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Equivalence class DNA_all_03402.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13BSE|1|A+ 3BSE|1|B (rep)DNA (5'-D(*DA*DCP*DAP*DCP*DTP*DAP*DCP*DAP*DAP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DAP*DT)-3'), DNA (5'-D(*DG*DTP*DAP*DTP*DTP*DGP*DCP*DAP*DAP*DCP*DAP*DTP*DTP*DGP*DTP*DAP*DGP*DT)-3')Crystal structure analysis of a 16-base-pair B-DNAX-ray diffraction1.6342008-12-23
23NCI|1|T+ 3NCI|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolutionX-ray diffraction1.79312011-02-02
32W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|H5'-D(*AP*AP*TP*GP*TP*TP*TP*AP*GP*CP *TP*AP*AP*AP*CP*AP*AP*G)-3', 5'-D(*CP*BRUP*BRUP*GP*TP*TP*TP*AP*GP*CP*TP*AP *AP*AP*CP*AP*BRUP*T)-3'Escherichia coliCrystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene RegulationX-ray diffraction1.85722009-02-17
41JX4|1|T+ 1JX4|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*TP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming NucleotideX-ray diffraction1.7302001-10-05
53K57|1|T+ 3K57|1|PDNA (5'-D(*G*TP*AP*TP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3')Crystal structure of E.coli Pol II-normal DNA-dATP ternary complexX-ray diffraction2.08302010-02-09
63NGI|1|T+ 3NGI|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dGX-ray diffraction1.886312011-01-26
71S9F|1|I+ 1S9F|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
81S9F|1|J+ 1S9F|1|F5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
91S9F|1|K+ 1S9F|1|G5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
101S9F|1|L+ 1S9F|1|H5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
112OG0|1|C+ 2OG0|1|D5'-D(*AP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*TP*AP*TP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*T)-3'Crystal Structure of the Lambda Xis-DNA complexX-ray diffraction1.9362007-03-13
123NDK|1|T+ 3NDK|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dGX-ray diffraction2312011-01-26
133NAE|1|T+ 3NAE|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*(G35)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite GuanidinohydantoinX-ray diffraction2.003312010-09-15
143NE6|1|T+ 3NE6|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dGX-ray diffraction2.001312011-01-26
153CFP|1|T+ 3CFP|1|PDNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*(DOC))-3')Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1X-ray diffraction2.5322009-03-10
162JEJ|1|T+ 2JEJ|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*CP*G)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction1.86332007-03-13
171WB9|1|E+ 1WB9|1|F5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3'Crystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatchX-ray diffraction2.1352006-01-18
181RYS|1|D+ 1RYS|1|C5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3', 5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-ray diffraction2.03312004-02-10
191RYS|1|F+ 1RYS|1|E5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3', 5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-ray diffraction2.03312004-02-10
203DW9|1|E+ 3DW9|1|FDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')SgrAI with cognate DNA and manganese boundX-ray diffraction2.2362008-08-19
213DVO|1|E+ 3DVO|1|FDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')synthetic constructSgrAI with cognate DNA and calcium boundX-ray diffraction1.892362008-08-19
223DVO|1|G+ 3DVO|1|HDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')synthetic constructSgrAI with cognate DNA and calcium boundX-ray diffraction1.892362008-08-19
232XC9|1|T+ 2XC9|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*G)-3', 5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP*TP*TP* CP*CP*CP*CP*C)-3'synthetic constructBINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORMX-ray diffraction2.2312010-09-08
243M9N|1|T+ 3M9N|1|PDNA (5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*GP*C)-3'), DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')synthetic constructCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-ray diffraction1.93282010-06-16
