Equivalence class DNA_4.0_96364.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3FL6|1|C+ 3FL6|1|D (rep) | 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3' | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-ray diffraction | 1.17 | 14 | 2009-12-29 | ||||
| 2 | 3FL6|1|A+ 3FL6|1|B | 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3' | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-ray diffraction | 1.17 | 14 | 2009-12-29 | ||||
| 3 | 1M6R|1|A+ 1M6R|1|B | 5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3' | Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang | X-ray diffraction | 1.54 | 12 | 2003-02-25 | ||||
| 4 | 1UB8|1|A+ 1UB8|1|B | 5'-D(*GP*CP*GP*AP*AP*GP*C)-3' | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-ray diffraction | 1.6 | 14 | 2004-03-09 | ||||
| 5 | 1UB8|1|E+ 1UB8|1|F | 5'-D(*GP*CP*GP*AP*AP*GP*C)-3' | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-ray diffraction | 1.6 | 14 | 2004-03-09 | ||||
| 6 | 1MF5|1|B | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT Quadruplex | X-ray diffraction | 1.1 | 7 | 2003-02-11 | ||||
| 7 | 1MF5|1|A | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT Quadruplex | X-ray diffraction | 1.1 | 7 | 2003-02-11 | ||||
| 8 | 2WBS|1|F+ 2WBS|1|G | 5'-D(*GP*AP*GP*GP*CP*GP*CP)-3', 5'-D(*GP*CP*GP*CP*CP*TP*CP)-3' | Mus musculus | Crystal structure of the zinc finger domain of Klf4 bound to its target DNA | X-ray diffraction | 1.7 | 14 | 2010-04-07 | |||
| 9 | 1UB8|1|C+ 1UB8|1|D | 5'-D(*GP*CP*GP*AP*AP*GP*C)-3' | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-ray diffraction | 1.6 | 14 | 2004-03-09 | ||||
| 10 | 2QHB|1|E+ 2QHB|1|F | 5'-D(P*CP*CP*CP*TP*AP*AP*A)-3', 5'-D(P*TP*TP*TP*AP*GP*GP*G)-3' | synthetic construct | Crystal structure of NgTRF complexed with telomeric DNA | X-ray diffraction | 2.4 | 14 | 2008-07-15 | |||
| 11 | 2QHB|1|C+ 2QHB|1|D | 5'-D(P*CP*CP*CP*TP*AP*AP*A)-3', 5'-D(P*TP*TP*TP*AP*GP*GP*G)-3' | synthetic construct | Crystal structure of NgTRF complexed with telomeric DNA | X-ray diffraction | 2.4 | 14 | 2008-07-15 | |||
| 12 | 1SFU|1|C+ 1SFU|1|D | 5'-D(*T*CP*GP*CP*GP*CP*G)-3' | Crystal structure of the viral Zalpha domain bound to left-handed Z-DNA | X-ray diffraction | 2 | 12 | 2004-08-17 | ||||
| 13 | 1S9B|1|A+ 1S9B|1|B | 5'-D(*GP*AP*AP*TP*TP*CP*G)-3' | Crystal Structure Analysis of the B-DNA GAATTCG | X-ray diffraction | 2.81 | 14 | 2004-09-07 | ||||
| 14 | 3E44|1|E+ 3E44|1|H | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DT)-3', 5'-D(P*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-ray diffraction | 2.52 | 14 | 2008-08-26 | ||||
| 15 | 3E44|1|F+ 3E44|1|G | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DT)-3', 5'-D(P*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-ray diffraction | 2.52 | 14 | 2008-08-26 | ||||
| 16 | 3NH1|1|E | 5'-D(*TP*TP*AP*TP*AP*GP*G)-3' | Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site | X-ray diffraction | 2.107 | 4 | 2011-02-16 | ||||
| 17 | 3NH1|1|F | 5'-D(*TP*TP*AP*TP*AP*GP*G)-3' | Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site | X-ray diffraction | 2.107 | 5 | 2011-02-16 | ||||
| 18 | 3NH1|1|G | 5'-D(*TP*TP*AP*TP*AP*GP*G)-3' | Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site | X-ray diffraction | 2.107 | 3 | 2011-02-16 | ||||
| 19 | 3NH1|1|H | 5'-D(*TP*TP*AP*TP*AP*GP*G)-3' | Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site | X-ray diffraction | 2.107 | 3 | 2011-02-16 | ||||
| 20 | 3NH2|1|D | 5'-D(P*TP*TP*AP*CP*AP*AP*C)-3' | synthetic construct | Crystal structure of RNase T in complex with a stem DNA with a 3' overhang | X-ray diffraction | 2.3 | 6 | 2011-02-16 | |||
| 21 | 3NH2|1|C | 5'-D(P*TP*TP*AP*CP*AP*AP*C)-3' | synthetic construct | Crystal structure of RNase T in complex with a stem DNA with a 3' overhang | X-ray diffraction | 2.3 | 7 | 2011-02-16 | |||
| 22 | 3NH2|1|H | 5'-D(P*TP*TP*AP*CP*AP*AP*C)-3' | synthetic construct | Crystal structure of RNase T in complex with a stem DNA with a 3' overhang | X-ray diffraction | 2.3 | 7 | 2011-02-16 | |||
| 23 | 2AXY|1|G | C-rich strand of human telomeric dna | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-ray diffraction | 1.7 | 6 | 2005-09-27 | ||||
