Equivalence class DNA_4.0_95960.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2FMP|1|T+ 2FMP|1|P+ 2FMP|1|D (rep) | 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | DNA Polymerase beta with a terminated gapped DNA substrate and ddCTP with sodium in the catalytic site | X-ray diffraction | 1.65 | 31 | 2006-04-25 | ||||
| 2 | 3LAP|1|K+ 3LAP|1|L | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-ray diffraction | 2.15 | 32 | 2010-05-05 | ||||
| 3 | 3LAP|1|I+ 3LAP|1|J | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-ray diffraction | 2.15 | 32 | 2010-05-05 | ||||
| 4 | 3LAP|1|G+ 3LAP|1|H | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-ray diffraction | 2.15 | 32 | 2010-05-05 | ||||
| 5 | 3LAJ|1|K+ 3LAJ|1|L | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-ray diffraction | 2.306 | 32 | 2010-05-05 | ||||
| 6 | 3LAJ|1|G+ 3LAJ|1|H | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-ray diffraction | 2.306 | 32 | 2010-05-05 | ||||
| 7 | 3LAJ|1|I+ 3LAJ|1|J | 5'-D(*TP*TP*GP*CP*AP*TP*AP*AP*CP*GP*AP*TP*GP*CP*AP*A)-3', 5'-D(*TP*TP*GP*CP*AP*TP*CP*GP*TP*TP*AP*TP*GP*CP*AP*A)-3' | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-ray diffraction | 2.306 | 32 | 2010-05-05 | ||||
| 8 | 2VE9|1|I+ 2VE9|1|J | 5'-D(*AP*CP*CP*AP*GP*GP*GP*CP*AP*GP *GP*GP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*CP*CP*CP*TP*GP*CP *CP*CP*TP*GP*GP*T)-3' | Pseudomonas aeruginosa | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-ray diffraction | 1.9 | 30 | 2008-09-09 | |||
| 9 | 1TV9|1|T+ 1TV9|1|P+ 1TV9|1|D | 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE ADENINE AND INCOMING CYTIDINE | X-ray diffraction | 2 | 32 | 2004-11-23 | ||||
| 10 | 3ISC|1|T+ 3ISC|1|P+ 3ISC|1|D | 5'-D(*CP*CP*GP*AP*CP*(3DR)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | synthetic construct | Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA | X-ray diffraction | 2 | 31 | 2009-09-15 | |||
| 11 | 2VE9|1|K+ 2VE9|1|L | 5'-D(*AP*CP*CP*AP*GP*GP*GP*CP*AP*GP *GP*GP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*CP*CP*CP*TP*GP*CP *CP*CP*TP*GP*GP*T)-3' | Pseudomonas aeruginosa | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-ray diffraction | 1.9 | 30 | 2008-09-09 | |||
| 12 | 3BS1|1|B+ 3BS1|1|C | DNA (5'-D(*DAP*DAP*(BRU)P*DAP*DCP*DTP*DTP*DAP*DAP*DCP*DTP*DGP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DTP*DAP*DAP*DCP*DAP*DGP*DTP*DTP*DAP*DAP*DGP*(BRU)P*DAP*DT)-3') | Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with a Novel Mode of Binding | X-ray diffraction | 1.6 | 32 | 2008-04-08 | ||||
| 13 | 3OHB|1|T+ 3OHB|1|P | 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(*TP*AP*AP*TP*GP*(8OG)P*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3' | Yeast DNA polymerase eta extending from an 8-oxoG lesion | X-ray diffraction | 2 | 24 | 2010-12-22 | ||||
| 14 | 3M8R|1|C+ 3M8R|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-ethylated dTTP | X-ray diffraction | 2 | 28 | 2010-07-07 | ||||
| 15 | 2FMS|1|T+ 2FMS|1|P+ 2FMS|1|D | 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | DNA Polymerase beta with a gapped DNA substrate and dUMPNPP with magnesium in the catalytic site | X-ray diffraction | 2 | 31 | 2006-04-25 | ||||
| 16 | 2AQ4|1|T+ 2AQ4|1|P | 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*C)-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3' | Ternary complex of the catalytic core of REV1 with DNA and dCTP. | X-ray diffraction | 2.32 | 28 | 2005-10-04 | ||||
| 17 | 3ISD|1|T+ 3ISD|1|P+ 3ISD|1|D | 5'-D(*CP*CP*GP*AP*CP*(3DR)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | synthetic construct | Ternary complex of human DNA polymerase beta with an abasic site (THF): DAPCPP mismatch | X-ray diffraction | 2.6 | 31 | 2009-09-15 | |||
| 18 | 2WT7|1|C+ 2WT7|1|D | MODIFIED T-MARE MOTIF | synthetic construct | Crystal structure of the bZIP heterodimeric complex MafB:cFos bound to DNA | X-ray diffraction | 2.3 | 32 | 2010-09-29 | |||
| 19 | 1ZJM|1|T+ 1ZJM|1|P+ 1ZJM|1|D | 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', 5'-D(P*GP*TP*CP*GP*G)-3', d(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus | X-ray diffraction | 2.1 | 31 | 2005-08-16 | ||||
| 20 | 2E42|1|C+ 2E42|1|D | DNA (5'-D(P*DAP*DAP*DTP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DCP*DCP*DT)-3'), DNA (5'-D(P*DTP*DAP*DGP*DGP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DT)-3') | Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment | X-ray diffraction | 1.8 | 32 | 2007-12-18 | ||||
| 21 | 1N48|1|C+ 1N48|1|B | 5'-D(*CP*AP*(3DR)P*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3' | Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion | X-ray diffraction | 2.2 | 29 | 2004-02-24 | ||||
| 22 | 3JPQ|1|T+ 3JPQ|1|P+ 3JPQ|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monoBromo methylene triphosphate | X-ray diffraction | 1.9 | 31 | 2010-06-02 | ||||
| 23 | 3M8S|1|C+ 3M8S|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-methylated dTTP | X-ray diffraction | 2.2 | 28 | 2010-07-07 | ||||
| 24 | 2FMQ|1|B+ 2FMQ|1|C+ 2FMQ|1|D | 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Sodium in active site of DNA Polymerase Beta | X-ray diffraction | 2.2 | 31 | 2006-04-25 | ||||
| 25 | 3LWL|1|C+ 3LWL|1|B | DNA (5'-D(*AP*AP*AP*(3DR)P*TP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(2DA))-3') | Structure of Klenow fragment of Taq polymerase in complex with an abasic site | X-ray diffraction | 2.25 | 26 | 2010-05-05 | ||||
| 26 | 3JPO|1|T+ 3JPO|1|P+ 3JPO|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate | X-ray diffraction | 2 | 31 | 2010-06-02 | ||||
| 27 | 3IAY|1|T+ 3IAY|1|P | 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3' | Ternary complex of DNA polymerase delta | X-ray diffraction | 2 | 28 | 2009-09-22 | ||||
| 28 | 3JPS|1|T+ 3JPS|1|P+ 3JPS|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro methyl methylene triphosphate | X-ray diffraction | 2 | 31 | 2010-06-02 | ||||
| 29 | 3MBY|1|T+ 3MBY|1|P+ 3MBY|1|D | DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3') | Ternary complex of DNA Polymerase BETA with template base A and 8oxodGTP in the active site with a dideoxy terminated primer | X-ray diffraction | 2 | 31 | 2010-06-09 | ||||
| 30 | 2C6Y|1|C+ 2C6Y|1|D | INTERLEUKIN 2 PROMOTOR | Homo sapiens | Crystal structure of interleukin enhancer-binding factor 1 bound to DNA | X-ray diffraction | 2.4 | 32 | 2006-04-18 | |||
| 31 | 3JPN|1|T+ 3JPN|1|P+ 3JPN|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dichloro methylene triphosphate | X-ray diffraction | 2.15 | 31 | 2010-06-02 | ||||
| 32 | 3JTG|1|B+ 3JTG|1|C | DNA (5'-D(*CP*AP*AP*AP*CP*AP*GP*GP*AP*AP*AP*CP*TP*CP*CP*T)-3'), DNA (5'-D(*GP*AP*GP*GP*AP*GP*TP*TP*TP*CP*CP*TP*GP*TP*TP*T)-3') | Crystal structure of mouse Elf3 C-terminal DNA-binding domain in complex with type II TGF-beta receptor promoter DNA | X-ray diffraction | 2.2 | 32 | 2010-01-12 | ||||
| 33 | 1ZJN|1|T+ 1ZJN|1|P+ 1ZJN|1|D | 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', 5'-D(P*GP*TP*CP*GP*G)-3', d(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' | Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus with dGTP | X-ray diffraction | 2.61 | 31 | 2005-08-16 | ||||
| 34 | 1L3V|1|C+ 1L3V|1|B | 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*AP*CP*GP*TP*C)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 15 base pairs of duplex DNA following addition of dTTP, dATP, dCTP, and dGTP residues. | X-ray diffraction | 1.71 | 31 | 2003-03-25 | ||||
| 35 | 3JPR|1|T+ 3JPR|1|P+ 3JPR|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dimethyl methylene triphosphate | X-ray diffraction | 2.1 | 31 | 2010-06-02 | ||||
| 36 | 3CO6|1|A+ 3CO6|1|B | DNA (5'-D(*DCP*DAP*DAP*DGP*DGP*DTP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DCP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DGP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DAP*DCP*DCP*DTP*DTP*DG)-3') | Crystal Structure of FoxO1 DBD Bound to DBE1 DNA | X-ray diffraction | 2.1 | 32 | 2008-09-16 | ||||
| 37 | 3ISB|1|T+ 3ISB|1|P+ 3ISB|1|D | 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Binary complex of human DNA polymerase beta with a gapped DNA | X-ray diffraction | 2 | 31 | 2009-09-15 | ||||
| 38 | 1NH2|1|E+ 1NH2|1|F | 5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3', 5'-D(*TP*GP*TP*AP*(5IU)P*GP*TP*AP*TP*AP*(5IU)P*AP*AP*AP*AP*C)-3' | Crystal structure of a yeast TFIIA/TBP/DNA complex | X-ray diffraction | 1.9 | 32 | 2003-10-21 | ||||
| 39 | 2E43|1|C+ 2E43|1|D | DNA (5'-D(P*DAP*DAP*DTP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DCP*DCP*DT)-3'), DNA (5'-D(P*DTP*DAP*DGP*DGP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DT)-3') | Crystal structure of C/EBPbeta Bzip homodimer K269A mutant bound to A High Affinity DNA fragment | X-ray diffraction | 2.1 | 32 | 2007-12-18 | ||||
| 40 | 3JPT|1|T+ 3JPT|1|P+ 3JPT|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro chloro methylene triphosphate | X-ray diffraction | 2.15 | 31 | 2010-06-02 | ||||
| 41 | 2EWJ|1|B+ 2EWJ|1|C | 5'-D(*T*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3', 5'-D(*TP*G*AP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3' | Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- Locked form | X-ray diffraction | 2.7 | 29 | 2006-05-03 | ||||
| 42 | 3JPP|1|T+ 3JPP|1|P+ 3JPP|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-MonoMethyl Methylene triphosphate | X-ray diffraction | 2.1 | 31 | 2010-06-02 | ||||
| 43 | 3GDX|1|T+ 3GDX|1|P+ 3GDX|1|D | 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Dna polymerase beta with a gapped DND substrate and dTMP(CF2)PP | X-ray diffraction | 2.2 | 31 | 2009-05-05 | ||||