253L8B|1|C+ 3L8B|1|DDNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3')Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-ray diffraction2.15292010-03-09
263L8B|1|E+ 3L8B|1|FDNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3')Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-ray diffraction2.15292010-03-09
272BQ3|1|T+ 2BQ3|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2312005-06-22
282UVW|1|T+ 2UVW|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.09312007-05-08
293OSN|1|B+ 3OSN|1|C5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase IotaX-ray diffraction1.9152010-10-20
302P5L|1|A+ 2P5L|1|BDNA (5'-D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DG)-3')Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-ray diffraction2.85362008-03-11
312P5L|1|E+ 2P5L|1|FDNA (5'-D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DG)-3')Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-ray diffraction2.85352008-03-11
322BQU|1|T+ 2BQU|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2.5302005-06-23
332W9B|1|E+ 2W9B|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3', 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-ray diffraction2.28302009-05-12
342W9B|1|F+ 2W9B|1|D5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3', 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-ray diffraction2.28302009-05-12
352UVV|1|T+ 2UVV|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.2302007-05-08
362C28|1|T+ 2C28|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.27302005-11-29
372BQR|1|T+ 2BQR|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2.37302005-06-23
383NHG|1|T+ 3NHG|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dGX-ray diffraction2.5312011-01-26
391B3T|1|C+ 1B3T|1|DDNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*AP*TP*AP*TP*GP*CP*TP*TP*CP*CP*C)-3')EBNA-1 NUCLEAR PROTEIN/DNA COMPLEXX-ray diffraction2.2361998-12-15
402BR0|1|T+ 2BR0|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2.17302005-06-23
413K5L|1|T+ 3K5L|1|PDNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*AP*TP*(3DR)P*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3')Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complexX-ray diffraction2.7312010-02-02
423LZI|1|T+ 3LZI|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanineX-ray diffraction2.3312010-05-12
433GIJ|1|E+ 3GIJ|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-ray diffraction2.4312009-05-19
443GIJ|1|J+ 3GIJ|1|H5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-ray diffraction2.4272009-05-19
452JEF|1|T+ 2JEF|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*BZGP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP CP*CP*C)-3'The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect PairingX-ray diffraction2.17302007-03-13
462W9A|1|T+ 2W9A|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTPX-ray diffraction2.6302009-05-12
472XCA|1|T+ 2XCA|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP*TP*CP* CP*CP*CP*C)-3'synthetic constructTERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORMX-ray diffraction2.5302010-09-08
482JEG|1|T+ 2JEG|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction2.38312007-03-13
492JEI|1|T+ 2JEI|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction2.39302007-03-13
502J6U|1|T+ 2J6U|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3', 5'-D(*TP*CP*AP*C G32P*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'synthetic constructTernary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP.X-ray diffraction2.5312006-11-22
512R8I|1|T+ 2R8I|1|PDNA (5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DC)-3'), DNA (5'-D(*DTP*DCP*DAP*DTP*(P)P*DGP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3')Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-ray diffraction2.38312008-07-22
521S97|1|I+ 1S97|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO4 with GT mismatchX-ray diffraction2.4302004-04-27
531S97|1|J+ 1S97|1|F5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO4 with GT mismatchX-ray diffraction2.4302004-04-27
541S97|1|K+ 1S97|1|G5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO4 with GT mismatchX-ray diffraction2.4302004-04-27