| 24 | 3F21|1|D+ 3F21|1|E | DNA (5'-D(*DTP*DCP*DAP*DCP*DGP*DTP*DG)-3') | synthetic construct | Crystal structure of Zalpha in complex with d(CACGTG) | X-ray diffraction | 2.2 | 12 | 2008-12-30 | |||
| 25 | 3NH2|1|G | 5'-D(P*TP*TP*AP*CP*AP*AP*C)-3' | synthetic construct | Crystal structure of RNase T in complex with a stem DNA with a 3' overhang | X-ray diffraction | 2.3 | 6 | 2011-02-16 | |||
| 26 | 3F22|1|D+ 3F22|1|E | DNA (5'-D(*DTP*DCP*DGP*DTP*DAP*DCP*DG)-3') | synthetic construct | Crystal structure of Zalpha in complex with d(CGTACG) | X-ray diffraction | 2.5 | 12 | 2008-12-30 | |||
| 27 | 2AXY|1|E | C-rich strand of human telomeric dna | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-ray diffraction | 1.7 | 7 | 2005-09-27 | ||||
| 28 | 2AXY|1|F | C-rich strand of human telomeric dna | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-ray diffraction | 1.7 | 5 | 2005-09-27 | ||||
| 29 | 2P2R|1|B | C-rich strand of human telomeric DNA | Crystal structure of the third KH domain of human Poly(C)-Binding Protein-2 in complex with C-rich strand of human telomeric DNA | X-ray diffraction | 1.6 | 7 | 2007-06-12 | ||||
| 30 | 2KZZ|1|B | DNA (5'-D(*GP*CP*TP*T*AP*CP*G)-3') | KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY | X-ray diffraction | 2.25 | 3 | 1999-12-14 | ||||
| 31 | 3F22|1|F | DNA (5'-D(*DTP*DCP*DGP*DTP*DAP*DCP*DG)-3') | synthetic construct | Crystal structure of Zalpha in complex with d(CGTACG) | X-ray diffraction | 2.5 | 6 | 2008-12-30 | |||
| 32 | 3F21|1|F | DNA (5'-D(*DTP*DCP*DAP*DCP*DGP*DTP*DG)-3') | synthetic construct | Crystal structure of Zalpha in complex with d(CACGTG) | X-ray diffraction | 2.2 | 6 | 2008-12-30 | |||
| 33 | 2AXY|1|H | C-rich strand of human telomeric dna | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-ray diffraction | 1.7 | 5 | 2005-09-27 | ||||
| 34 | 3F23|1|D+ 3F23|1|E | DNA (5'-D(*DTP*DCP*DGP*DGP*DCP*DCP*DG)-3') | synthetic construct | Crystal structure of Zalpha in complex with d(CGGCCG) | X-ray diffraction | 2.7 | 12 | 2008-12-30 | |||
| 35 | 3F23|1|F | DNA (5'-D(*DTP*DCP*DGP*DGP*DCP*DCP*DG)-3') | synthetic construct | Crystal structure of Zalpha in complex with d(CGGCCG) | X-ray diffraction | 2.7 | 6 | 2008-12-30 | |||
| 36 | 3NH0|1|C | 5'-D(*TP*TP*AP*CP*AP*AP*C)-3' | Crystal structure of RNase T in complex with a non-preferred ssDNA (AAC) | X-ray diffraction | 2.3 | 3 | 2011-02-16 | ||||
| 37 | 3NH0|1|D | 5'-D(*TP*TP*AP*CP*AP*AP*C)-3' | Crystal structure of RNase T in complex with a non-preferred ssDNA (AAC) | X-ray diffraction | 2.3 | 3 | 2011-02-16 | ||||
| 38 | 2Z70|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DTP*DCP*DGP*DCP*DG)-3') | E.coli RNase 1 in complex with d(CGCGATCGCG) | X-ray diffraction | 1.7 | 4 | 2008-06-24 | ||||
| 39 | 3EYI|1|C+ 3EYI|1|D | 5'-TCGCGCG-3' | The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA | X-ray diffraction | 1.45 | 13 | 2009-01-13 | ||||
| 40 | 2KFN|1|B | 5'-D(*GP*CP*TP*TP*AP*(US1)P*G)-3' | KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE | X-ray diffraction | 2.03 | 4 | 1998-11-11 | ||||
| 41 | 1KFS|1|B | DNA (5'-D(*GP*CP*TP*TP*AP*CP*G)-3') | DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX | X-ray diffraction | 2.1 | 3 | 1998-02-25 | ||||
| 42 | 2KFZ|1|B | 5'-D(*GP*CP*TP*TP*AP*(US1)P*G)-3' | KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY | X-ray diffraction | 2.03 | 4 | 1998-11-11 | ||||
| 43 | 1R2O|1|X | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | d(GCATGCT) + Ni2+ | X-ray diffraction | 2.38 | 7 | 2003-10-21 | ||||
| 44 | 1QZL|1|X | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Cobalt | X-ray diffraction | 2.85 | 7 | 2003-10-21 | ||||
| 45 | 2NVT|1|N | 5'-D(*GP*TP*AP*CP*TP*TP*G)-3' | RNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPP | X-ray diffraction | 3.36 | 7 | 2006-12-12 | ||||
| 46 | 1Y1Y|1|T | 5'-D(P*TP*AP*CP*GP*CP*CP*T)-3' | RNA Polymerase II-TFIIS-DNA/RNA complex | X-ray diffraction | 4 | 7 | 2004-12-28 | ||||
| 47 | 1QYL|1|A | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Vanadium | X-ray diffraction | 1 | 7 | 2003-10-21 | ||||