| 44 | 1TVA|1|T+ 1TVA|1|P+ 1TVA|1|D | 5'-D(*CP*CP*GP*AP*CP*TP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE THYMIDINE AND INCOMING CYTIDINE | X-ray diffraction | 2.6 | 32 | 2004-11-23 | ||||
| 45 | 1LQ1|1|E+ 1LQ1|1|F | 5'-D(*AP*CP*AP*AP*AP*AP*TP*TP*CP*GP*AP*CP*AP*CP*GP*A)-3', 5'-D(*TP*TP*CP*GP*TP*GP*TP*CP*GP*AP*AP*TP*TP*TP*TP*G)-3' | DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria | X-ray diffraction | 2.3 | 32 | 2002-08-23 | ||||
| 46 | 3COA|1|A+ 3COA|1|B | DNA (5'-D(*DCP*DAP*DAP*DGP*DCP*DAP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DCP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DGP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DG)-3') | Crystal Structure of FoxO1 DBD Bound to IRE DNA | X-ray diffraction | 2.2 | 32 | 2008-09-16 | ||||
| 47 | 1L3S|1|C+ 1L3S|1|B | 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*G)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment complexed to 9 base pairs of duplex DNA. | X-ray diffraction | 1.7 | 23 | 2003-03-25 | ||||
| 48 | 3COA|1|D+ 3COA|1|E | DNA (5'-D(*DCP*DAP*DAP*DGP*DCP*DAP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DCP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DGP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DG)-3') | Crystal Structure of FoxO1 DBD Bound to IRE DNA | X-ray diffraction | 2.2 | 32 | 2008-09-16 | ||||
| 49 | 3C2M|1|T+ 3C2M|1|P+ 3C2M|1|D | DNA (5'-D(*DCP*DCP*DGP*DAP*DCP*DGP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DGP*DAP*DTP*DGP*DCP*DGP*DC)-3'), DNA (5'-D(P*DGP*DTP*DCP*DGP*DG)-3') | Ternary complex of DNA POLYMERASE BETA with a G:dAPCPP mismatch in the active site | X-ray diffraction | 2.15 | 31 | 2008-05-20 | ||||
| 50 | 2PXI|1|T+ 2PXI|1|P+ 2PXI|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monofluoromethylene triphosphate | X-ray diffraction | 2.1 | 31 | 2008-01-08 | ||||
| 51 | 3C2K|1|T+ 3C2K|1|P+ 3C2K|1|D | DNA (5'-D(*DCP*DCP*DGP*DAP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DGP*DAP*DTP*DGP*DCP*DGP*DC)-3'), DNA (5'-D(P*DGP*DTP*DCP*DGP*DG)-3') | DNA POLYMERASE BETA with a gapped DNA substrate and DUMPNPP with Manganese in the active site | X-ray diffraction | 2.4 | 31 | 2008-05-20 | ||||
| 52 | 1LQ1|1|G+ 1LQ1|1|H | 5'-D(*AP*CP*AP*AP*AP*AP*TP*TP*CP*GP*AP*CP*AP*CP*GP*A)-3', 5'-D(*TP*TP*CP*GP*TP*GP*TP*CP*GP*AP*AP*TP*TP*TP*TP*G)-3' | DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria | X-ray diffraction | 2.3 | 32 | 2002-08-23 | ||||
| 53 | 1L3U|1|C+ 1L3U|1|B | 5'-D(*GP*AP*C*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 11 base pairs of duplex DNA following addition of a dTTP and a dATP residue. | X-ray diffraction | 1.8 | 24 | 2003-03-25 | ||||
| 54 | 1S0M|1|F+ 1S0M|1|E | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*T)-3', 5'-D(P*AP*TP*AP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*CP*A)-3' | Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase | X-ray diffraction | 2.7 | 29 | 2004-03-30 | ||||
| 55 | 1S0M|1|D+ 1S0M|1|C | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*T)-3', 5'-D(P*AP*TP*AP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*CP*A)-3' | Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase | X-ray diffraction | 2.7 | 29 | 2004-03-30 | ||||
| 56 | 3N7B|1|C+ 3N7B|1|D | DNA (5'-D(*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*GP*GP*GP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*CP*CP*CP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)-3') | SgrAI bound to secondary site DNA and Ca(II) | X-ray diffraction | 2.65 | 32 | 2010-11-24 | ||||
| 57 | 3GQC|1|L+ 3GQC|1|K | 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3' | Structure of human Rev1-DNA-dNTP ternary complex | X-ray diffraction | 2.5 | 28 | 2009-05-19 | ||||
| 58 | 3GQC|1|F+ 3GQC|1|E | 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3' | Structure of human Rev1-DNA-dNTP ternary complex | X-ray diffraction | 2.5 | 28 | 2009-05-19 | ||||
| 59 | 3GQC|1|J+ 3GQC|1|I | 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3' | Structure of human Rev1-DNA-dNTP ternary complex | X-ray diffraction | 2.5 | 28 | 2009-05-19 | ||||
| 60 | 3LK9|1|T+ 3LK9|1|P+ 3LK9|1|D | DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3') | DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P | X-ray diffraction | 2.5 | 31 | 2011-01-12 | ||||
| 61 | 1JXL|1|T+ 1JXL|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3', 5'-D(*T*TP*CP*GP*AP*AP*(BRU)P*CP*CP*TP*(BRU)P*CP*CP*CP*CP*C)-3' | Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide | X-ray diffraction | 2.1 | 27 | 2001-10-05 | ||||
| 62 | 3MFH|1|T+ 3MFH|1|P | 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(*TP*AP*AP*TP*TP*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3' | DNA Polymerase Eta in Complex With Undamaged DNA | X-ray diffraction | 2 | 24 | 2010-06-23 | ||||
| 63 | 3OA6|1|E+ 3OA6|1|F | DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*AP*G)-3'), DNA (5'-D(*GP*CP*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3') | Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide | X-ray diffraction | 2.35 | 32 | 2010-08-18 | ||||
| 64 | 3BJY|1|T+ 3BJY|1|P | DNA (5'-D(*DAP*DTP*DCP*DCP*DTP*DCP*DCP*DCP*DCP*DTP*DAP*(DOC))-3'), DNA (5'-D(*DTP*DAP*DAP*(P)P*DGP*DTP*DAP*DGP*DGP*DGP*DGP*DAP*DGP*DGP*DAP*DT)-3') | Catalytic core of Rev1 in complex with DNA (modified template guanine) and incoming nucleotide | X-ray diffraction | 2.41 | 28 | 2008-10-28 | ||||
| 65 | 1L3T|1|C+ 1L3T|1|B | 5'-D(*GP*AP*CP*G*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 10 base pairs of duplex DNA following addition of a single dTTP residue | X-ray diffraction | 1.7 | 22 | 2003-03-25 | ||||
| 66 | 3F27|1|A+ 3F27|1|B | DNA (5'-D(*DCP*DCP*DAP*DGP*DGP*DAP*DCP*DAP*DAP*DTP*DAP*DGP*DAP*DGP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DCP*DTP*DCP*DTP*DAP*DTP*DTP*DGP*DTP*DCP*DCP*DTP*DGP*DG)-3') | synthetic construct | Structure of Sox17 Bound to DNA | X-ray diffraction | 2.75 | 32 | 2009-04-07 | |||
| 67 | 2RDJ|1|D+ 2RDJ|1|C | DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3'), DNA (5'-D(P*DTP*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3') | Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms | X-ray diffraction | 2.2 | 30 | 2008-06-24 | ||||
| 68 | 3GQC|1|H+ 3GQC|1|G | 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3' | Structure of human Rev1-DNA-dNTP ternary complex | X-ray diffraction | 2.5 | 28 | 2009-05-19 | ||||
| 69 | 2F5P|1|C+ 2F5P|1|D | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*AP*GP*TP*CP*TP*AP*CP*C)-3' | synthetic construct | MutM crosslinked to undamaged DNA sampling A:T base pair IC2 | X-ray diffraction | 2 | 25 | 2006-03-07 | |||
| 70 | 3ERE|1|A+ 3ERE|1|B | 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DAP*DAP*DCP*DGP*DAP*DTP*DGP*DCP*DAP*DA)-3', 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DCP*DGP*DTP*DTP*DAP*DTP*DGP*DCP*DAP*DA)-3' | Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator | X-ray diffraction | 2.5 | 32 | 2008-10-14 | ||||
| 71 | 3N78|1|C+ 3N78|1|D | DNA (5'-D(*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*GP*GP*GP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*CP*CP*CP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)-3') | SgrAI bound to Secondary Site DNA and Mg(II) | X-ray diffraction | 2.95 | 32 | 2010-11-24 | ||||
| 72 | 3OQM|1|B+ 3OQM|1|E | 5'-D(*TP*TP*GP*AP*TP*AP*AP*CP*GP*CP*TP*TP*AP*CP*AP*A)-3', 5'-D(*TP*TP*GP*TP*AP*AP*GP*CP*GP*TP*TP*AP*TP*CP*AP*A)-3' | Bacillus subtilis | structure of ccpa-hpr-ser46p-ackA2 complex | X-ray diffraction | 2.96 | 32 | 2010-12-08 | |||
| 73 | 2QNF|1|C+ 2QNF|1|D | DNA (5'-D(*DCP*DAP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DGP*DAP*DGP*DCP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DCP*DTP*DCP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DTP*DG)-3') | Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches | X-ray diffraction | 3 | 32 | 2008-01-29 | ||||
| 74 | 2AYB|1|C+ 2AYB|1|D | 5'-D(*CP*AP*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*TP*TP*G)-3' | Crystal structure of HPV6a E2 DNA Binding Domain bound to a 16 base pair DNA target | X-ray diffraction | 3.2 | 32 | 2006-08-22 | ||||
| 75 | 3C2L|1|T+ 3C2L|1|P+ 3C2L|1|D | DNA (5'-D(*DCP*DCP*DGP*DAP*DCP*DCP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DGP*DAP*DTP*DGP*DCP*DGP*DC)-3'), DNA (5'-D(P*DGP*DTP*DCP*DGP*DG)-3') | Ternary complex of DNA POLYMERASE BETA with a C:DAPCPP mismatch in the active site | X-ray diffraction | 2.6 | 31 | 2008-05-20 | ||||
| 76 | 2HHU|1|C+ 2HHU|1|B | 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*CP*C)-3', 5'-D(*GP*TP*AP*CP*(6OG)P*GP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3' | C:O6-methyl-guanine in the polymerase postinsertion site (-1 basepair position) | X-ray diffraction | 1.8 | 24 | 2006-12-12 | ||||
| 77 | 1L5U|1|C+ 1L5U|1|B | 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*AP*C)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 12 base pairs of duplex DNA following addition of a dTTP, a dATP, and a dCTP residue. | X-ray diffraction | 1.95 | 26 | 2003-03-25 | ||||
| 78 | 3OA6|1|C+ 3OA6|1|D | DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*AP*G)-3'), DNA (5'-D(*GP*CP*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3') | Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide | X-ray diffraction | 2.35 | 32 | 2010-08-18 | ||||
| 79 | 1NJY|1|C+ 1NJY|1|B | DNA PRIMER STRAND, DNA TEMPLATE STRAND | THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 2 | 24 | 2004-03-30 | ||||