551S97|1|L+ 1S97|1|H5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO4 with GT mismatchX-ray diffraction2.4302004-04-27
561WBD|1|E+ 1WBD|1|F5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3'Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatchX-ray diffraction2.4352006-01-18
572DTU|1|E+ 2DTU|1|F5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.37332006-12-05
582DTU|1|G+ 2DTU|1|H5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.37332006-12-05
592DTU|1|I+ 2DTU|1|J5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.37332006-12-05
602DTU|1|K+ 2DTU|1|L5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.37332006-12-05
611IG9|1|T+ 1IG9|1|P5'-D(*AP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*(DOC))-3'Structure of the Replicating Complex of a Pol Alpha Family DNA PolymeraseX-ray diffraction2.6322001-06-11
622V4Q|1|T+ 2V4Q|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*C M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'POST-INSERTION COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH M1DG CONTAINING TEMPLATE DNAX-ray diffraction2.6312009-06-16
632C22|1|T+ 2C22|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.56302005-11-29
642BNZ|1|E+ 2BNZ|1|F5'-D(*CP*TP*AP*AP*TP*CP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*GP*AP*TP*TP*AP*GP*C)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-ray diffraction2.6352006-03-15
652BNZ|1|H5'-D(*CP*TP*AP*AP*TP*CP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-ray diffraction2.652006-03-15
663EPI|1|B+ 3EPI|1|C5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3'Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTPX-ray diffraction2.9152008-12-16
671R0O|1|C+ 1R0O|1|DEcdysone Response ElementCrystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding ComplexX-ray diffraction2.24362003-10-21
682J6T|1|T+ 2J6T|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-ray diffraction2.6302006-11-22
692VA2|1|D+ 2VA2|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction2.8292007-10-30
702VA2|1|F+ 2VA2|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction2.8312007-10-30
712XCP|1|F+ 2XCP|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-ray diffraction2.6312010-09-08
722XCP|1|T+ 2XCP|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-ray diffraction2.6312010-09-08
732BNW|1|E+ 2BNW|1|F5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-ray diffraction2.45362006-03-15
742BNW|1|G+ 2BNW|1|H5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-ray diffraction2.45362006-03-15
753CFR|1|T+ 3CFR|1|PDNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*(DOC))-3'), DNA (5'-D(*DTP*DCP*DAP*DAP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3')Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2X-ray diffraction2.4312009-03-10
761WBB|1|E+ 1WBB|1|F5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3'Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatchX-ray diffraction2.5352006-01-18
772CAX|1|U+ 2CAX|1|Y5'-D(*CP*TP*TP*GP*TP*GP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*CP*AP*CP*AP*AP*GP*C)-3'STRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX REPRESSOR OMEGA TO MUTATED DIRECT DNA HEPTAD REPEATSX-ray diffraction2.9362006-03-15
782UVU|1|T+ 2UVU|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.7312007-05-08
793GIL|1|E+ 3GIL|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3'Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-ray diffraction2.71312009-05-19
803GIL|1|J+ 3GIL|1|H5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3'Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-ray diffraction2.71292009-05-19
812R8H|1|T+ 2R8H|1|PDNA (5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DC)-3'), DNA (5'-D(*DTP*DCP*DAP*DCP*(P)P*DGP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3')Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-ray diffraction2.48312008-07-22
823MKW|1|T+ 3MKW|1|UDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of sopB(155-272)-18mer complex, I23 formX-ray diffraction2.99362010-05-05