| 48 | 313D|1|A+ 313D|1|B | DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*G)-3') | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE HOOGSTEEN BASE PAIR | X-ray diffraction | 1.68 | 14 | 1997-08-05 | ||||
| 49 | 9ICO|1|T+ 9ICO|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 | X-ray diffraction | 2.9 | 13 | 1995-12-16 | ||||
| 50 | 9ICK|1|T+ 9ICK|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR | X-ray diffraction | 2.7 | 13 | 1996-11-15 | ||||
| 51 | 7ICE|1|T+ 7ICE|1|P | DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), DNA (5'-D(P*CP*AP*GP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2 | X-ray diffraction | 2.8 | 13 | 1996-11-15 | ||||
| 52 | 7ICK|1|T+ 7ICK|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF MGCL2 | X-ray diffraction | 2.9 | 13 | 1996-04-19 | ||||
| 53 | 312D|1|A+ 312D|1|B | DNA (5'-D(*CP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3') | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WATSON-CRICK BASE PAIR | X-ray diffraction | 1.8 | 14 | 1997-08-28 | ||||
| 54 | 9ICS|1|T+ 9ICS|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 | X-ray diffraction | 2.9 | 13 | 1996-11-15 | ||||
| 55 | 9ICT|1|T+ 9ICT|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 | X-ray diffraction | 3 | 13 | 1996-11-15 | ||||
| 56 | 7ICQ|1|T+ 7ICQ|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 2.9 | 13 | 1996-04-19 | ||||
| 57 | 9ICR|1|T+ 9ICR|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 | X-ray diffraction | 3 | 13 | 1996-01-04 | ||||
| 58 | 184D|1|A | DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3') | SELF-ASSOCIATION OF A DNA LOOP CREATES A QUADRUPLEX: CRYSTAL STRUCTURE OF D(GCATGCT) AT 1.8 ANGSTROMS RESOLUTION | X-ray diffraction | 1.8 | 7 | 1995-07-10 | ||||
| 59 | 7ICG|1|T+ 7ICG|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CDCL2 | X-ray diffraction | 3 | 13 | 1996-04-19 | ||||
| 60 | 7ICM|1|T+ 7ICM|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) | X-ray diffraction | 3 | 13 | 1996-11-15 | ||||
| 61 | 7ICR|1|T+ 7ICR|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 3 | 13 | 1996-11-15 | ||||
| 62 | 9ICQ|1|T+ 9ICQ|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-ray diffraction | 2.9 | 13 | 1996-11-15 | ||||
| 63 | 9ICN|1|T+ 9ICN|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2 | X-ray diffraction | 3 | 13 | 1995-12-16 | ||||
| 64 | 7ICF|1|T+ 7ICF|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR-DAY SOAK) | X-ray diffraction | 3.1 | 13 | 1996-11-15 | ||||
| 65 | 9ICM|1|T+ 9ICM|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) | X-ray diffraction | 2.9 | 13 | 1996-11-15 | ||||
| 66 | 7ICP|1|T+ 7ICP|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) | X-ray diffraction | 3 | 13 | 1996-11-15 | ||||
| 67 | 9ICY|1|P+ 9ICY|1|T | DNA (5'-D(*CP*AP*TP*TP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY) | X-ray diffraction | 3 | 14 | 1996-11-15 | ||||
| 68 | 9ICU|1|T+ 9ICU|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-ray diffraction | 2.9 | 13 | 1996-11-15 | ||||
| 69 | 7ICI|1|T+ 7ICI|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) | X-ray diffraction | 2.8 | 13 | 1996-11-15 | ||||
| 70 | 7ICS|1|T+ 7ICS|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 2.8 | 13 | 1996-04-19 | ||||
| 71 | 9ICW|1|T+ 9ICW|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE | X-ray diffraction | 2.6 | 13 | 1996-11-15 | ||||
| 72 | 7ICL|1|T+ 7ICL|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) | X-ray diffraction | 3.1 | 13 | 1996-11-15 | ||||
| 73 | 9ICL|1|T+ 9ICL|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2 | X-ray diffraction | 2.8 | 13 | 1996-11-15 | ||||
| 74 | 7ICH|1|T+ 7ICH|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF COCL2 | X-ray diffraction | 2.9 | 13 | 1996-04-19 | ||||
| 75 | 7ICT|1|T+ 7ICT|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2 | X-ray diffraction | 2.8 | 13 | 1996-11-15 | ||||
| 76 | 314D|1|A+ 314D|1|B | DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WOBBLE BASE PAIR | X-ray diffraction | 1.9 | 14 | 1997-08-05 | ||||