| 80 | 2I06|1|B+ 2I06|1|C | 5'-D(*T*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3', 5'-D(*TP*G*AP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3' | Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- Locked form | X-ray diffraction | 2.2 | 29 | 2007-08-21 | ||||
| 81 | 1CIT|1|B+ 1CIT|1|C | DNA (5'-D(*CP*CP*GP*AP*AP*AP*AP*GP*GP*TP*CP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*TP*GP*AP*CP*CP*TP*TP*TP*TP*CP*GP*G)-3') | DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B | X-ray diffraction | 2.7 | 32 | 1999-05-03 | ||||
| 82 | 2F5O|1|B+ 2F5O|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*GP*GP*AP*TP*CP*TP*AP*CP*C)-3' | MutM crosslinked to undamaged DNA sampling G:C base pair IC3 | X-ray diffraction | 2.05 | 27 | 2006-03-07 | ||||
| 83 | 2QNF|1|E+ 2QNF|1|F | DNA (5'-D(*DCP*DAP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DGP*DAP*DGP*DCP*DGP*DC)-3'), DNA (5'-D(*DCP*DGP*DGP*DCP*DTP*DCP*DCP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DTP*DG)-3') | Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches | X-ray diffraction | 3 | 32 | 2008-01-29 | ||||
| 84 | 1YFH|1|F+ 1YFH|1|G | 5'-D(*CP*CP*TP*AP*CP*AP*CP*AP*CP*AP*TP*CP*CP*AP*CP*A)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*(XCY)P*GP*TP*GP*TP*AP*GP*GP*T)-3' | wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine | X-ray diffraction | 3.01 | 32 | 2005-12-13 | ||||
| 85 | 1RYR|1|C+ 1RYR|1|B | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-ray diffraction | 2.28 | 29 | 2004-02-10 | ||||
| 86 | 1NKE|1|C+ 1NKE|1|B | DNA PRIMER STRAND, DNA TEMPLATE STRAND | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. | X-ray diffraction | 1.8 | 23 | 2004-03-30 | ||||
| 87 | 1NK5|1|C+ 1NK5|1|B | DNA PRIMER STRAND, DNA TEMPLATE STRAND | ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 2.1 | 28 | 2004-03-30 | ||||
| 88 | 2GEQ|1|C+ 2GEQ|1|D | 5'-D(*GP*CP*GP*TP*GP*AP*GP*CP*AP*TP*GP*CP*TP*CP*AP*C)-3' | Crystal Structure of a p53 Core Dimer Bound to DNA | X-ray diffraction | 2.3 | 28 | 2006-05-23 | ||||
| 89 | 1NK4|1|C+ 1NK4|1|B | DNA PRIMER STRAND, DNA TEMPLATE STRAND | GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 1.6 | 19 | 2004-03-30 | ||||
| 90 | 3MFK|1|C+ 3MFK|1|D | stromelysin-1 promoter DNA | Ets1 complex with stromelysin-1 promoter DNA | X-ray diffraction | 3 | 32 | 2010-08-18 | ||||
| 91 | 2QL2|1|E+ 2QL2|1|F | DNA (5'-D(*DAP*DGP*DGP*DAP*DCP*DCP*DAP*DGP*DAP*DTP*DGP*DGP*DCP*DCP*DTP*DA)-3'), DNA (5'-D(*DTP*DAP*DGP*DGP*DCP*DCP*DAP*DTP*DCP*DTP*DGP*DGP*DTP*DCP*DCP*DT)-3') | Crystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1 bound to DNA | X-ray diffraction | 2.5 | 32 | 2008-11-04 | ||||
| 92 | 2HHT|1|C+ 2HHT|1|B | 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*TP*CP*G)-3', 5'-D(*GP*TP*AP*CP*(6OG)P*AP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3' | C:O6-methyl-guanine pair in the polymerase-2 basepair position | X-ray diffraction | 2.05 | 26 | 2006-12-12 | ||||
| 93 | 2HHV|1|C+ 2HHV|1|B | 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*TP*TP*G)-3', 5'-D(*GP*TP*AP*CP*(6OG)P*AP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3' | T:O6-methyl-guanine in the polymerase-2 basepair position | X-ray diffraction | 1.55 | 27 | 2006-12-12 | ||||
| 94 | 2HW3|1|C+ 2HW3|1|B | 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*TP*T)-3', 5'-D(*GP*TP*A*CP*(6OG)P*AP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3' | T:O6-methyl-guanine pair in the polymerase postinsertion site (-1 basepair position) | X-ray diffraction | 1.98 | 24 | 2006-12-12 | ||||
| 95 | 2QL2|1|G+ 2QL2|1|H | DNA (5'-D(*DAP*DGP*DGP*DAP*DCP*DCP*DAP*DGP*DAP*DTP*DGP*DGP*DCP*DCP*DTP*DA)-3'), DNA (5'-D(*DTP*DAP*DGP*DGP*DCP*DCP*DAP*DTP*DCP*DTP*DGP*DGP*DTP*DCP*DCP*DT)-3') | Crystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1 bound to DNA | X-ray diffraction | 2.5 | 32 | 2008-11-04 | ||||
| 96 | 3EI2|1|G+ 3EI2|1|H | 5'-D(*DAP*DAP*DAP*DTP*DGP*DAP*DAP*DTP*(3DR)P*DAP*DAP*DGP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DCP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DTP*DT)-3' | Structure of hsDDB1-drDDB2 bound to a 16 bp abasic site containing DNA-duplex | X-ray diffraction | 2.6 | 30 | 2009-01-20 | ||||
| 97 | 1RZR|1|B+ 1RZR|1|E | 5'-D(*CP*TP*GP*AP*AP*AP*GP*CP*GP*CP*TP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*TP*AP*GP*CP*GP*CP*TP*TP*TP*CP*AP*G)-3' | crystal structure of transcriptional regulator-phosphoprotein-DNA complex | X-ray diffraction | 2.8 | 32 | 2004-10-12 | ||||
| 98 | 3OQN|1|B+ 3OQN|1|E | 5'-D(*AP*TP*GP*GP*TP*AP*CP*CP*GP*CP*TP*TP*TP*CP*AP*A)-3', 5'-D(*TP*TP*GP*AP*AP*AP*GP*CP*GP*GP*TP*AP*CP*CP*AP*T)-3' | Bacillus subtilis | Structure of ccpa-hpr-ser46-p-gntr-down cre | X-ray diffraction | 3.3 | 32 | 2010-12-08 | |||
| 99 | 2WTU|1|E+ 2WTU|1|F | DNA | synthetic construct | Crystal structure of Escherichia coli MutS in complex with a 16 basepair oligo containing an A.A mismatch. | X-ray diffraction | 3.4 | 32 | 2010-02-09 | |||
| 100 | 2F5N|1|B+ 2F5N|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3' | MutM crosslinked to undamaged DNA sampling A:T base pair IC1 | X-ray diffraction | 2 | 27 | 2006-03-07 | ||||
| 101 | 1N4L|1|B+ 1N4L|1|D | 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*TP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | A DNA analogue of the polypurine tract of HIV-1 | X-ray diffraction | 2 | 32 | 2003-06-24 | ||||
| 102 | 2I05|1|B+ 2I05|1|C | 5'-D(*T*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3', 5'-D(*TP*AP*GP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3' | Escherichia Coli Replication Terminator Protein (Tus) Complexed With TerA DNA | X-ray diffraction | 2.6 | 30 | 2007-08-21 | ||||
| 103 | 2IVK|1|I+ 2IVK|1|J | 5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*TP*C)-3' | synthetic construct | Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA | X-ray diffraction | 2.9 | 32 | 2007-01-02 | |||
| 104 | 1L1T|1|B+ 1L1T|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg) Bound to Abasic-Site Containing DNA | X-ray diffraction | 1.8 | 23 | 2002-06-14 | ||||
| 105 | 1NJZ|1|C+ 1NJZ|1|B | DNA PRIMER STRAND, DNA TEMPLATE STRAND | CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 2 | 21 | 2004-03-30 | ||||
| 106 | 1YFH|1|D+ 1YFH|1|E | 5'-D(*CP*CP*TP*AP*CP*AP*CP*AP*CP*AP*TP*CP*CP*AP*CP*A)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*(XCY)P*GP*TP*GP*TP*AP*GP*GP*T)-3' | wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine | X-ray diffraction | 3.01 | 32 | 2005-12-13 | ||||
| 107 | 2F5S|1|B+ 2F5S|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3' | Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC1 | X-ray diffraction | 2.35 | 23 | 2006-03-07 | ||||
| 108 | 2NOB|1|B+ 2NOB|1|C | 5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*T*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3' | Structure of catalytically inactive H270A human 8-oxoguanine glycosylase crosslinked to 8-oxoguanine DNA | X-ray diffraction | 2.1 | 27 | 2006-11-21 | ||||
| 109 | 1L1Z|1|B+ 1L1Z|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg) Covalent-DNA Intermediate | X-ray diffraction | 1.7 | 23 | 2002-06-14 | ||||
| 110 | 2FVS|1|B | 5'-D(*CP*AP*CP*AP*AP*TP*GP*AP*TP*CP*AP*TP*TP*GP*TP*G)-3' | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-ray diffraction | 2.35 | 16 | 2006-12-12 | ||||
| 111 | 1RZR|1|H+ 1RZR|1|R | 5'-D(*CP*TP*GP*AP*AP*AP*GP*CP*GP*CP*TP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*TP*AP*GP*CP*GP*CP*TP*TP*TP*CP*AP*G)-3' | crystal structure of transcriptional regulator-phosphoprotein-DNA complex | X-ray diffraction | 2.8 | 32 | 2004-10-12 | ||||
| 112 | 2FVR|1|B | 5'-D(*TP*CP*TP*TP*TP*CP*AP*TP*AP*TP*GP*AP*AP*AP*GP*A)-3' | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-ray diffraction | 2.2 | 16 | 2006-12-12 | ||||
| 113 | 2FVQ|1|B | 5'-D(*CP*TP*TP*TP*CP*AP*TP*TP*AP*AP*TP*GP*AP*AP*AP*G)-3' | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-ray diffraction | 2.3 | 16 | 2006-12-12 | ||||
| 114 | 2NTZ|1|W+ 2NTZ|1|Y | 5'-D(*CP*GP*TP*GP*AP*AP*AP*TP*CP*GP*CP*CP*AP*CP*GP*A)-3', 5'-D(*TP*CP*GP*TP*GP*GP*CP*GP*AP*TP*TP*TP*CP*AP*CP*G)-3' | Structure of a ParB-DNA complex reveals a double B-box interaction | X-ray diffraction | 3.35 | 32 | 2007-02-20 | ||||
| 115 | 1XSD|1|B | 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3' | Crystal structure of the BlaI repressor in complex with DNA | X-ray diffraction | 2.7 | 16 | 2005-03-29 | ||||
| 116 | 2FVP|1|B | 5'-D(*TP*TP*TP*CP*AP*TP*TP*GP*CP*AP*AP*TP*GP*AP*AP*A)-3' | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-ray diffraction | 2.25 | 16 | 2006-12-12 | ||||
| 117 | 1L2B|1|B+ 1L2B|1|C+ 1L2B|1|D | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*C*(AD2))-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg) DNA End-Product Structure | X-ray diffraction | 2.4 | 23 | 2002-06-14 | ||||
| 118 | 1ZVV|1|O | DNA recognition strand CRE | synthetic construct | Crystal structure of a ccpa-crh-dna complex | X-ray diffraction | 2.98 | 16 | 2006-02-07 | |||
| 119 | 2F5Q|1|B+ 2F5Q|1|C | 5'-D(*AP*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3' | Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2 | X-ray diffraction | 2.35 | 20 | 2006-03-07 | ||||
| 120 | 2NTZ|1|E+ 2NTZ|1|U | 5'-D(*CP*GP*TP*GP*AP*AP*AP*TP*CP*GP*CP*CP*AP*CP*GP*A)-3', 5'-D(*TP*CP*GP*TP*GP*GP*CP*GP*AP*TP*TP*TP*CP*AP*CP*G)-3' | Structure of a ParB-DNA complex reveals a double B-box interaction | X-ray diffraction | 3.35 | 32 | 2007-02-20 | ||||
| 121 | 1L2D|1|B+ 1L2D|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex | X-ray diffraction | 2 | 23 | 2002-06-14 | ||||
| 122 | 1ZVV|1|R+ 1ZVV|1|T | DNA recognition strand CRE | synthetic construct | Crystal structure of a ccpa-crh-dna complex | X-ray diffraction | 2.98 | 16 | 2006-02-07 | |||