831P8K|1|A+ 1P8K|1|C+ 1P8K|1|D+ 1P8K|1|B5'-D(P*CP*CP*TP*CP*CP*TP*CP*AP*GP*CP*GP*CP*GP*CP*T)-3', 5'-D(P*GP*CP*GP*CP*GP*CP*TP*GP*AP*GP*GP*AP*GP*GP*TP*TP*TP*C)-3', 5'-D(P*GP*CP*GP*CP*TP*TP*TP*AP*CP*AP*GP*AP*GP*AP*AP*A)-3', 5'-D(P*TP*CP*TP*GP*TP*AP*AP*AP*GP*CP*GP*CP*A)-3'The structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factorX-ray diffraction2.6622004-01-20
842J6S|1|T+ 2J6S|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-ray diffraction2.5302006-11-22
853CQ8|1|T+ 3CQ8|1|PDNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*DC)-3')Ternary complex of the L415F mutant RB69 exo(-)polymeraseX-ray diffraction2.5322008-09-02
862OZS|1|T+ 2OZS|1|PPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMPX-ray diffraction2.75322007-10-23
872C2D|1|T+ 2C2D|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'synthetic constructEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.57282005-11-29
883GIM|1|E+ 3GIM|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3'Dpo4 extension ternary complex with oxoG(anti)-G(syn) pairX-ray diffraction2.7312009-05-19
893EPG|1|B+ 3EPG|1|C5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3'Structure of Human DNA Polymerase Iota complexed with N2-ethylguanineX-ray diffraction2.5152008-12-16
902V4R|1|T+ 2V4R|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(*TP*CP*AP*CP*M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'synthetic constructNon-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosineX-ray diffraction2.5302009-06-16
912IVH|1|B+ 2IVH|1|C5'-D(*GP*GP*AP*AP*TP*TP*CP*GP*AP*TP *CP*GP*AP*AP*TP*TP*CP*C)-3'Escherichia coliCrystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNAX-ray diffraction2.8362007-01-02
921KB6|1|C+ 1KB6|1|D5'-D(*CP*AP*CP*GP*GP*GP*TP*GP*AP*AP*TP*GP*AP*GP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*CP*TP*CP*AP*TP*TP*CP*AP*CP*CP*CP*GP*TP*G)-3'Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response ElementX-ray diffraction2.7362002-05-03
931Q9X|1|E+ 1Q9X|1|I5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3', 5'-GCGGACTGCTTAC(dideoxycytidine)-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.69312004-04-27
941Q9X|1|F+ 1Q9X|1|J5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3', 5'-GCGGACTGCTTAC(dideoxycytidine)-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.69312004-04-27
951Q9X|1|G+ 1Q9X|1|K5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3', 5'-GCGGACTGCTTAC(dideoxycytidine)-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.69312004-04-27
961Q9X|1|H+ 1Q9X|1|L5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3', 5'-GCGGACTGCTTAC(dideoxycytidine)-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.69312004-04-27
972VA3|1|T+ 2VA3|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3', 5'-D(*TP*TP*CP*AP*DFTP*TP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction2.98292007-10-30
983LZJ|1|T+ 3LZJ|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanineX-ray diffraction2.05312010-05-19
991Q9Y|1|T+ 1Q9Y|1|P5'-AC(8-OXOGUANOSINE)GGTAAGCAGTCCGCG-3', 5'-GCGGACTGCTTAC(DIDEOXYCYTIDINE)-3'CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNAX-ray diffraction2.8322004-04-27
1003MKY|1|T+ 3MKY|1|UDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of SopB(155-323)-18mer DNA complex, I23 formX-ray diffraction2.86362010-05-05
1013FBD|1|B+ 3FBD|1|C5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3'Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-ray diffraction2.9362009-11-03
1023FBD|1|E+ 3FBD|1|F5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3'Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-ray diffraction2.9362009-11-03
1032UVR|1|T+ 2UVR|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.9312007-05-08
1041KB4|1|C+ 1KB4|1|D5'-D(*CP*AP*CP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*A)-3', 5'-D(*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*GP*TP*G)-3'Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response ElementX-ray diffraction2.8362002-05-03
1052DY4|1|G+ 2DY4|1|H5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.65332007-01-09
1062DY4|1|I+ 2DY4|1|J5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.65332007-01-09
1072DY4|1|K+ 2DY4|1|L5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.65332007-01-09