| 77 | 7ICN|1|T+ 7ICN|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2 | X-ray diffraction | 2.8 | 13 | 1996-04-19 | ||||
| 78 | 3LLN|1|A+ 3LLN|1|B | DNA (5'-D(*CP*GP*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3') | Comparison between the orthorhombic an tetragonal form of the heptamer sequence d(GCG(xT)GCG)/d(CGCACGC). | X-ray diffraction | 3 | 14 | 2010-08-18 | ||||
| 79 | 2PY5|1|D | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 6 | 2007-07-17 | ||||
| 80 | 2PY5|1|E | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 6 | 2007-07-17 | ||||
| 81 | 2PY5|1|J | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 6 | 2007-07-17 | ||||
| 82 | 2PY5|1|Y | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 6 | 2007-07-17 | ||||
| 83 | 2HEO|1|B+ 2HEO|1|E | 5'-D(*TP*CP*GP*CP*GP*CP*G)-3' | General Structure-Based Approach to the Design of Protein Ligands: Application to the Design of Kv1.2 Potassium Channel Blockers. | X-ray diffraction | 1.7 | 12 | 2006-11-21 | ||||
| 84 | 2PY5|1|L | 5'-d(GGACTTT)-3' | Phi29 DNA polymerase complexed with single-stranded DNA | X-ray diffraction | 1.6 | 4 | 2007-07-17 | ||||
| 85 | 1J75|1|B | 5'-D(*TP*CP*GP*CP*GP*CP*G)-3' | Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA | X-ray diffraction | 1.85 | 7 | 2001-09-01 | ||||
| 86 | 1FIU|1|I+ 1FIU|1|J+ 1FIU|1|E+ 1FIU|1|F | DNA (5'-D(*TP*GP*CP*G)-3'), DNA (5'-D(P*CP*CP*GP*GP*CP*GP*C)-3') | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-ray diffraction | 1.6 | 22 | 2001-02-07 | ||||
| 87 | 1FIU|1|K+ 1FIU|1|L+ 1FIU|1|G+ 1FIU|1|H | DNA (5'-D(*TP*GP*CP*G)-3'), DNA (5'-D(P*CP*CP*GP*GP*CP*GP*C)-3') | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-ray diffraction | 1.6 | 22 | 2001-02-07 | ||||
| 88 | 1XHV|1|E+ 1XHV|1|I+ 1XHV|1|H+ 1XHV|1|L | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-ray diffraction | 2.5 | 26 | 2004-09-28 | ||||
| 89 | 1XHU|1|E+ 1XHU|1|I+ 1XHU|1|H+ 1XHU|1|L | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved, cognate DNA containing GTCGAC | X-ray diffraction | 2.95 | 26 | 2004-09-28 | ||||
| 90 | 331D|1|A+ 331D|1|B | DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF D(GCGCGCG) WITH 5'-OVERHANG G'S | X-ray diffraction | 1.65 | 14 | 1997-09-24 | ||||
| 91 | 1PUP|1|A+ 1PUP|1|B | PNA (H-P(*CPN*GPN*TPN*APN*CPN*GPN)-NH2) | CRYSTAL STRUCTURE OF A PEPTIDE NUCLEIC ACID (PNA) DUPLEX AT 1.7 ANGSTROMS RESOLUTION | X-ray diffraction | 1.7 | 12 | 1997-02-25 | ||||
| 92 | 1QBJ|1|D+ 1QBJ|1|E | DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-ray diffraction | 2.1 | 12 | 1999-07-02 | ||||
| 93 | 1QYK|1|A | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Barium | X-ray diffraction | 1.4 | 7 | 2003-10-21 | ||||
| 94 | 1QYK|1|B | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Barium | X-ray diffraction | 1.4 | 7 | 2003-10-21 | ||||
| 95 | 1XHV|1|G+ 1XHV|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-ray diffraction | 2.5 | 13 | 2004-09-28 | ||||
| 96 | 2BZF|1|B+ 2BZF|1|C | 5'-D(*CP*CP*TP*CP*CP*AP*CP)-3', 5'-D(*GP*TP*GP*GP*AP*GP*GP)-3' | Structural basis for DNA bridging by barrier-to-autointegration factor (BAF) | X-ray diffraction | 2.87 | 14 | 2005-09-15 | ||||
| 97 | 1XHV|1|K+ 1XHV|1|J | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-ray diffraction | 2.5 | 13 | 2004-09-28 | ||||
| 98 | 1XHU|1|G+ 1XHU|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved, cognate DNA containing GTCGAC | X-ray diffraction | 2.95 | 13 | 2004-09-28 | ||||
| 99 | 1XHU|1|K+ 1XHU|1|J | 5'-D(*GP*CP*CP*GP*GP*TP*C)-3', 5'-D(P*GP*AP*CP*CP*GP*G)-3' | HincII bound to cleaved, cognate DNA containing GTCGAC | X-ray diffraction | 2.95 | 13 | 2004-09-28 | ||||
| 100 | 1QBJ|1|F | DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-ray diffraction | 2.1 | 6 | 1999-07-02 | ||||
| 101 | 7ICU|1|T+ 7ICU|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) | X-ray diffraction | 3.3 | 13 | 1996-11-15 | ||||
| 102 | 9ICP|1|T+ 9ICP|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) | X-ray diffraction | 3.1 | 13 | 1996-11-15 | ||||