| 123 | 1L2C|1|B+ 1L2C|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex | X-ray diffraction | 2.2 | 23 | 2002-06-14 | ||||
| 124 | 2D45|1|E+ 2D45|1|F | 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3' | Crystal structure of the MecI-mecA repressor-operator complex | X-ray diffraction | 3.8 | 32 | 2005-10-25 | ||||
| 125 | 2D45|1|G+ 2D45|1|H | 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3' | Crystal structure of the MecI-mecA repressor-operator complex | X-ray diffraction | 3.8 | 25 | 2005-10-25 | ||||
| 126 | 3G9M|1|C+ 3G9M|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA-binding domain:Sgk 16bp complex-44 | X-ray diffraction | 1.61 | 32 | 2009-04-21 | ||||
| 127 | 3G9O|1|C+ 3G9O|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA-binding domain:Sgk 16bp complex-9 | X-ray diffraction | 1.65 | 32 | 2009-04-21 | ||||
| 128 | 3G9P|1|C+ 3G9P|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:Sgk 16bp complex-7 | X-ray diffraction | 1.652 | 32 | 2009-04-14 | ||||
| 129 | 1GTW|1|C+ 1GTW|1|D | 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3' | crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter | X-ray diffraction | 1.85 | 32 | 2004-02-06 | ||||
| 130 | 3G9I|1|D+ 3G9I|1|C | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA Binding domain: Pal complex-35 | X-ray diffraction | 1.85 | 32 | 2009-04-21 | ||||
| 131 | 1GU4|1|C+ 1GU4|1|D | 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3' | synthetic construct | Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment | X-ray diffraction | 1.8 | 32 | 2003-06-26 | |||
| 132 | 3G99|1|C+ 3G99|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:Pal complex-9 | X-ray diffraction | 1.81 | 32 | 2009-04-21 | ||||
| 133 | 3FYL|1|C+ 3FYL|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:CGT complex | X-ray diffraction | 1.63 | 32 | 2009-04-21 | ||||
| 134 | 3OJS|1|C+ 3OJS|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Snapshots of the large fragment of DNA polymerase I from Thermus Aquaticus processing C5 modified thymidines | X-ray diffraction | 1.9 | 28 | 2010-12-15 | ||||
| 135 | 3G6Q|1|C+ 3G6Q|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:FKBP5 binding site complex-9 | X-ray diffraction | 2.26 | 32 | 2009-04-21 | ||||
| 136 | 3G6U|1|C+ 3G6U|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3') | GR DNA-binding domain:FKBP5 16bp complex-49 | X-ray diffraction | 1.9 | 32 | 2009-04-21 | ||||
| 137 | 3G8X|1|C+ 3G8X|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:GilZ 16bp complex-65 | X-ray diffraction | 2.05 | 32 | 2009-04-21 | ||||
| 138 | 2I9G|1|T+ 2I9G|1|P+ 2I9G|1|D | 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | DNA Polymerase Beta with a Benzo[c]phenanthrene diol epoxide adducted guanine base | X-ray diffraction | 2.1 | 31 | 2006-10-24 | ||||
| 139 | 3G6T|1|C+ 3G6T|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3') | GR gamma DNA-binding domain:FKBP5 16bp complex-34 | X-ray diffraction | 1.9 | 32 | 2009-04-21 | ||||
| 140 | 2P66|1|B+ 2P66|1|C+ 2P66|1|D | DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3'), DNA (5'-D(P*(3DR)P*GP*TP*CP*GP*G)-3') | Human DNA Polymerase beta complexed with tetrahydrofuran (abasic site) containing DNA | X-ray diffraction | 2.5 | 33 | 2007-04-10 | ||||
| 141 | 1GU5|1|C+ 1GU5|1|D | 5'-D(*AP*TP*GP*AP*TP*TP*GP*GP*CP*CP* AP*AP*CP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*GP*TP*TP*GP*GP*CP* CP*AP*AP*TP*CP*A)-3' | synthetic construct | Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter | X-ray diffraction | 2.1 | 32 | 2003-06-26 | |||
| 142 | 3G97|1|C+ 3G97|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA-binding domain:GilZ 16bp complex-9 | X-ray diffraction | 2.08 | 32 | 2009-04-21 | ||||
| 143 | 1TRR|1|C+ 1TRR|1|I | DNA (5'-D(*AP*GP*CP*GP*TP*AP*CP*TP*AP*GP*TP*AP*CP*GP*CP*T)-3') | TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX | X-ray diffraction | 2.4 | 32 | 1993-10-21 | ||||
| 144 | 1TRR|1|F+ 1TRR|1|L | DNA (5'-D(*AP*GP*CP*GP*TP*AP*CP*TP*AP*GP*TP*AP*CP*GP*CP*T)-3') | TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX | X-ray diffraction | 2.4 | 32 | 1993-10-21 | ||||
| 145 | 3OJU|1|C+ 3OJU|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies | X-ray diffraction | 2 | 26 | 2010-12-15 | ||||
| 146 | 2ISO|1|T+ 2ISO|1|P+ 2ISO|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-difluoromethylene triphosphate | X-ray diffraction | 2.1 | 31 | 2007-01-30 | ||||
| 147 | 3JR5|1|B+ 3JR5|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(OGX)P*AP*GP*TP*CP*TP*AP*CP*C)-3') | MutM lesion recognition control complex with N174C crosslinking site | X-ray diffraction | 1.704 | 29 | 2009-11-03 | ||||
| 148 | 3GPY|1|B+ 3GPY|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*T*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Lesion Recognition Complex 3 (LRC3) | X-ray diffraction | 1.85 | 31 | 2009-11-10 | ||||
| 149 | 2ISP|1|T+ 2ISP|1|P+ 2ISP|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-methylene triphosphate | X-ray diffraction | 2.2 | 31 | 2007-01-30 | ||||
| 150 | 1DP7|1|D | DNA (5'-D(*CP*GP*(BRU)P*TP*AP*CP*CP*AP*(BRU)P*GP*GP*TP*AP*AP*CP*G)-3') | COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE | X-ray diffraction | 1.5 | 16 | 2000-03-06 | ||||
| 151 | 3G8U|1|C+ 3G8U|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)-3') | DNA binding domain:GilZ 16bp complex-5 | X-ray diffraction | 1.9 | 32 | 2009-04-21 | ||||
| 152 | 3GPU|1|B+ 3GPU|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3') | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex | X-ray diffraction | 1.62 | 25 | 2009-11-10 | ||||
| 153 | 1HJC|1|B+ 1HJC|1|C | DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)-3'), DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)-3') | Homo sapiens | CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER | X-ray diffraction | 2.65 | 32 | 2001-03-09 | |||
| 154 | 3GO8|1|B+ 3GO8|1|C | 5'-D(*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*C)-3', 5'-D(P*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*G)-3' | synthetic construct | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-loop deletion complex | X-ray diffraction | 1.89 | 28 | 2009-12-15 | |||
| 155 | 1HJC|1|E+ 1HJC|1|F | DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)-3'), DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)-3') | Homo sapiens | CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER | X-ray diffraction | 2.65 | 32 | 2001-03-09 | |||
| 156 | 1BPY|1|T+ 1BPY|1|P+ 1BPY|1|D | DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*DOC)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3') | synthetic construct | HUMAN DNA POLYMERASE BETA COMPLEXED WITH GAPPED DNA AND DDCTP | X-ray diffraction | 2.2 | 31 | 1997-06-16 | |||
| 157 | 1BPZ|1|T+ 1BPZ|1|P+ 1BPZ|1|D | DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3') | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA | X-ray diffraction | 2.6 | 32 | 1997-06-16 | ||||
| 158 | 1BPX|1|T+ 1BPX|1|P+ 1BPX|1|D | DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3') | DNA POLYMERASE BETA/DNA COMPLEX | X-ray diffraction | 2.4 | 31 | 1997-06-16 | ||||
| 159 | 3GP1|1|B+ 3GP1|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*CP**C)-3', 5'-D(P*TP*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*CP*C)-3' | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-V222P complex | X-ray diffraction | 2.05 | 26 | 2009-11-10 | ||||
| 160 | 3GQ3|1|B+ 3GQ3|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3') | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC5-loop deletion complex | X-ray diffraction | 1.83 | 27 | 2009-11-10 | ||||
| 161 | 3GPX|1|B+ 3GPX|1|C | DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*AP*GP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Interrogation Complex 4 (IC4) | X-ray diffraction | 1.78 | 24 | 2009-11-10 | ||||
| 162 | 3GQ4|1|B+ 3GQ4|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Lesion Recognition Complex 5 (LRC5) | X-ray diffraction | 1.7 | 23 | 2009-11-10 | ||||
| 163 | 3GPP|1|B+ 3GPP|1|C | DNA (5'-D(P*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*C)-3'), DNA (5'-D(P*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*C)-3') | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-T224P complex | X-ray diffraction | 2.15 | 26 | 2009-11-10 | ||||
| 164 | 3GQ5|1|B+ 3GQ5|1|C | DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*T*CP*CP*GP*GP*GP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Interrogation Complex 5 (IC5) | X-ray diffraction | 1.9 | 22 | 2009-11-10 | ||||
| 165 | 1D16|1|A | DNA (5'-D(*CP*GP*CP*GP*CP*GP*TP*TP*TP*TP*CP*GP*CP*GP*CP*G)-3') | STRUCTURE OF A T4 HAIRPIN LOOP ON A Z-DNA STEM AND COMPARISON WITH A-RNA AND B-DNA LOOPS | X-ray diffraction | 2.1 | 16 | 1989-01-09 | ||||
| 166 | 3JR4|1|B+ 3JR4|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*G*CP*GP*TP*CP*CP*AP*(GX1)P*GP*TP*CP*TP*AP*CP*C)-3') | MutM interrogating an extrahelical G | X-ray diffraction | 2.601 | 22 | 2009-11-03 | ||||
| 167 | 3IGC|1|D+ 3IGC|1|B+ 3IGC|1|C | 5'-D(*AP*TP*TP*CP*C)-3', 5'-D(*CP*GP*GP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*GP*TP*GP*TP*CP*GP*CP*CP*CP*TP*T)-3' | Smallpox virus topoisomerase-DNA transition state | X-ray diffraction | 2.1 | 32 | 2010-03-02 | ||||
| 168 | 3CO7|1|A+ 3CO7|1|B | DNA (5'-D(*DCP*DAP*DAP*DAP*DAP*DTP*DGP*DTP*DAP*DAP*DAP*DCP*DAP*DAP*DGP*DA)-3'), DNA (5'-D(*DTP*DCP*DTP*DTP*DGP*DTP*DTP*DTP*DAP*DCP*DAP*DTP*DTP*DTP*DTP*DG)-3') | Crystal Structure of FoxO1 DBD Bound to DBE2 DNA | X-ray diffraction | 2.91 | 32 | 2008-09-16 | ||||
