|EDNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3')THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKINGX-ray diffraction2.1401994-08-31
701JNM|1|C+ 1JNM|1|D5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3'Crystal Structure of the Jun/CRE ComplexX-ray diffraction2.2402003-06-03
711HWT|1|A+ 1HWT|1|BDNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3')STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-ray diffraction2.5401999-11-10
722HAP|1|A+ 2HAP|1|BDNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3')STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATIONX-ray diffraction2.5401999-11-10
731HWT|1|E+ 1HWT|1|FDNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3')STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-ray diffraction2.5401999-11-10
741MSW|1|T+ 1MSW|1|RRNA message, Template DNAStructural basis for the transition from initiation to elongation transcription in T7 RNA polymeraseX-ray diffraction2.1302002-11-15
751PER|1|A+ 1PER|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3')THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITESX-ray diffraction2.5401994-01-31
761YSA|1|A+ 1YSA|1|BDNA (5'-D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*A P*GP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*A P*GP*TP*T)-3')THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEXX-ray diffraction2.9401993-10-31
771UBD|1|A+ 1UBD|1|BDNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3')CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENTX-ray diffraction2.5401996-12-23
781RPE|1|A+ 1RPE|1|BDNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*AP*GP*AP*TP*AP*CP*AP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*TP*GP*TP*AP*TP*CP*TP*TP*GP*T P*TP*TP*G)-3')THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-ray diffraction2.5401994-01-31
791FOK|1|B+ 1FOK|1|CDNA (5'-D(*AP*TP*GP*AP*CP*TP*AP*GP*CP*GP*TP*TP*AP*TP*CP*AP*T P*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*TP*GP*AP*TP*AP*AP*CP*GP*CP*TP*AP*G P*TP*CP*A)-3')Planomicrobium okeanokoitesSTRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNAX-ray diffraction2.8401997-12-03
802OR1|1|A+ 2OR1|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3')RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTIONX-ray diffraction2.5401989-09-05
811MM8|1|B+ 1MM8|1|CME DNA non-transferred strand, ME DNA transferred strandCrystal structure of Tn5 Transposase complexed with ME DNAX-ray diffraction2.8402002-12-13
821FOS|1|A+ 1FOS|1|BDNA (5'-D(*AP*AP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*AP*T)-3')TWO HUMAN C-FOS:C-JUN:DNA COMPLEXESX-ray diffraction3.05401995-07-10
831QP9|1|E+ 1QP9|1|FDNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3')STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7X-ray diffraction2.8402000-10-09
841FOS|1|C+ 1FOS|1|DDNA (5'-D(*AP*AP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*AP*T)-3')TWO HUMAN C-FOS:C-JUN:DNA COMPLEXESX-ray diffraction3.05401995-07-10
851QP9|1|G+ 1QP9|1|HDNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3')STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7X-ray diffraction2.8372000-10-09

Release history

Release0.6
Date2011-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
12XCS|1|E+ 2XCS|1|FThe 2.1A crystal structure of S. aureus Gyrase complex with GSK299423 and DNAX-RAY DIFFRACTION2.139double helix,structureenzyme,isomerase
22XCR|1|E+ 2XCR|1|FThe 3.5A crystal structure of the catalytic core (B'A' region) of Staphylococcus aureus DNA Gyrase complexed with GSK299423 and DNAX-RAY DIFFRACTION3.540double helix,structureenzyme,isomerase
32XCR|1|V+ 2XCR|1|WThe 3.5A crystal structure of the catalytic core (B'A' region) of Staphylococcus aureus DNA Gyrase complexed with GSK299423 and DNAX-RAY DIFFRACTION3.538double helix,structureenzyme,isomerase
41LE8|1|C+ 1LE8|1|DCrystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA ComplexX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
51ZG5|1|C+ 1ZG5|1|DNarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
61ZG5|1|G+ 1ZG5|1|HNarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
71ZG1|1|G+ 1ZG1|1|HNarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
81ZG1|1|C+ 1ZG1|1|DNarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
91JE8|1|C+ 1JE8|1|DTwo-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-RAY DIFFRACTION2.1240B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
101JE8|1|G+ 1JE8|1|HTwo-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-RAY DIFFRACTION2.1240B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
112Q2K|1|FStructure of nucleic-acid binding proteinX-RAY DIFFRACTION320double helix,structurecentromere,chromatin,structural
121L3L|1|E+ 1L3L|1|GCrystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-RAY DIFFRACTION1.6640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
131L3L|1|F+ 1L3L|1|HCrystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-RAY DIFFRACTION1.6640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
143FHZ|1|I+ 3FHZ|1|JCrystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-RAY DIFFRACTION3.2740DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