| 103 | 7ICV|1|T+ 7ICV|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND IN THE ABSENCE OF NACL | X-ray diffraction | 2.8 | 13 | 1996-11-15 | ||||
| 104 | 7ICO|1|T+ 7ICO|1|P | DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3') | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-ray diffraction | 3.3 | 13 | 1996-04-19 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2011-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1MF5|1|B | GCATGCT Quadruplex | X-RAY DIFFRACTION | 1.1 | 7 | quadruplex,structure | ||
| 2 | 1QYK|1|A | GCATGCT + Barium | X-RAY DIFFRACTION | 1.4 | 7 | quadruplex,structure | ||
| 3 | 1QYK|1|B | GCATGCT + Barium | X-RAY DIFFRACTION | 1.4 | 7 | quadruplex,structure | ||
| 4 | 1MF5|1|A | GCATGCT Quadruplex | X-RAY DIFFRACTION | 1.1 | 7 | quadruplex,structure | ||
| 5 | 184D|1|A | SELF-ASSOCIATION OF A DNA LOOP CREATES A QUADRUPLEX: CRYSTAL STRUCTURE OF D(GCATGCT) AT 1.8 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 1.8 | 7 | quadruplex,structure | ||
| 6 | 1QYL|1|A | GCATGCT + Vanadium | X-RAY DIFFRACTION | 1 | 7 | quadruplex,structure | ||
| 7 | 3NH1|1|F | Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site | X-RAY DIFFRACTION | 2.107 | 5 | enzyme,hydrolase,nuclease | ||
| 8 | 3NH1|1|E | Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site | X-RAY DIFFRACTION | 2.107 | 4 | enzyme,hydrolase,nuclease | ||
| 9 | 3NH1|1|H | Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site | X-RAY DIFFRACTION | 2.107 | 3 | enzyme,hydrolase,nuclease | ||
| 10 | 3NH1|1|G | Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site | X-RAY DIFFRACTION | 2.107 | 3 | enzyme,hydrolase,nuclease | ||
| 11 | 3NH0|1|D | Crystal structure of RNase T in complex with a non-preferred ssDNA (AAC) | X-RAY DIFFRACTION | 2.3 | 3 | enzyme,hydrolase,nuclease | ||
| 12 | 3NH0|1|C | Crystal structure of RNase T in complex with a non-preferred ssDNA (AAC) | X-RAY DIFFRACTION | 2.3 | 3 | enzyme,hydrolase,nuclease | ||
| 13 | 3NH2|1|G | Crystal structure of RNase T in complex with a stem DNA with a 3' overhang | X-RAY DIFFRACTION | 2.3 | 6 | enzyme,hydrolase,nuclease | ||
| 14 | 3NH2|1|H | Crystal structure of RNase T in complex with a stem DNA with a 3' overhang | X-RAY DIFFRACTION | 2.3 | 7 | enzyme,hydrolase,nuclease | ||
| 15 | 3NH2|1|D | Crystal structure of RNase T in complex with a stem DNA with a 3' overhang | X-RAY DIFFRACTION | 2.3 | 6 | enzyme,hydrolase,nuclease | ||
| 16 | 3NH2|1|C | Crystal structure of RNase T in complex with a stem DNA with a 3' overhang | X-RAY DIFFRACTION | 2.3 | 7 | enzyme,hydrolase,nuclease | ||
| 17 | 2P2R|1|B | Crystal structure of the third KH domain of human Poly(C)-Binding Protein-2 in complex with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.6 | 7 | post-transcriptional,regulatory | ||
| 18 | 1KFS|1|B | DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 3 | enzyme,polymerase,transferase | ||
| 19 | 2KFN|1|B | KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE | X-RAY DIFFRACTION | 2.03 | 4 | enzyme,polymerase,transferase | ||
| 20 | 2KFZ|1|B | KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY | X-RAY DIFFRACTION | 2.03 | 4 | enzyme,polymerase,transferase | ||
| 21 | 2PY5|1|L | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 4 | enzyme,polymerase,transferase | ||
| 22 | 1QZL|1|X | GCATGCT + Cobalt | X-RAY DIFFRACTION | 2.85 | 7 | quadruplex,structure | ||
| 23 | 1R2O|1|X | d(GCATGCT) + Ni2+ | X-RAY DIFFRACTION | 2.38 | 7 | quadruplex,structure | ||
| 24 | 2PY5|1|E | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 6 | enzyme,polymerase,transferase | ||
| 25 | 2PY5|1|D | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 6 | enzyme,polymerase,transferase | ||
| 26 | 1UB8|1|E+ 1UB8|1|F | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-RAY DIFFRACTION | 1.6 | 14 | double helix,feature,mispair,structure | ||
| 27 | 1UB8|1|C+ 1UB8|1|D | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-RAY DIFFRACTION | 1.6 | 14 | double helix,feature,mispair,structure | ||
| 28 | 1UB8|1|A+ 1UB8|1|B | Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue | X-RAY DIFFRACTION | 1.6 | 14 | double helix,feature,mispair,structure | ||