| 169 | 3CO7|1|D+ 3CO7|1|E | DNA (5'-D(*DCP*DAP*DAP*DAP*DAP*DTP*DGP*DTP*DAP*DAP*DAP*DCP*DAP*DAP*DGP*DA)-3'), DNA (5'-D(*DTP*DCP*DTP*DTP*DGP*DTP*DTP*DTP*DAP*DCP*DAP*DTP*DTP*DTP*DTP*DG)-3') | Crystal Structure of FoxO1 DBD Bound to DBE2 DNA | X-ray diffraction | 2.91 | 32 | 2008-09-16 | ||||
| 170 | 1DFM|1|C+ 1DFM|1|D | DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3') | Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer | X-ray diffraction | 1.5 | 32 | 2000-02-21 | ||||
| 171 | 1D2I|1|C+ 1D2I|1|D | DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3') | CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER | X-ray diffraction | 1.7 | 32 | 2000-02-21 | ||||
| 172 | 1CDW|1|B+ 1CDW|1|C | DNA (5'-D(*CP*AP*GP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*CP*TP*G)-3') | HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA | X-ray diffraction | 1.9 | 32 | 1996-12-23 | ||||
| 173 | 1G2F|1|D+ 1G2F|1|E | 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3' | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-ray diffraction | 2 | 32 | 2001-09-07 | ||||
| 174 | 1G2F|1|A+ 1G2F|1|B | 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3' | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-ray diffraction | 2 | 32 | 2001-09-07 | ||||
| 175 | 1PUE|1|C+ 1PUE|1|D | DNA (5'-D(*AP*AP*AP*AP*AP*GP*GP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*CP*CP*TP*TP*TP*T)-3') | synthetic construct | PU.1 ETS DOMAIN-DNA COMPLEX | X-ray diffraction | 2.1 | 32 | 1997-02-12 | |||
| 176 | 1G2D|1|D+ 1G2D|1|E | 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3' | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) | X-ray diffraction | 2.2 | 32 | 2001-09-07 | ||||
| 177 | 1PUE|1|A+ 1PUE|1|B | DNA (5'-D(*AP*AP*AP*AP*AP*GP*GP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*CP*CP*TP*TP*TP*T)-3') | synthetic construct | PU.1 ETS DOMAIN-DNA COMPLEX | X-ray diffraction | 2.1 | 32 | 1997-02-12 | |||
| 178 | 1G2D|1|A+ 1G2D|1|B | 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3' | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) | X-ray diffraction | 2.2 | 32 | 2001-09-07 | ||||
| 179 | 1YTF|1|E+ 1YTF|1|F | DNA (5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*AP*TP*GP*TP*AP*TP*AP*TP*AP*AP*AP*AP*C)-3') | YEAST TFIIA/TBP/DNA COMPLEX | X-ray diffraction | 2.5 | 32 | 1996-06-20 | ||||
| 180 | 1JJ4|1|C+ 1JJ4|1|D | E2 binding site DNA | Human papillomavirus type 18 E2 DNA-binding domain bound to its DNA target | X-ray diffraction | 2.4 | 32 | 2001-07-13 | ||||
| 181 | 1CKT|1|B+ 1CKT|1|C | DNA (5'-D(*CP*CP*(5IU)P*CP*TP*CP*TP*GP*GP*AP*CP*CP*TP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*GP*TP*CP*CP*AP*GP*AP*GP*AP*GP*G)-3') | CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX | X-ray diffraction | 2.5 | 32 | 1999-06-30 | ||||
| 182 | 1BY4|1|G+ 1BY4|1|H | DNA (5'-D(*C*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*A)-3') | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA | X-ray diffraction | 2.1 | 31 | 2000-01-12 | ||||
| 183 | 1IG7|1|C+ 1IG7|1|B | 5'-D(*CP*AP*CP*TP*AP*AP*TP*TP*GP*AP*AP*GP*G)-3', 5'-D(P*TP*CP*CP*TP*TP*CP*AP*AP*TP*TP*AP*GP*TP*GP*AP*C)-3' | Msx-1 Homeodomain/DNA Complex Structure | X-ray diffraction | 2.2 | 29 | 2001-04-23 | ||||
| 184 | 1CF7|1|C+ 1CF7|1|D | DNA (5'-D(*AP*TP*TP*TP*TP*CP*GP*CP*GP*CP*GP*GP*TP*TP*TP*T)-3'), DNA (5'-D(*TP*AP*AP*AP*AP*CP*CP*GP*CP*GP*CP*GP*AP*AP*AP*A)-3') | STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP | X-ray diffraction | 2.6 | 30 | 1999-04-02 | ||||
| 185 | 1VOL|1|C+ 1VOL|1|D | DNA (5'-D(*CP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*G)-3') | TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX | X-ray diffraction | 2.7 | 32 | 1996-11-08 | ||||
| 186 | 1BY4|1|E+ 1BY4|1|F | DNA (5'-D(*C*TP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*A)-3') | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA | X-ray diffraction | 2.1 | 30 | 2000-01-12 | ||||
| 187 | 1YFL|1|F+ 1YFL|1|G | 5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3' | T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base | X-ray diffraction | 3.09 | 32 | 2005-05-17 | ||||
| 188 | 1YFL|1|H+ 1YFL|1|I | 5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3' | T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base | X-ray diffraction | 3.09 | 32 | 2005-05-17 | ||||
| 189 | 1MQ2|1|T+ 1MQ2|1|P+ 1MQ2|1|D | 5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(2DA))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine and dAMP | X-ray diffraction | 3.1 | 31 | 2003-01-28 | ||||
| 190 | 1ECR|1|B+ 1ECR|1|C | DNA (5'-D(*TP*AP*GP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3, DNA (5'-D(*TP*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3 | ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH DNA | X-ray diffraction | 2.7 | 30 | 1997-09-05 | ||||
| 191 | 1MQ3|1|T+ 1MQ3|1|P+ 1MQ3|1|D | 5'-D(*CP*CP*GP*AP*CP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine Template Paired with dCTP | X-ray diffraction | 2.8 | 31 | 2003-01-28 | ||||
| 192 | 1UAA|1|C | DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') | Escherichia coli | E. COLI REP HELICASE/DNA COMPLEX | X-ray diffraction | 3 | 16 | 1998-07-09 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2011-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1UAA|1|C | E. COLI REP HELICASE/DNA COMPLEX | X-RAY DIFFRACTION | 3 | 16 | enzyme,hydrolase | ||
| 2 | 2AQ4|1|T+ 2AQ4|1|P | Ternary complex of the catalytic core of REV1 with DNA and dCTP. | X-RAY DIFFRACTION | 2.32 | 28 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase | |
| 3 | 3BJY|1|T+ 3BJY|1|P | Catalytic core of Rev1 in complex with DNA (modified template guanine) and incoming nucleotide | X-RAY DIFFRACTION | 2.41 | 28 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase | |
| 4 | 3GQC|1|J+ 3GQC|1|I | Structure of human Rev1-DNA-dNTP ternary complex | X-RAY DIFFRACTION | 2.5 | 28 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase | |
| 5 | 3GQC|1|F+ 3GQC|1|E | Structure of human Rev1-DNA-dNTP ternary complex | X-RAY DIFFRACTION | 2.5 | 28 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase | |
| 6 | 3GQC|1|H+ 3GQC|1|G | Structure of human Rev1-DNA-dNTP ternary complex | X-RAY DIFFRACTION | 2.5 | 28 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase | |
| 7 | 3GQC|1|L+ 3GQC|1|K | Structure of human Rev1-DNA-dNTP ternary complex | X-RAY DIFFRACTION | 2.5 | 28 | B-form double helix,double helix,structure | DNA replication/repair,enzyme,polymerase,regulatory,transferase | |
| 8 | 1YFH|1|D+ 1YFH|1|E | wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine | X-RAY DIFFRACTION | 3.01 | 32 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 9 | 1YFH|1|F+ 1YFH|1|G | wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine | X-RAY DIFFRACTION | 3.01 | 32 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 10 | 2EWJ|1|B+ 2EWJ|1|C | Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- Locked form | X-RAY DIFFRACTION | 2.7 | 29 | double helix,structure | DNA replication/repair,regulatory | |
| 11 | 2I06|1|B+ 2I06|1|C | Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- Locked form | X-RAY DIFFRACTION | 2.2 | 29 | double helix,structure | DNA replication/repair,regulatory | |
| 12 | 2VE9|1|K+ 2VE9|1|L | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-RAY DIFFRACTION | 1.9 | 30 | B-form double helix,double helix,structure | cell cycle,regulatory | |
| 13 | 2VE9|1|I+ 2VE9|1|J | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-RAY DIFFRACTION | 1.9 | 30 | B-form double helix,double helix,structure | cell cycle,regulatory | |
| 14 | 1NH2|1|E+ 1NH2|1|F | Crystal structure of a yeast TFIIA/TBP/DNA complex | X-RAY DIFFRACTION | 1.9 | 32 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 15 | 1YTF|1|E+ 1YTF|1|F | YEAST TFIIA/TBP/DNA COMPLEX | X-RAY DIFFRACTION | 2.5 | 32 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 16 | 3GPU|1|B+ 3GPU|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex | X-RAY DIFFRACTION | 1.62 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 17 | 3GPX|1|B+ 3GPX|1|C | Sequence-matched MutM Interrogation Complex 4 (IC4) | X-RAY DIFFRACTION | 1.78 | 24 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 18 | 3GO8|1|B+ 3GO8|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-loop deletion complex | X-RAY DIFFRACTION | 1.89 | 28 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 19 | 3GP1|1|B+ 3GP1|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-V222P complex | X-RAY DIFFRACTION | 2.05 | 26 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 20 | 3GPP|1|B+ 3GPP|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-T224P complex | X-RAY DIFFRACTION | 2.15 | 26 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 21 | 2F5O|1|B+ 2F5O|1|C | MutM crosslinked to undamaged DNA sampling G:C base pair IC3 | X-RAY DIFFRACTION | 2.05 | 27 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 22 | 2F5N|1|B+ 2F5N|1|C | MutM crosslinked to undamaged DNA sampling A:T base pair IC1 | X-RAY DIFFRACTION | 2 | 27 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 23 | 2F5S|1|B+ 2F5S|1|C | Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC1 | X-RAY DIFFRACTION | 2.35 | 23 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 24 | 3GPY|1|B+ 3GPY|1|C | Sequence-matched MutM Lesion Recognition Complex 3 (LRC3) | X-RAY DIFFRACTION | 1.85 | 31 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 25 | 3JR5|1|B+ 3JR5|1|C | MutM lesion recognition control complex with N174C crosslinking site | X-RAY DIFFRACTION | 1.704 | 29 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 26 | 2WTU|1|E+ 2WTU|1|F | Crystal structure of Escherichia coli MutS in complex with a 16 basepair oligo containing an A.A mismatch. | X-RAY DIFFRACTION | 3.4 | 32 | B-form double helix,double helix,structure | DNA replication/repair,regulatory | |