153FHZ|1|K+ 3FHZ|1|LCrystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-RAY DIFFRACTION3.2740DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
163FHZ|1|G+ 3FHZ|1|HCrystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginineX-RAY DIFFRACTION3.2740DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
173JXB|1|A+ 3JXB|1|BCrystal structure of the P22 c2 repressor protein in complex with synthetic operator 9CX-RAY DIFFRACTION1.6740B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
183JXC|1|A+ 3JXC|1|BCrystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+X-RAY DIFFRACTION1.940B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
193JXD|1|A+ 3JXD|1|BCrystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+X-RAY DIFFRACTION2.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
202R1J|1|A+ 2R1J|1|BCrystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9TX-RAY DIFFRACTION1.5340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
211FOK|1|B+ 1FOK|1|CSTRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNAX-RAY DIFFRACTION2.840B-form double helix,double helix,structureenzyme,hydrolase,nuclease
221PER|1|A+ 1PER|1|BTHE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITESX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
232OR1|1|A+ 2OR1|1|BRECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTIONX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
241RPE|1|A+ 1RPE|1|BTHE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
253CRO|1|A+ 3CRO|1|BTHE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
263BDN|1|DCrystal Structure of the Lambda RepressorX-RAY DIFFRACTION3.90919DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
271LLI|1|D+ 1LLI|1|ETHE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKINGX-RAY DIFFRACTION2.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
281LMB|1|1+ 1LMB|1|2REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEXX-RAY DIFFRACTION1.840B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
293BDN|1|CCrystal Structure of the Lambda RepressorX-RAY DIFFRACTION3.90919DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
303DFV|1|Y+ 3DFV|1|ZAdjacent GATA DNA bindingX-RAY DIFFRACTION3.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
312HAN|1|C+ 2HAN|1|DStructural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoterX-RAY DIFFRACTION1.9540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
321HLZ|1|C+ 1HLZ|1|DCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.840B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
331GA5|1|G+ 1GA5|1|HCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
341GA5|1|C+ 1GA5|1|DCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
351A6Y|1|C+ 1A6Y|1|DREVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEXX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
363DZU|1|C+ 3DZU|1|FIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 PeptideX-RAY DIFFRACTION3.240B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
373E00|1|C+ 3E00|1|FIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with GW9662, 9-cis Retinoic Acid and NCOA2 PeptideX-RAY DIFFRACTION3.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
383DZY|1|C+ 3DZY|1|FIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 PeptideX-RAY DIFFRACTION3.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
393C2I|1|B+ 3C2I|1|CThe Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNFX-RAY DIFFRACTION2.540B-form double helix,double helix,structurechromatin,structural
401YSA|1|A+ 1YSA|1|BTHE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEXX-RAY DIFFRACTION2.940DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
411FOS|1|A+ 1FOS|1|BTWO HUMAN C-FOS:C-JUN:DNA COMPLEXESX-RAY DIFFRACTION3.0540B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
421JNM|1|C+ 1JNM|1|DCrystal Structure of the Jun/CRE ComplexX-RAY DIFFRACTION2.240B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
431UBD|1|A+ 1UBD|1|BCO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENTX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
441B72|1|D+ 1B72|1|EPBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEXX-RAY DIFFRACTION2.3540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
451FOS|1|C+ 1FOS|1|DTWO HUMAN C-FOS:C-JUN:DNA COMPLEXESX-RAY DIFFRACTION3.0540B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
463COQ|1|D+ 3COQ|1|EStructural Basis for Dimerization in DNA Recognition by Gal4X-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
473DFX|1|X+ 3DFX|1|YOpposite GATA DNA bindingX-RAY DIFFRACTION2.740B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
482WTY|1|C+ 2WTY|1|DCrystal structure of the homodimeric MafB in complex with the T-MARE binding siteX-RAY DIFFRACTION2.939B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
492H8R|1|E+ 2H8R|1|FHepatocyte Nuclear Factor 1b bound to DNA: MODY5 Gene ProductX-RAY DIFFRACTION3.240double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
502VY2|1|WStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoterX-RAY DIFFRACTION2.320B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
512VY1|1|WStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoterX-RAY DIFFRACTION2.10420B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
522RAM|1|C+ 2RAM|1|DA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