| 29 | 2WBS|1|F+ 2WBS|1|G | Crystal structure of the zinc finger domain of Klf4 bound to its target DNA | X-RAY DIFFRACTION | 1.7 | 14 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 30 | 2QHB|1|E+ 2QHB|1|F | Crystal structure of NgTRF complexed with telomeric DNA | X-RAY DIFFRACTION | 2.4 | 14 | B-form double helix,double helix,structure | chromatin,structural,telomere | |
| 31 | 2QHB|1|C+ 2QHB|1|D | Crystal structure of NgTRF complexed with telomeric DNA | X-RAY DIFFRACTION | 2.4 | 14 | B-form double helix,double helix,structure | chromatin,structural,telomere | |
| 32 | 2BZF|1|B+ 2BZF|1|C | Structural basis for DNA bridging by barrier-to-autointegration factor (BAF) | X-RAY DIFFRACTION | 2.87 | 14 | chromatin,nucleosome,structural | ||
| 33 | 9ICY|1|P+ 9ICY|1|T | DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY) | X-RAY DIFFRACTION | 3 | 14 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 34 | 9ICP|1|T+ 9ICP|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) | X-RAY DIFFRACTION | 3.1 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 35 | 1S9B|1|A+ 1S9B|1|B | Crystal Structure Analysis of the B-DNA GAATTCG | X-RAY DIFFRACTION | 2.81 | 14 | B-form double helix,double helix,structure | ||
| 36 | 7ICF|1|T+ 7ICF|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR-DAY SOAK) | X-RAY DIFFRACTION | 3.1 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 37 | 7ICU|1|T+ 7ICU|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) | X-RAY DIFFRACTION | 3.3 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 38 | 7ICL|1|T+ 7ICL|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) | X-RAY DIFFRACTION | 3.1 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 39 | 7ICO|1|T+ 7ICO|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 3.3 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 40 | 7ICR|1|T+ 7ICR|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 3 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 41 | 7ICS|1|T+ 7ICS|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 2.8 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 42 | 9ICU|1|T+ 9ICU|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-RAY DIFFRACTION | 2.9 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 43 | 9ICT|1|T+ 9ICT|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 | X-RAY DIFFRACTION | 3 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 44 | 9ICR|1|T+ 9ICR|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 | X-RAY DIFFRACTION | 3 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 45 | 9ICW|1|T+ 9ICW|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE | X-RAY DIFFRACTION | 2.6 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 46 | 9ICL|1|T+ 9ICL|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2 | X-RAY DIFFRACTION | 2.8 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 47 | 7ICI|1|T+ 7ICI|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) | X-RAY DIFFRACTION | 2.8 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 48 | 7ICP|1|T+ 7ICP|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) | X-RAY DIFFRACTION | 3 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 49 | 7ICH|1|T+ 7ICH|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF COCL2 | X-RAY DIFFRACTION | 2.9 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 50 | 7ICT|1|T+ 7ICT|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2 | X-RAY DIFFRACTION | 2.8 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 51 | 9ICS|1|T+ 9ICS|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 | X-RAY DIFFRACTION | 2.9 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 52 | 9ICO|1|T+ 9ICO|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 | X-RAY DIFFRACTION | 2.9 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 53 | 7ICM|1|T+ 7ICM|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) | X-RAY DIFFRACTION | 3 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 54 | 9ICQ|1|T+ 9ICQ|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) | X-RAY DIFFRACTION | 2.9 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 