1082F8X|1|X+ 2F8X|1|Y5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A)-3', 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C)-3'Crystal structure of activated Notch, CSL and MAML on HES-1 promoter DNA sequenceX-ray diffraction3.25362006-04-04
1092NL8|1|W18-nt PEN element of the SV40 DNA originThe origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)X-ray diffraction2.3182006-12-12
1101S0N|1|T+ 1S0N|1|P5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*CP*G)-3', 5'-D(*TP*AP*CP*GP*AP*CP*GP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3'Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-ray diffraction2.8312004-03-30
1112OZM|1|T+ 2OZM|1|PPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analogX-ray diffraction2.86322007-10-23
1123MKZ|1|C+ 3MKZ|1|DDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of SopB(155-272)-18mer complex, P21 formX-ray diffraction2.98362010-05-05
1133MKZ|1|Y+ 3MKZ|1|ZDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of SopB(155-272)-18mer complex, P21 formX-ray diffraction2.98362010-05-05
1141R0N|1|C+ 1R0N|1|DEcdsyone Response Element, Ecdysone Response ElementCrystal Structure of Heterodimeric Ecdsyone receptor DNA binding complexX-ray diffraction2.6362003-10-21
1151R4I|1|C+ 1R4I|1|D5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*AP*AP*GP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*TP*CP*TP*TP*GP*AP*TP*GP*TP*TP*CP*TP*GP*G)-3'Crystal Structure of Androgen Receptor DNA-Binding Domain Bound to a Direct Repeat Response ElementX-ray diffraction3.1362004-06-29
1161KB2|1|C+ 1KB2|1|D5'-D(*CP*AP*CP*GP*GP*TP*TP*CP*AP*CP*GP*AP*GP*GP*TP*TP*CP*A)-3', 5'-D(*TP*GP*AP*AP*CP*CP*TP*CP*GP*TP*GP*AP*AP*CP*CP*GP*TP*G)-3'Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response ElementX-ray diffraction2.7362002-05-03
1172W8L|1|T+ 2W8L|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientationX-ray diffraction3302009-01-27
1183GIK|1|E+ 3GIK|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pairX-ray diffraction2.9312009-05-19
1193NGD|1|C+ 3NGD|1|D5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase IotaX-ray diffraction2.8152010-10-20
1203LDS|1|T+ 3LDS|1|PDNA (5'-D(*CP*AP*(8OG)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*(DDG))-3')Crystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoGX-ray diffraction3322010-06-02
1212W9C|1|E+ 2W9C|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*DOCP)-3', 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-ray diffraction2.9292009-05-12
1222W9C|1|F+ 2W9C|1|D5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*DOCP)-3', 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-ray diffraction2.9292009-05-12
1231H0M|1|E+ 1H0M|1|F5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3'synthetic constructThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-ray diffraction3362002-08-29
1241H0M|1|G+ 1H0M|1|H5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3'synthetic constructThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-ray diffraction3362002-08-29
1252P5O|1|E+ 2P5O|1|FPrimer DNA, Template DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.8332007-04-03
1262P5O|1|G+ 2P5O|1|HPrimer DNA, Template DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.8282007-04-03
1272P5O|1|I+ 2P5O|1|JPrimer DNA, Template DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.8332007-04-03
1282P5O|1|KTemplate DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.802007-04-03
1292V9W|1|D+ 2V9W|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction3312007-10-30
1302V9W|1|F+ 2V9W|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction3292007-10-30
1312C2R|1|T+ 2C2R|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.55302005-11-29
1322OH2|1|Q+ 2OH2|1|S5'-D(*GP*GP*G*GP*GP*AP*AP*GP*GP*AP*CP*CP*C)-3', 5'-D(*TP*T*CP*CP*AP*GP*GP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Ternary Complex of Human DNA PolymeraseX-ray diffraction3.05232007-02-27
1332OH2|1|T+ 2OH2|1|P5'-D(*GP*GP*G*GP*GP*AP*AP*GP*GP*AP*CP*CP*C)-3', 5'-D(*TP*T*CP*CP*AP*GP*GP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Ternary Complex of Human DNA PolymeraseX-ray diffraction3.05272007-02-27