| 27 | 2NOB|1|B+ 2NOB|1|C | Structure of catalytically inactive H270A human 8-oxoguanine glycosylase crosslinked to 8-oxoguanine DNA | X-RAY DIFFRACTION | 2.1 | 27 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 28 | 3GQ5|1|B+ 3GQ5|1|C | Sequence-matched MutM Interrogation Complex 5 (IC5) | X-RAY DIFFRACTION | 1.9 | 22 | double helix,structure | enzyme,hydrolase | |
| 29 | 2F5P|1|C+ 2F5P|1|D | MutM crosslinked to undamaged DNA sampling A:T base pair IC2 | X-RAY DIFFRACTION | 2 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 30 | 3GQ3|1|B+ 3GQ3|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC5-loop deletion complex | X-RAY DIFFRACTION | 1.83 | 27 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 31 | 1CKT|1|B+ 1CKT|1|C | CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX | X-RAY DIFFRACTION | 2.5 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),HMG box,other α-helix,regulatory,transcription | |
| 32 | 3F27|1|A+ 3F27|1|B | Structure of Sox17 Bound to DNA | X-RAY DIFFRACTION | 2.75 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),HMG box,other α-helix,regulatory,transcription | |
| 33 | 1L2D|1|B+ 1L2D|1|C | MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex | X-RAY DIFFRACTION | 2 | 23 | double helix,structure | enzyme,hydrolase | |
| 34 | 1L2B|1|B+ 1L2B|1|C+ 1L2B|1|D | MutM (Fpg) DNA End-Product Structure | X-RAY DIFFRACTION | 2.4 | 23 | enzyme,hydrolase | ||
| 35 | 1L1T|1|B+ 1L1T|1|C | MutM (Fpg) Bound to Abasic-Site Containing DNA | X-RAY DIFFRACTION | 1.8 | 23 | double helix,structure | enzyme,hydrolase | |
| 36 | 1L1Z|1|B+ 1L1Z|1|C | MutM (Fpg) Covalent-DNA Intermediate | X-RAY DIFFRACTION | 1.7 | 23 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 37 | 2F5Q|1|B+ 2F5Q|1|C | Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2 | X-RAY DIFFRACTION | 2.35 | 20 | double helix,structure | enzyme,hydrolase | |
| 38 | 3JR4|1|B+ 3JR4|1|C | MutM interrogating an extrahelical G | X-RAY DIFFRACTION | 2.601 | 22 | double helix,structure | enzyme,hydrolase | |
| 39 | 1L2C|1|B+ 1L2C|1|C | MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex | X-RAY DIFFRACTION | 2.2 | 23 | double helix,structure | enzyme,hydrolase | |
| 40 | 3GQ4|1|B+ 3GQ4|1|C | Sequence-matched MutM Lesion Recognition Complex 5 (LRC5) | X-RAY DIFFRACTION | 1.7 | 23 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 41 | 1ZVV|1|R+ 1ZVV|1|T | Crystal structure of a ccpa-crh-dna complex | X-RAY DIFFRACTION | 2.98 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase | |
| 42 | 1ZVV|1|O | Crystal structure of a ccpa-crh-dna complex | X-RAY DIFFRACTION | 2.98 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase | |
| 43 | 1RZR|1|H+ 1RZR|1|R | crystal structure of transcriptional regulator-phosphoprotein-DNA complex | X-RAY DIFFRACTION | 2.8 | 32 | double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase | |
| 44 | 1RZR|1|B+ 1RZR|1|E | crystal structure of transcriptional regulator-phosphoprotein-DNA complex | X-RAY DIFFRACTION | 2.8 | 32 | double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase | |
| 45 | 3OQN|1|B+ 3OQN|1|E | Structure of ccpa-hpr-ser46-p-gntr-down cre | X-RAY DIFFRACTION | 3.3 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase | |
| 46 | 3OQM|1|B+ 3OQM|1|E | structure of ccpa-hpr-ser46p-ackA2 complex | X-RAY DIFFRACTION | 2.96 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),enzyme,helix-turn-helix (HTH),kinase,lambda repressor-like,regulatory,transcription,transferase | |
| 47 | 3EI2|1|G+ 3EI2|1|H | Structure of hsDDB1-drDDB2 bound to a 16 bp abasic site containing DNA-duplex | X-RAY DIFFRACTION | 2.6 | 30 | DNA replication/repair,regulatory | ||
| 48 | 1LQ1|1|G+ 1LQ1|1|H | DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria | X-RAY DIFFRACTION | 2.3 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 49 | 1ECR|1|B+ 1ECR|1|C | ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH DNA | X-RAY DIFFRACTION | 2.7 | 30 | double helix,structure | DNA replication/repair,regulatory | |
| 50 | 2I05|1|B+ 2I05|1|C | Escherichia Coli Replication Terminator Protein (Tus) Complexed With TerA DNA | X-RAY DIFFRACTION | 2.6 | 30 | double helix,structure | DNA replication/repair,regulatory | |
| 51 | 3MFK|1|C+ 3MFK|1|D | Ets1 complex with stromelysin-1 promoter DNA | X-RAY DIFFRACTION | 3 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 52 | 3CO7|1|D+ 3CO7|1|E | Crystal Structure of FoxO1 DBD Bound to DBE2 DNA | X-RAY DIFFRACTION | 2.91 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 53 | 3CO7|1|A+ 3CO7|1|B | Crystal Structure of FoxO1 DBD Bound to DBE2 DNA | X-RAY DIFFRACTION | 2.91 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 54 | 2IVK|1|I+ 2IVK|1|J | Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA | X-RAY DIFFRACTION | 2.9 | 32 | double helix,structure | enzyme,hydrolase,nuclease | |
| 55 | 2D45|1|G+ 2D45|1|H | Crystal structure of the MecI-mecA repressor-operator complex | X-RAY DIFFRACTION | 3.8 | 25 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 56 | 1XSD|1|B | Crystal structure of the BlaI repressor in complex with DNA | X-RAY DIFFRACTION | 2.7 | 16 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 57 | 2D45|1|E+ 2D45|1|F | Crystal structure of the MecI-mecA repressor-operator complex | X-RAY DIFFRACTION | 3.8 | 32 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 58 | 1PUE|1|A+ 1PUE|1|B | PU.1 ETS DOMAIN-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 59 | 1PUE|1|C+ 1PUE|1|D | PU.1 ETS DOMAIN-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 60 | 1TRR|1|C+ 1TRR|1|I | TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX | X-RAY DIFFRACTION | 2.4 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor | |
| 61 | 1TRR|1|F+ 1TRR|1|L | TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX | X-RAY DIFFRACTION | 2.4 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor | |
| 62 | 3MFH|1|T+ 3MFH|1|P | DNA Polymerase Eta in Complex With Undamaged DNA | X-RAY DIFFRACTION | 2 | 24 | double helix,structure | enzyme,polymerase,transferase | |
| 63 | 3OHB|1|T+ 3OHB|1|P | Yeast DNA polymerase eta extending from an 8-oxoG lesion | X-RAY DIFFRACTION | 2 | 24 | double helix,structure | enzyme,polymerase,transferase | |
| 64 | 1DP7|1|D | COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE | X-RAY DIFFRACTION | 1.5 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 65 | 1CIT|1|B+ 1CIT|1|C | DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B | X-RAY DIFFRACTION | 2.7 | 32 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 66 | 1GTW|1|C+ 1GTW|1|D | crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter | X-RAY DIFFRACTION | 1.85 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 67 | 2QL2|1|E+ 2QL2|1|F | Crystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1 bound to DNA | X-RAY DIFFRACTION | 2.5 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription | |
| 68 | 2QL2|1|G+ 2QL2|1|H | Crystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1 bound to DNA | X-RAY DIFFRACTION | 2.5 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription | |
| 69 | 3OA6|1|C+ 3OA6|1|D | Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide | X-RAY DIFFRACTION | 2.35 | 32 | chromatin,structural | ||
| 70 | 3OA6|1|E+ 3OA6|1|F | Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide | X-RAY DIFFRACTION | 2.35 | 32 | chromatin,structural | ||
| 71 | 3FYL|1|C+ 3FYL|1|D | GR DNA binding domain:CGT complex | X-RAY DIFFRACTION | 1.63 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 72 | 3G9M|1|C+ 3G9M|1|D | GR DNA-binding domain:Sgk 16bp complex-44 | X-RAY DIFFRACTION | 1.61 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 73 | 3G9O|1|C+ 3G9O|1|D | GR DNA-binding domain:Sgk 16bp complex-9 | X-RAY DIFFRACTION | 1.65 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 74 | 3G9P|1|C+ 3G9P|1|D | GR DNA binding domain:Sgk 16bp complex-7 | X-RAY DIFFRACTION | 1.652 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 75 | 3G99|1|C+ 3G99|1|D | GR DNA binding domain:Pal complex-9 | X-RAY DIFFRACTION | 1.81 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 76 | 3G97|1|C+ 3G97|1|D | GR DNA-binding domain:GilZ 16bp complex-9 | X-RAY DIFFRACTION | 2.08 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 77 | 3G8X|1|C+ 3G8X|1|D | GR DNA binding domain:GilZ 16bp complex-65 | X-RAY DIFFRACTION | 2.05 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 78 | 3G8U|1|C+ 3G8U|1|D | DNA binding domain:GilZ 16bp complex-5 | X-RAY DIFFRACTION | 1.9 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 79 | 3G6U|1|C+ 3G6U|1|D | GR DNA-binding domain:FKBP5 16bp complex-49 | X-RAY DIFFRACTION | 1.9 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 80 | 3G6Q|1|C+ 3G6Q|1|D | GR DNA binding domain:FKBP5 binding site complex-9 | X-RAY DIFFRACTION | 2.26 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 81 | 3G6T|1|C+ 3G6T|1|D | GR gamma DNA-binding domain:FKBP5 16bp complex-34 | X-RAY DIFFRACTION | 1.9 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 82 | 1GU5|1|C+ 1GU5|1|D | Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter | X-RAY DIFFRACTION | 2.1 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 83 | 2E43|1|C+ 2E43|1|D | Crystal structure of C/EBPbeta Bzip homodimer K269A mutant bound to A High Affinity DNA