55 | 9ICK|1|T+ 9ICK|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR | X-RAY DIFFRACTION | 2.7 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 56 | 7ICK|1|T+ 7ICK|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF MGCL2 | X-RAY DIFFRACTION | 2.9 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 57 | 7ICV|1|T+ 7ICV|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND IN THE ABSENCE OF NACL | X-RAY DIFFRACTION | 2.8 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 58 | 9ICN|1|T+ 9ICN|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2 | X-RAY DIFFRACTION | 3 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 59 | 7ICN|1|T+ 7ICN|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2 | X-RAY DIFFRACTION | 2.8 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 60 | 7ICG|1|T+ 7ICG|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CDCL2 | X-RAY DIFFRACTION | 3 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 61 | 7ICQ|1|T+ 7ICQ|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 | X-RAY DIFFRACTION | 2.9 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 62 | 7ICE|1|T+ 7ICE|1|P | DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2 | X-RAY DIFFRACTION | 2.8 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 63 | 9ICM|1|T+ 9ICM|1|P | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) | X-RAY DIFFRACTION | 2.9 | 13 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 64 | 3FL6|1|C+ 3FL6|1|D | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-RAY DIFFRACTION | 1.17 | 14 | B-form double helix,double helix,structure | ||
| 65 | 3LLN|1|A+ 3LLN|1|B | Comparison between the orthorhombic an tetragonal form of the heptamer sequence d(GCG(xT)GCG)/d(CGCACGC). | X-RAY DIFFRACTION | 3 | 14 | double helix,structure | ||
| 66 | 3E44|1|F+ 3E44|1|G | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-RAY DIFFRACTION | 2.52 | 14 | double helix,structure | enzyme,hydrolase,nuclease | |
| 67 | 1FIU|1|I+ 1FIU|1|J+ 1FIU|1|E+ 1FIU|1|F | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-RAY DIFFRACTION | 1.6 | 22 | enzyme,hydrolase,nuclease | ||
| 68 | 1XHU|1|K+ 1XHU|1|J | HincII bound to cleaved, cognate DNA containing GTCGAC | X-RAY DIFFRACTION | 2.95 | 13 | enzyme,hydrolase,nuclease | ||
| 69 | 1XHV|1|K+ 1XHV|1|J | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-RAY DIFFRACTION | 2.5 | 13 | enzyme,hydrolase,nuclease | ||
| 70 | 1XHV|1|G+ 1XHV|1|F | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-RAY DIFFRACTION | 2.5 | 13 | enzyme,hydrolase,nuclease | ||
| 71 | 1XHU|1|G+ 1XHU|1|F | HincII bound to cleaved, cognate DNA containing GTCGAC | X-RAY DIFFRACTION | 2.95 | 13 | enzyme,hydrolase,nuclease | ||
| 72 | 1XHU|1|E+ 1XHU|1|I+ 1XHU|1|H+ 1XHU|1|L | HincII bound to cleaved, cognate DNA containing GTCGAC | X-RAY DIFFRACTION | 2.95 | 26 | enzyme,hydrolase,nuclease | ||
| 73 | 1XHV|1|E+ 1XHV|1|I+ 1XHV|1|H+ 1XHV|1|L | HincII bound to cleaved cognate DNA GTCGAC and Mn2+ | X-RAY DIFFRACTION | 2.5 | 26 | enzyme,hydrolase,nuclease | ||
| 74 | 3E44|1|E+ 3E44|1|H | Q138F HincII bound to cleaved DNA (GTT | AAC) and Mn2+ | X-RAY DIFFRACTION | 2.52 | 14 | double helix,structure | enzyme,hydrolase,nuclease | |
| 75 | 1FIU|1|K+ 1FIU|1|L+ 1FIU|1|G+ 1FIU|1|H | TETRAMERIC RESTRICTION ENDONUCLEASE NGOMIV IN COMPLEX WITH CLEAVED DNA | X-RAY DIFFRACTION | 1.6 | 22 | enzyme,hydrolase,nuclease | ||
| 76 | 2AXY|1|F | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.7 | 5 | post-transcriptional,regulatory | ||
| 77 | 2AXY|1|G | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.7 | 6 | post-transcriptional,regulatory | ||
| 78 | 2AXY|1|H | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.7 | 5 | post-transcriptional,regulatory | ||
| 79 | 2AXY|1|E | Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA | X-RAY DIFFRACTION | 1.7 | 7 | post-transcriptional,regulatory | ||
| 80 | 2PY5|1|Y | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 6 | enzyme,polymerase,transferase | ||
| 81 | 2PY5|1|J | Phi29 DNA polymerase complexed with single-stranded DNA | X-RAY DIFFRACTION | 1.6 | 6 | enzyme,polymerase,transferase | ||