1343IN5|1|T+ 3IN5|1|PDNA (5'-D(*C*CP*TP*AP*(8OG)P*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*(DOC))-3')Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesionX-ray diffraction3.2262009-09-08
1353IN5|1|U+ 3IN5|1|QDNA (5'-D(*C*CP*TP*AP*(8OG)P*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*(DOC))-3')Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesionX-ray diffraction3.2262009-09-08
1361BF5|1|BDNA (5'-D(*AP*CP*AP*GP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*G P*C)-3')Homo sapiensTYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-ray diffraction2.901998-08-12
1371BF5|1|CDNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*AP*CP*GP*GP*GP*AP*AP*AP*CP*T P*G)-3')TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-ray diffraction2.901998-08-12
1382W7O|1|F+ 2W7O|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3'Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine AdductX-ray diffraction3.16262009-06-16
1392W7O|1|T+ 2W7O|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3'Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine AdductX-ray diffraction3.16302009-06-16
1402C2E|1|T+ 2C2E|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.61292005-11-29
1412W8K|1|T+ 2W8K|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientationX-ray diffraction3.1302009-01-27
1422AYG|1|C+ 2AYG|1|D5'-D(*GP*CP*AP*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*TP*TP*GP*C)-3'Crystal structure of HPV6a E2 DNA binding domain bound to an 18 base pair DNA targetX-ray diffraction3.1362006-08-22
1431YNW|1|C+ 1YNW|1|D5'-d(*TP*TP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*AP*A)-3', 5'-d(*TP*TP*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*A)-3'Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response ElementX-ray diffraction3362005-02-15
1443M9M|1|T+ 3M9M|1|PDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')synthetic constructCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-ray diffraction2.9282010-06-16
1452W7P|1|F+ 2W7P|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3'Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine AdductX-ray diffraction3.71262009-06-16
1462W7P|1|T+ 2W7P|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3'Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine AdductX-ray diffraction3.71302009-06-16
1472O8F|1|F+ 2O8F|1|E5'-D(*CP*GP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*CP*CP*GP*TP*C)-3', 5'-D(*GP*AP*CP*GP*GP*CP*CP*GP*CP*CP*GP*CP*TP*AP*GP*CP*G)-3'human MutSalpha (MSH2/MSH6) bound to DNA with a single base T insertX-ray diffraction3.25352007-06-05
1482NLL|1|C+ 2NLL|1|DDNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*TP*TP*(5IU)P*CP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*GP*AP*AP*AP*TP*GP*AP*CP*CP*T P*G)-3')RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNAX-ray diffraction1.9361997-03-12
1493G6P|1|C+ 3G6P|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:FKBP5 complex, 18bpX-ray diffraction1.985362009-04-21
1501NLW|1|F+ 1NLW|1|G5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Mad-Max recognizing DNAX-ray diffraction2362003-02-04
1511NLW|1|H+ 1NLW|1|J5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Mad-Max recognizing DNAX-ray diffraction2362003-02-04
1521BG1|1|BDNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*CP*T)-3')TRANSCRIPTION FACTOR STAT3B/DNA COMPLEXX-ray diffraction2.25181999-01-13
1533G6R|1|C+ 3G6R|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:FKBP5 complex-52, 18bpX-ray diffraction2.3362009-04-21
1543G9J|1|C+ 3G9J|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:Pal, 18bp complex-36X-ray diffraction2.32362009-04-21
1551HCQ|1|C+ 1HCQ|1|DDNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3')THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-ray diffraction2.4361995-11-23
1561HCQ|1|G+ 1HCQ|1|HDNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3')THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-ray diffraction2.4361995-11-23