fragment | X-RAY DIFFRACTION | 2.1 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 84 | 1GU4|1|C+ 1GU4|1|D | Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment | X-RAY DIFFRACTION | 1.8 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 85 | 2E42|1|C+ 2E42|1|D | Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment | X-RAY DIFFRACTION | 1.8 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 86 | 3JTG|1|B+ 3JTG|1|C | Crystal structure of mouse Elf3 C-terminal DNA-binding domain in complex with type II TGF-beta receptor promoter DNA | X-RAY DIFFRACTION | 2.2 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 87 | 2WT7|1|C+ 2WT7|1|D | Crystal structure of the bZIP heterodimeric complex MafB:cFos bound to DNA | X-RAY DIFFRACTION | 2.3 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 88 | 2C6Y|1|C+ 2C6Y|1|D | Crystal structure of interleukin enhancer-binding factor 1 bound to DNA | X-RAY DIFFRACTION | 2.4 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 89 | 3COA|1|D+ 3COA|1|E | Crystal Structure of FoxO1 DBD Bound to IRE DNA | X-RAY DIFFRACTION | 2.2 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 90 | 3CO6|1|A+ 3CO6|1|B | Crystal Structure of FoxO1 DBD Bound to DBE1 DNA | X-RAY DIFFRACTION | 2.1 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 91 | 3COA|1|A+ 3COA|1|B | Crystal Structure of FoxO1 DBD Bound to IRE DNA | X-RAY DIFFRACTION | 2.2 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 92 | 1HJC|1|E+ 1HJC|1|F | CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER | X-RAY DIFFRACTION | 2.65 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,runt,transcription | |
| 93 | 1HJC|1|B+ 1HJC|1|C | CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER | X-RAY DIFFRACTION | 2.65 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,runt,transcription | |
| 94 | 1G2F|1|D+ 1G2F|1|E | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-RAY DIFFRACTION | 2 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 95 | 1G2F|1|A+ 1G2F|1|B | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-RAY DIFFRACTION | 2 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 96 | 1G2D|1|A+ 1G2D|1|B | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) | X-RAY DIFFRACTION | 2.2 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 97 | 1G2D|1|D+ 1G2D|1|E | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) | X-RAY DIFFRACTION | 2.2 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 98 | 2QNF|1|C+ 2QNF|1|D | Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches | X-RAY DIFFRACTION | 3 | 32 | enzyme,hydrolase,nuclease | ||
| 99 | 1IG7|1|C+ 1IG7|1|B | Msx-1 Homeodomain/DNA Complex Structure | X-RAY DIFFRACTION | 2.2 | 29 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 100 | 1JXL|1|T+ 1JXL|1|P | Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide | X-RAY DIFFRACTION | 2.1 | 27 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 101 | 1D2I|1|C+ 1D2I|1|D | CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER | X-RAY DIFFRACTION | 1.7 | 32 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 102 | 1DFM|1|C+ 1DFM|1|D | Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer | X-RAY DIFFRACTION | 1.5 | 32 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 103 | 2NTZ|1|W+ 2NTZ|1|Y | Structure of a ParB-DNA complex reveals a double B-box interaction | X-RAY DIFFRACTION | 3.35 | 32 | centromere,chromatin,structural | ||
| 104 | 2FVP|1|B | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-RAY DIFFRACTION | 2.25 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 105 | 2FVR|1|B | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-RAY DIFFRACTION | 2.2 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 106 | 2FVS|1|B | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-RAY DIFFRACTION | 2.35 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 107 | 2FVQ|1|B | A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus | X-RAY DIFFRACTION | 2.3 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 108 | 1N4L|1|B+ 1N4L|1|D | A DNA analogue of the polypurine tract of HIV-1 | X-RAY DIFFRACTION | 2 | 32 | enzyme,polymerase,transferase | ||
| 109 | 3LAP|1|K+ 3LAP|1|L | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-RAY DIFFRACTION | 2.15 | 32 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 110 | 3LAP|1|I+ 3LAP|1|J | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-RAY DIFFRACTION | 2.15 | 32 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 111 | 3LAP|1|G+ 3LAP|1|H | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-canavanine. | X-RAY DIFFRACTION | 2.15 | 32 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 112 | 3LAJ|1|I+ 3LAJ|1|J | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-RAY DIFFRACTION | 2.306 | 32 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 113 | 3LAJ|1|K+ 3LAJ|1|L | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-RAY DIFFRACTION | 2.306 | 32 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 114 | 3LAJ|1|G+ 3LAJ|1|H | The Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound to its DNA Operator and L-arginine. | X-RAY DIFFRACTION | 2.306 | 32 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | ||
| 115 | 3ERE|1|A+ 3ERE|1|B | Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator | X-RAY DIFFRACTION | 2.5 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 116 | 2NTZ|1|E+ 2NTZ|1|U | Structure of a ParB-DNA complex reveals a double B-box interaction | X-RAY DIFFRACTION | 3.35 | 32 | centromere,chromatin,structural | ||
| 117 | 3IGC|1|D+ 3IGC|1|B+ 3IGC|1|C | Smallpox virus topoisomerase-DNA transition state | X-RAY DIFFRACTION | 2.1 | 32 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 118 | 1RYR|1|C+ 1RYR|1|B | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 2.28 | 29 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 119 | 1BY4|1|E+ 1BY4|1|F | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA | X-RAY DIFFRACTION | 2.1 | 30 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 120 | 1BY4|1|G+ 1BY4|1|H | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA | X-RAY DIFFRACTION | 2.1 | 31 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 121 | 2QNF|1|E+ 2QNF|1|F | Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches | X-RAY DIFFRACTION | 3 | 32 | enzyme,hydrolase,nuclease | ||
| 122 | 1CF7|1|C+ 1CF7|1|D | STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP | X-RAY DIFFRACTION | 2.6 | 30 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription,winged helix/forkhead | |
| 123 | 2RDJ|1|D+ 2RDJ|1|C | Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms | X-RAY DIFFRACTION | 2.2 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 124 | 2GEQ|1|C+ 2GEQ|1|D | Crystal Structure of a p53 Core Dimer Bound to DNA | X-RAY DIFFRACTION | 2.3 | 28 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription | |
| 125 | 1S0M|1|F+ 1S0M|1|E | Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase | X-RAY DIFFRACTION | 2.7 | 29 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 126 | 1S0M|1|D+ 1S0M|1|C | Crystal structure of a Benzo[a]pyrene Diol Epoxide adduct in a ternary complex with a DNA polymerase | X-RAY DIFFRACTION | 2.7 | 29 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 127 | 3N7B|1|C+ 3N7B|1|D | SgrAI bound to secondary site DNA and Ca(II) | X-RAY DIFFRACTION | 2.65 | 32 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 128 | 3N78|1|C+ 3N78|1|D | SgrAI bound to Secondary Site DNA and Mg(II) | X-RAY DIFFRACTION | 2.95 | 32 | double helix,structure | enzyme,hydrolase,nuclease | |
| 129 | 1YFL|1|H+ 1YFL|1|I | T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base | X-RAY DIFFRACTION | 3.09 | 32 | enzyme,methylase,transferase | ||
| 130 | 1YFL|1|F+ 1YFL|1|G | T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base | X-RAY DIFFRACTION | 3.09 | 32 | enzyme,methylase,transferase | ||
| 131 | 2AYB|1|C+ 2AYB|1|D | Crystal structure of HPV6a E2 DNA Binding Domain bound to a 16 base pair DNA target | X-RAY DIFFRACTION | 3.2 | 32 | B-form double helix,double helix,structure | regulatory,transcription | |
| 132 | 1JJ4|1|C+ 1JJ4|1|D | Human papillomavirus type 18 E2 DNA-binding domain bound to its DNA target | X-RAY DIFFRACTION | 2.4 | 32 | B-form double helix,double helix,structure | regulatory,transcription | |
| 133 | 3BS1|1|B+ 3BS1|1|C | Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with a Novel Mode of Binding | X-RAY DIFFRACTION | 1.6 | 32 | B-form double helix,double helix,structure | regulatory,transcription | |
| 134 | 1LQ1|1|E+ 1LQ1|1|F | DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria | X-RAY DIFFRACTION | 2.3 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 135 | 1L3V|1|C+ 1L3V|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 15 base pairs of duplex DNA following addition of dTTP, dATP, dCTP, and dGTP residues. | X-RAY DIFFRACTION | 1.71 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 136 | 1NK5|1|C+ 1NK5|1|B | ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 2.1 | 28 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 137 | 1NK4|1|C+ 1NK4|1|B | GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 1.6 | 19 | enzyme,polymerase,transferase | ||
| 138 | 1N48|1|C+ 1N48|1|B | Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion | X-RAY DIFFRACTION | 2.2 | 29 | enzyme,polymerase,transferase | ||
| 139 | 3LWL|1|C+ 3LWL|1|B | Structure of Klenow fragment of Taq polymerase in complex with an abasic site | X-RAY DIFFRACTION | 2.25 | 26 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 140 | 3OJS|1|C+ 3OJS|1|B | Snapshots of the large fragment of DNA polymerase I from Thermus Aquaticus processing C5 modified thymidines | X-RAY DIFFRACTION | 1.9 | 28 | double helix,structure | enzyme,polymerase,transferase | |