| 82 | 3EYI|1|C+ 3EYI|1|D | The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA | X-RAY DIFFRACTION | 1.45 | 13 | Z-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 83 | 314D|1|A+ 314D|1|B | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WOBBLE BASE PAIR | X-RAY DIFFRACTION | 1.9 | 14 | Z-form double helix,double helix,structure | ||
| 84 | 331D|1|A+ 331D|1|B | CRYSTAL STRUCTURE OF D(GCGCGCG) WITH 5'-OVERHANG G'S | X-RAY DIFFRACTION | 1.65 | 14 | Z-form double helix,double helix,structure | ||
| 85 | 313D|1|A+ 313D|1|B | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE HOOGSTEEN BASE PAIR | X-RAY DIFFRACTION | 1.68 | 14 | Z-form double helix,double helix,structure | ||
| 86 | 312D|1|A+ 312D|1|B | Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WATSON-CRICK BASE PAIR | X-RAY DIFFRACTION | 1.8 | 14 | Z-form double helix,double helix,structure | ||
| 87 | 3F23|1|D+ 3F23|1|E | Crystal structure of Zalpha in complex with d(CGGCCG) | X-RAY DIFFRACTION | 2.7 | 12 | Z-form double helix,double helix,structure | enzyme,hydrolase | |
| 88 | 3F22|1|D+ 3F22|1|E | Crystal structure of Zalpha in complex with d(CGTACG) | X-RAY DIFFRACTION | 2.5 | 12 | Z-form double helix,double helix,structure | enzyme,hydrolase | |
| 89 | 1M6R|1|A+ 1M6R|1|B | Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang | X-RAY DIFFRACTION | 1.54 | 12 | Z-form double helix,double helix,structure | ||
| 90 | 1SFU|1|C+ 1SFU|1|D | Crystal structure of the viral Zalpha domain bound to left-handed Z-DNA | X-RAY DIFFRACTION | 2 | 12 | Z-form double helix,double helix,structure | enzyme,hydrolase | |
| 91 | 3F22|1|F | Crystal structure of Zalpha in complex with d(CGTACG) | X-RAY DIFFRACTION | 2.5 | 6 | Z-form double helix,double helix,structure | enzyme,hydrolase | |
| 92 | 3F23|1|F | Crystal structure of Zalpha in complex with d(CGGCCG) | X-RAY DIFFRACTION | 2.7 | 6 | Z-form double helix,double helix,structure | enzyme,hydrolase | |
| 93 | 1QBJ|1|D+ 1QBJ|1|E | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 12 | Z-form double helix,double helix,structure | enzyme,hydrolase | |
| 94 | 1QBJ|1|F | CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 6 | Z-form double helix,double helix,structure | enzyme,hydrolase | |
| 95 | 3F21|1|F | Crystal structure of Zalpha in complex with d(CACGTG) | X-RAY DIFFRACTION | 2.2 | 6 | Z-form double helix,double helix,structure | enzyme,hydrolase | |
| 96 | 3F21|1|D+ 3F21|1|E | Crystal structure of Zalpha in complex with d(CACGTG) | X-RAY DIFFRACTION | 2.2 | 12 | Z-form double helix,double helix,structure | enzyme,hydrolase | |
| 97 | 2HEO|1|B+ 2HEO|1|E | General Structure-Based Approach to the Design of Protein Ligands: Application to the Design of Kv1.2 Potassium Channel Blockers. | X-RAY DIFFRACTION | 1.7 | 12 | Z-form double helix,double helix,structure | cell cycle,regulatory | |
| 98 | 1J75|1|B | Crystal Structure of the DNA-Binding Domain Zalpha of DLM-1 Bound to Z-DNA | X-RAY DIFFRACTION | 1.85 | 7 | Z-form double helix,double helix,structure | cell cycle,regulatory | |
| 99 | 3FL6|1|A+ 3FL6|1|B | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-RAY DIFFRACTION | 1.17 | 14 | B-form double helix,double helix,structure | ||
| 100 | 2NVT|1|N | RNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPP | X-RAY DIFFRACTION | 3.36 | 7 | enzyme,polymerase,transferase | ||
| 101 | 2Z70|1|B | E.coli RNase 1 in complex with d(CGCGATCGCG) | X-RAY DIFFRACTION | 1.7 | 4 | enzyme,hydrolase,nuclease | ||
| 102 | 1PUP|1|A+ 1PUP|1|B | CRYSTAL STRUCTURE OF A PEPTIDE NUCLEIC ACID (PNA) DUPLEX AT 1.7 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 1.7 | 12 | NAKB_NA_annotation | NAKB_protein_annotation | |
| 103 | 2KZZ|1|B | KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY | X-RAY DIFFRACTION | 2.25 | 3 | enzyme,polymerase,transferase | ||
| 104 | 1Y1Y|1|T | RNA Polymerase II-TFIIS-DNA/RNA complex | X-RAY DIFFRACTION | 4 | 7 | enzyme,polymerase,regulatory,transcription,transferase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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