531RAM|1|C+ 1RAM|1|DA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-RAY DIFFRACTION2.740double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
542R5Y|1|C+ 2R5Y|1|DStructure of Scr/Exd complex bound to a consensus Hox-Exd siteX-RAY DIFFRACTION2.640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
552R5Z|1|C+ 2R5Z|1|DStructure of Scr/Exd complex bound to a DNA sequence derived from the fkh geneX-RAY DIFFRACTION2.640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
561PUF|1|D+ 1PUF|1|ECrystal Structure of HoxA9 and Pbx1 homeodomains bound to DNAX-RAY DIFFRACTION1.940B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
571S9K|1|A+ 1S9K|1|BCrystal Structure of Human NFAT1 and Fos-Jun on the IL-2 ARRE1 SiteX-RAY DIFFRACTION3.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,immunoglobulin (Ig) fold,leucine zipper (bZIP),regulatory,rel homology,transcription
581A02|1|A+ 1A02|1|BSTRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNAX-RAY DIFFRACTION2.740B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,immunoglobulin (Ig) fold,leucine zipper (bZIP),regulatory,rel homology,transcription
592WIZ|1|C+ 2WIZ|1|DCrystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrateX-RAY DIFFRACTION3.340Holliday junction,structureenzyme,hydrolase,nuclease
603K5N|1|T+ 3K5N|1|PCrystal structure of E.coli Pol II-abasic DNA binary complexX-RAY DIFFRACTION3.1526double helix,structureenzyme,polymerase,transferase
612HAP|1|A+ 2HAP|1|BSTRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATIONX-RAY DIFFRACTION2.540double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
621QP9|1|E+ 1QP9|1|FSTRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7X-RAY DIFFRACTION2.840B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
631HWT|1|A+ 1HWT|1|BSTRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
641HWT|1|E+ 1HWT|1|FSTRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
651QP9|1|G+ 1QP9|1|HSTRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7X-RAY DIFFRACTION2.837B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
663MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|GCre recombinase-DNA transition stateX-RAY DIFFRACTION2.2970enzyme,recombinase
673MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|LCre recombinase-DNA transition stateX-RAY DIFFRACTION2.2970enzyme,recombinase
682PE5|1|D+ 2PE5|1|ECrystal Structure of the Lac Repressor bound to ONPG in repressed stateX-RAY DIFFRACTION3.534double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
692PE5|1|FCrystal Structure of the Lac Repressor bound to ONPG in repressed stateX-RAY DIFFRACTION3.517double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
702ZHG|1|BCrystal structure of SoxR in complex with DNAX-RAY DIFFRACTION2.820double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
713ECP|1|B+ 3ECP|1|CCrystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNAX-RAY DIFFRACTION2.540enzyme,hydrolase,nuclease,recombinase
721MUS|1|B+ 1MUS|1|Ccrystal structure of Tn5 transposase complexed with resolved outside end DNAX-RAY DIFFRACTION1.940enzyme,hydrolase,nuclease,recombinase
731MUH|1|B+ 1MUH|1|CCRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNAX-RAY DIFFRACTION2.340enzyme,hydrolase,nuclease,recombinase
741MM8|1|B+ 1MM8|1|CCrystal structure of Tn5 Transposase complexed with ME DNAX-RAY DIFFRACTION2.840enzyme,hydrolase,nuclease,recombinase
753KHL|1|E+ 3KHL|1|DDpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.130enzyme,polymerase,transferase
763KHL|1|J+ 3KHL|1|HDpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesionX-RAY DIFFRACTION2.131enzyme,polymerase,transferase
773K5M|1|T+ 3K5M|1|PCrystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complexX-RAY DIFFRACTION2.0433enzyme,polymerase,transferase
783GLG|1|K+ 3GLG|1|LCrystal Structure of a Mutant (gammaT157A) E. coli Clamp Loader Bound to Primer-Template DNAX-RAY DIFFRACTION3.2524enzyme,polymerase,transferase
793GLG|1|M+ 3GLG|1|NCrystal Structure of a Mutant (gammaT157A) E. coli Clamp Loader Bound to Primer-Template DNAX-RAY DIFFRACTION3.2524enzyme,polymerase,transferase
802C62|1|CCrystal Structure of the Human Transcription Cofactor PC4 in Complex with Single-Stranded DNAX-RAY DIFFRACTION1.7416regulatory,transcription
812FDC|1|DStructural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complexX-RAY DIFFRACTION3.35double helix,structureDNA replication/repair,enzyme,hydrolase,nuclease,regulatory
822FDC|1|CStructural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complexX-RAY DIFFRACTION3.312double helix,structureDNA replication/repair,enzyme,hydrolase,nuclease,regulatory
833DSC|1|BCrystal structure of P. furiosus Mre11 DNA synaptic complexX-RAY DIFFRACTION2.717DNA replication/repair,enzyme,hydrolase,nuclease,regulatory
846CRO|1|R+ 6CRO|1|UCRYSTAL STRUCTURE OF LAMBDA-CRO BOUND TO A CONSENSUS OPERATOR AT 3.0 ANGSTROM RESOLUTIONX-RAY DIFFRACTION340DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
851MSW|1|T+ 1MSW|1|RStructural basis for the transition from initiation to elongation transcription in T7 RNA polymeraseX-RAY DIFFRACTION2.130enzyme,polymerase,transferase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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