RNA 3D Hub //

Equivalence class DNA_4.0_86315.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13IV5|1|C+ 3IV5|1|D (rep)DNA (27-MER)Crystal structure of Fis bound to 27 bp optimal binding sequence F1X-ray diffraction2.92010-04-28
23JRE|1|C+ 3JRE|1|DDNA (27-MER)Crystal structure of Fis bound to 27 bp DNA F26 containing A-tract at centerX-ray diffraction3.172010-04-28
33JRH|1|C+ 3JRH|1|DDNA (27-MER)Crystal structure of Fis bound to 27 bp non consensus sequence DNA F21X-ray diffraction2.882010-04-28
43JRF|1|C+ 3JRF|1|DDNA (27-MER)Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at centerX-ray diffraction3.052010-04-28
53JR9|1|C+ 3JR9|1|DDNA (27-MER)Crystal structure of Fis bound to 27 bp optimal binding sequence F2X-ray diffraction2.92010-04-28
63JRI|1|C+ 3JRI|1|DDNA (27-MER)Crystal structure of Fis bound to 27 bp non consensus sequence DNA F23X-ray diffraction3.112010-04-28
73JRC|1|C+ 3JRC|1|DDNA (27-MER)Crystal structure of Fis bound to 27 bp DNA F29 containing 5 G/Cs at centerX-ray diffraction3.082010-04-28
83JRA|1|C+ 3JRA|1|DDNA (27-MER)Crystal structure of Fis bound to 27bp non consensus sequence DNA F6X-ray diffraction3.112010-04-28
93JRD|1|C+ 3JRD|1|DDNA (27-MER)Crystal structure of Fis bound to 27 bp DNA F25 containing T2A3 sequence at centerX-ray diffraction3.12010-04-28
103JRB|1|C+ 3JRB|1|DDNA (27-MER)Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at centerX-ray diffraction3.12010-04-28
113JRG|1|C+ 3JRG|1|DDNA (27-MER)Crystal structure of Fis bound to 27 bp non consensus sequence DNA F18X-ray diffraction3.112010-04-28

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLengthNAKB NA annotationNAKB protein annotation
13JRI|1|C+ 3JRI|1|DCrystal structure of Fis bound to 27 bp non consensus sequence DNA F23X-RAY DIFFRACTION3.1127B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
23JRG|1|C+ 3JRG|1|DCrystal structure of Fis bound to 27 bp non consensus sequence DNA F18X-RAY DIFFRACTION3.1127B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
33JR9|1|C+ 3JR9|1|DCrystal structure of Fis bound to 27 bp optimal binding sequence F2X-RAY DIFFRACTION2.927B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
43IV5|1|C+ 3IV5|1|DCrystal structure of Fis bound to 27 bp optimal binding sequence F1X-RAY DIFFRACTION2.927B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
53JRH|1|C+ 3JRH|1|DCrystal structure of Fis bound to 27 bp non consensus sequence DNA F21X-RAY DIFFRACTION2.8827B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
63JRB|1|C+ 3JRB|1|DCrystal structure of Fis bound to 27 bp DNA F24 containing T-tract at centerX-RAY DIFFRACTION3.127B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
73JRD|1|C+ 3JRD|1|DCrystal structure of Fis bound to 27 bp DNA F25 containing T2A3 sequence at centerX-RAY DIFFRACTION3.127B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
83JRF|1|C+ 3JRF|1|DCrystal structure of Fis bound to 27 bp DNA F27 containing a C/G at centerX-RAY DIFFRACTION3.0527B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
93JRE|1|C+ 3JRE|1|DCrystal structure of Fis bound to 27 bp DNA F26 containing A-tract at centerX-RAY DIFFRACTION3.1727B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
103JRC|1|C+ 3JRC|1|DCrystal structure of Fis bound to 27 bp DNA F29 containing 5 G/Cs at centerX-RAY DIFFRACTION3.0827B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
113JRA|1|C+ 3JRA|1|DCrystal structure of Fis bound to 27bp non consensus sequence DNA F6X-RAY DIFFRACTION3.1127B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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