| 141 | 3M8R|1|C+ 3M8R|1|B | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-ethylated dTTP | X-RAY DIFFRACTION | 2 | 28 | double helix,structure | enzyme,polymerase,transferase | |
| 142 | 3M8S|1|C+ 3M8S|1|B | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-methylated dTTP | X-RAY DIFFRACTION | 2.2 | 28 | double helix,structure | enzyme,polymerase,transferase | |
| 143 | 3OJU|1|C+ 3OJU|1|B | Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies | X-RAY DIFFRACTION | 2 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 144 | 2HW3|1|C+ 2HW3|1|B | T:O6-methyl-guanine pair in the polymerase postinsertion site (-1 basepair position) | X-RAY DIFFRACTION | 1.98 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 145 | 2HHU|1|C+ 2HHU|1|B | C:O6-methyl-guanine in the polymerase postinsertion site (-1 basepair position) | X-RAY DIFFRACTION | 1.8 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 146 | 1NKE|1|C+ 1NKE|1|B | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. | X-RAY DIFFRACTION | 1.8 | 23 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 147 | 1L3U|1|C+ 1L3U|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 11 base pairs of duplex DNA following addition of a dTTP and a dATP residue. | X-RAY DIFFRACTION | 1.8 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 148 | 1NJY|1|C+ 1NJY|1|B | THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 2 | 24 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase | |
| 149 | 1NJZ|1|C+ 1NJZ|1|B | CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 2 | 21 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase | |
| 150 | 1L3T|1|C+ 1L3T|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 10 base pairs of duplex DNA following addition of a single dTTP residue | X-RAY DIFFRACTION | 1.7 | 22 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 151 | 2HHV|1|C+ 2HHV|1|B | T:O6-methyl-guanine in the polymerase-2 basepair position | X-RAY DIFFRACTION | 1.55 | 27 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 152 | 2HHT|1|C+ 2HHT|1|B | C:O6-methyl-guanine pair in the polymerase-2 basepair position | X-RAY DIFFRACTION | 2.05 | 26 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 153 | 1L5U|1|C+ 1L5U|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 12 base pairs of duplex DNA following addition of a dTTP, a dATP, and a dCTP residue. | X-RAY DIFFRACTION | 1.95 | 26 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 154 | 3IAY|1|T+ 3IAY|1|P | Ternary complex of DNA polymerase delta | X-RAY DIFFRACTION | 2 | 28 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 155 | 1ZJM|1|T+ 1ZJM|1|P+ 1ZJM|1|D | Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus | X-RAY DIFFRACTION | 2.1 | 31 | enzyme,polymerase,transferase | ||
| 156 | 3C2L|1|T+ 3C2L|1|P+ 3C2L|1|D | Ternary complex of DNA POLYMERASE BETA with a C:DAPCPP mismatch in the active site | X-RAY DIFFRACTION | 2.6 | 31 | enzyme,polymerase,transferase | ||
| 157 | 3ISD|1|T+ 3ISD|1|P+ 3ISD|1|D | Ternary complex of human DNA polymerase beta with an abasic site (THF): DAPCPP mismatch | X-RAY DIFFRACTION | 2.6 | 31 | enzyme,polymerase,transferase | ||
| 158 | 3C2M|1|T+ 3C2M|1|P+ 3C2M|1|D | Ternary complex of DNA POLYMERASE BETA with a G:dAPCPP mismatch in the active site | X-RAY DIFFRACTION | 2.15 | 31 | enzyme,polymerase,transferase | ||
| 159 | 1MQ3|1|T+ 1MQ3|1|P+ 1MQ3|1|D | Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine Template Paired with dCTP | X-RAY DIFFRACTION | 2.8 | 31 | enzyme,polymerase,transferase | ||
| 160 | 1BPY|1|T+ 1BPY|1|P+ 1BPY|1|D | HUMAN DNA POLYMERASE BETA COMPLEXED WITH GAPPED DNA AND DDCTP | X-RAY DIFFRACTION | 2.2 | 31 | enzyme,polymerase,transferase | ||
| 161 | 2FMP|1|T+ 2FMP|1|P+ 2FMP|1|D | DNA Polymerase beta with a terminated gapped DNA substrate and ddCTP with sodium in the catalytic site | X-RAY DIFFRACTION | 1.65 | 31 | enzyme,polymerase,transferase | ||
| 162 | 2FMQ|1|B+ 2FMQ|1|C+ 2FMQ|1|D | Sodium in active site of DNA Polymerase Beta | X-RAY DIFFRACTION | 2.2 | 31 | enzyme,polymerase,transferase | ||
| 163 | 3MBY|1|T+ 3MBY|1|P+ 3MBY|1|D | Ternary complex of DNA Polymerase BETA with template base A and 8oxodGTP in the active site with a dideoxy terminated primer | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 164 | 3JPS|1|T+ 3JPS|1|P+ 3JPS|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro methyl methylene triphosphate | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 165 | 3JPP|1|T+ 3JPP|1|P+ 3JPP|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-MonoMethyl Methylene triphosphate | X-RAY DIFFRACTION | 2.1 | 31 | enzyme,polymerase,transferase | ||
| 166 | 3JPO|1|T+ 3JPO|1|P+ 3JPO|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 167 | 3JPQ|1|T+ 3JPQ|1|P+ 3JPQ|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monoBromo methylene triphosphate | X-RAY DIFFRACTION | 1.9 | 31 | enzyme,polymerase,transferase | ||
| 168 | 3JPT|1|T+ 3JPT|1|P+ 3JPT|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro chloro methylene triphosphate | X-RAY DIFFRACTION | 2.15 | 31 | enzyme,polymerase,transferase | ||
| 169 | 2PXI|1|T+ 2PXI|1|P+ 2PXI|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monofluoromethylene triphosphate | X-RAY DIFFRACTION | 2.1 | 31 | enzyme,polymerase,transferase | ||
| 170 | 2ISO|1|T+ 2ISO|1|P+ 2ISO|1|D | Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-difluoromethylene triphosphate | X-RAY DIFFRACTION | 2.1 | 31 | enzyme,polymerase,transferase | ||
| 171 | 2ISP|1|T+ 2ISP|1|P+ 2ISP|1|D | Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-methylene triphosphate | X-RAY DIFFRACTION | 2.2 | 31 | enzyme,polymerase,transferase | ||
| 172 | 3JPN|1|T+ 3JPN|1|P+ 3JPN|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dichloro methylene triphosphate | X-RAY DIFFRACTION | 2.15 | 31 | enzyme,polymerase,transferase | ||
| 173 | 3JPR|1|T+ 3JPR|1|P+ 3JPR|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-dimethyl methylene triphosphate | X-RAY DIFFRACTION | 2.1 | 31 | enzyme,polymerase,transferase | ||
| 174 | 3LK9|1|T+ 3LK9|1|P+ 3LK9|1|D | DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P | X-RAY DIFFRACTION | 2.5 | 31 | enzyme,polymerase,transferase | ||
| 175 | 3GDX|1|T+ 3GDX|1|P+ 3GDX|1|D | Dna polymerase beta with a gapped DND substrate and dTMP(CF2)PP | X-RAY DIFFRACTION | 2.2 | 31 | enzyme,polymerase,transferase | ||
| 176 | 2FMS|1|T+ 2FMS|1|P+ 2FMS|1|D | DNA Polymerase beta with a gapped DNA substrate and dUMPNPP with magnesium in the catalytic site | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 177 | 3C2K|1|T+ 3C2K|1|P+ 3C2K|1|D | DNA POLYMERASE BETA with a gapped DNA substrate and DUMPNPP with Manganese in the active site | X-RAY DIFFRACTION | 2.4 | 31 | enzyme,polymerase,transferase | ||
| 178 | 1MQ2|1|T+ 1MQ2|1|P+ 1MQ2|1|D | Human DNA Polymerase Beta Complexed With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine and dAMP | X-RAY DIFFRACTION | 3.1 | 31 | enzyme,polymerase,transferase | ||
| 179 | 3ISC|1|T+ 3ISC|1|P+ 3ISC|1|D | Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 180 | 3ISB|1|T+ 3ISB|1|P+ 3ISB|1|D | Binary complex of human DNA polymerase beta with a gapped DNA | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 181 | 2P66|1|B+ 2P66|1|C+ 2P66|1|D | Human DNA Polymerase beta complexed with tetrahydrofuran (abasic site) containing DNA | X-RAY DIFFRACTION | 2.5 | 33 | enzyme,polymerase,transferase | ||
| 182 | 1TVA|1|T+ 1TVA|1|P+ 1TVA|1|D | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE THYMIDINE AND INCOMING CYTIDINE | X-RAY DIFFRACTION | 2.6 | 32 | enzyme,polymerase,transferase | ||
| 183 | 1TV9|1|T+ 1TV9|1|P+ 1TV9|1|D | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE ADENINE AND INCOMING CYTIDINE | X-RAY DIFFRACTION | 2 | 32 | enzyme,polymerase,transferase | ||
| 184 | 1BPX|1|T+ 1BPX|1|P+ 1BPX|1|D | DNA POLYMERASE BETA/DNA COMPLEX | X-RAY DIFFRACTION | 2.4 | 31 | enzyme,polymerase,transferase | ||
| 185 | 1BPZ|1|T+ 1BPZ|1|P+ 1BPZ|1|D | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA | X-RAY DIFFRACTION | 2.6 | 32 | enzyme,polymerase,transferase | ||
| 186 | 2I9G|1|T+ 2I9G|1|P+ 2I9G|1|D | DNA Polymerase Beta with a Benzo[c]phenanthrene diol epoxide adducted guanine base | X-RAY DIFFRACTION | 2.1 | 31 | enzyme,polymerase,transferase | ||
| 187 | 1ZJN|1|T+ 1ZJN|1|P+ 1ZJN|1|D | Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus with dGTP | X-RAY DIFFRACTION | 2.61 | 31 | enzyme,polymerase,transferase | ||
| 188 | 1L3S|1|C+ 1L3S|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment complexed to 9 base pairs of duplex DNA. | X-RAY DIFFRACTION | 1.7 | 23 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 189 | 1VOL|1|C+ 1VOL|1|D | TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX | X-RAY DIFFRACTION | 2.7 | 32 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,enzyme,regulatory,transcription,transferase | |
| 190 | 1CDW|1|B+ 1CDW|1|C | HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA | X-RAY DIFFRACTION | 1.9 | 32 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 191 | 1D16|1|A | STRUCTURE OF A T4 HAIRPIN LOOP ON A Z-DNA STEM AND COMPARISON WITH A-RNA AND B-DNA LOOPS | X-RAY DIFFRACTION | 2.1 | 16 | Z-form double helix,double helix,structure | ||
| 192 | 3G9I|1|D+ 3G9I|1|C | GR DNA Binding domain: Pal complex-35 | X-RAY DIFFRACTION | 1.85 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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