1572C7A|1|C+ 2C7A|1|D5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP *CP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*TP *TP*TP*GP*TP*TP*CP*TP*G)-3'Homo sapiensSTRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEXX-ray diffraction2.5362006-08-30
1581DCT|1|F+ 1DCT|1|MDNA (5'-D(*AP*CP*CP*AP*GP*CP*AP*GP*GP*(C49)P*CP*AP*CP*CP*AP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*TP*GP*GP*(C5M)P*CP*TP*GP*CP*TP*GP*G)-3')DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-ray diffraction2.8361995-09-15
1591DCT|1|G+ 1DCT|1|NDNA (5'-D(*AP*CP*CP*AP*GP*CP*AP*GP*GP*(C49)P*CP*AP*CP*CP*AP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*TP*GP*GP*(C5M)P*CP*TP*GP*CP*TP*GP*G)-3')DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-ray diffraction2.8331995-09-15
1601DGO|1|AURACIL CONTAINING HAIRPIN DNASOLUTION STRUCTURE OF A URACIL CONTAINING HAIRPIN DNASolution NMR182000-05-03
1612VAI|1|A5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*UP*TP *TP*GP*GP*AP*TP*CP*CP*T)-3'Solution structure of a B-DNA hairpin at high pressureSolution NMR182007-09-11
1622VAH|1|A5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*UP*TP *TP*GP*GP*AP*TP*CP*CP*T)-3'Solution structure of a B-DNA hairpin at low pressure.Solution NMR182007-09-11
1631II1|1|A5'-D(*AP*GP*GP*AP*TP*CP*CP*UP*TP*TP*TP*GP*GP*AP*TP*CP*CP*T)-3'Structural Basis for Poor Uracil Excision from Hairpin DNA: NMR StudySolution NMR182002-05-08
1641IDX|1|A5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*TP*UP*TP*GP*GP*AP*TP*CP*CP*T)-3'Structural Basis for Poor Excision from Hairpin DNA: NMR StudySolution NMR182002-05-08
1651AT4|1|ADNA (5'-D(*GP*AP*GP*AP*GP*AP*DOP*TP*CP*TP*CP*TP*CP*DOP*CP*TP*CP*TP*CP*T)-3')INTRAMOLECULAR DNA TRIPLEX CONTAINING A NON-NUCLEOTIDE LINKER (GAGAGA-X-TCTCCT-X-CTCTCT), NMR, 7 STRUCTURESSolution NMR181998-02-18
1661ZGW|1|B+ 1ZGW|1|C5'-D(*GP*CP*AP*AP*AP*TP*TP*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*A)-3', 5'-D(*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*TP*AP*AP*TP*TP*TP*GP*C)-3'NMR structure of E. Coli Ada protein in complex with DNASolution NMR362005-10-18
1671OSL|1|C+ 1OSL|1|D5'-D(*CP*GP*AP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*TP*CP*G)-3'Solution structure of a dimeric lactose DNA-binding domain complexed to a nonspecific DNA sequenceSolution NMR362004-05-04

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
11DCT|1|F+ 1DCT|1|MDNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-RAY DIFFRACTION2.836B-form double helix,double helix,structureenzyme,methylase,transferase
21DCT|1|G+ 1DCT|1|NDNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-RAY DIFFRACTION2.833B-form double helix,double helix,structureenzyme,methylase,transferase
31RYS|1|D+ 1RYS|1|CREPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-RAY DIFFRACTION2.0331B-form double helix,double helix,structureenzyme,polymerase,transferase
43M9N|1|T+ 3M9N|1|PCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-RAY DIFFRACTION1.9328B-form double helix,double helix,structureenzyme,polymerase,transferase
51RYS|1|F+ 1RYS|1|EREPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-RAY DIFFRACTION2.0331B-form double helix,double helix,structureenzyme,polymerase,transferase
61S0N|1|T+ 1S0N|1|PSnapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-RAY DIFFRACTION2.831double helix,structureenzyme,polymerase,transferase
72JEF|1|T+ 2JEF|1|PThe Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION2.1730B-form double helix,double helix,structureenzyme,polymerase,transferase
82BR0|1|T+ 2BR0|1|PDNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION2.1730B-form double helix,double helix,structureenzyme,polymerase,transferase
92C28|1|T+ 2C28|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.2730B-form double helix,double helix,structureenzyme,polymerase,transferase
102XCA|1|T+ 2XCA|1|PTERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORMX-RAY DIFFRACTION2.530B-form double helix,double helix,structureenzyme,polymerase,transferase
112J6S|1|T+ 2J6S|1|PTernary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-RAY DIFFRACTION2.530B-form double helix,double helix,structureenzyme,polymerase,transferase
122R8H|1|T+ 2R8H|1|PSelectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-RAY DIFFRACTION2.4831B-form double helix,double helix,structureenzyme,polymerase,transferase
132V4Q|1|T+ 2V4Q|1|PPOST-INSERTION COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH M1DG CONTAINING TEMPLATE DNAX-RAY DIFFRACTION2.631B-form double helix,double helix,structureenzyme,polymerase,transferase
142R8I|1|T+ 2R8I|1|PSelectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-RAY DIFFRACTION2.3831B-form double helix,double helix,structureenzyme,polymerase,transferase
152C22|1|T+ 2C22|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.5630B-form double helix,double helix,structureenzyme,polymerase,transferase
162V4R|1|T+ 2V4R|1|PNon-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosineX-RAY DIFFRACTION2.530B-form double helix,double helix,structureenzyme,polymerase,transferase
172VA3|1|T+ 2VA3|1|PComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION2.9829B-form double helix,double helix,structureenzyme,polymerase,transferase
182BQ3|1|T+ 2BQ3|1|PDNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION231B-form double helix,double helix,structureenzyme,polymerase,transferase
192BQU|1|T+ 2BQU|1|PDNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION2.530B-form double helix,double helix,structureenzyme,polymerase,transferase
202BQR|1|T+ 2BQR|1|PDNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION2.3730B-form double helix,double helix,structureenzyme,polymerase,transferase
212J6T|1|T+ 2J6T|1|PTernary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-RAY DIFFRACTION2.630B-form double helix,double helix,structureenzyme,polymerase,transferase
222W9A|1|T+ 2W9A|1|PTernary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTPX-RAY DIFFRACTION2.630B-form double helix,double helix,structureenzyme,polymerase,transferase
232W8L|1|T+ 2W8L|1|PY-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientationX-RAY DIFFRACTION330B-form double helix,double helix,structureenzyme,polymerase,transferase
242UVR|1|T+ 2UVR|1|PCrystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.931B-form double helix,double helix,structureenzyme,polymerase,transferase
252W8K|1|T+ 2W8K|1|PY-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientationX-RAY DIFFRACTION3.130double helix,structureenzyme,polymerase,transferase
262UVW|1|T+ 2UVW|1|PCrystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.0931B-form double helix,double helix,structureenzyme,polymerase,transferase
272UVU|1|T+ 2UVU|1|PCrystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.731B-form double helix,double helix,structureenzyme,polymerase,transferase
282J6U|1|T+ 2J6U|1|PTernary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP.X-RAY DIFFRACTION2.531B-form double helix,double helix,structureenzyme,polymerase,transferase
292JEI|1|T+ 2JEI|1|PThe Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION2.3930B-form double helix,double helix,structureenzyme,polymerase,transferase
302JEJ|1|T+ 2JEJ|1|PThe Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION1.8633enzyme,polymerase,transferase
312UVV|1|T+ 2UVV|1|PCrystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.230B-form double helix,double helix,structureenzyme,polymerase,transferase
322JEG|1|T+ 2JEG|1|PThe Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION2.3831B-form double helix,double helix,structureenzyme,polymerase,transferase
333NHG|1|T+ 3NHG|1|PRB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dGX-RAY DIFFRACTION2.531B-form double helix,double helix,structureenzyme,polymerase,transferase
343NE6|1|T+ 3NE6|1|PRB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dGX-RAY DIFFRACTION2.00131B-form double helix,double helix,structureenzyme,polymerase,transferase
353NGI|1|T+ 3NGI|1|PRB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dGX-RAY DIFFRACTION1.88631B-form double helix,double helix,structureenzyme,polymerase,transferase
363NAE|1|T+ 3NAE|1|PRB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite GuanidinohydantoinX-RAY DIFFRACTION2.00331B-form double helix,double helix,structureenzyme,polymerase,transferase
373NDK|1|T+ 3NDK|1|PRB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dGX-RAY DIFFRACTION231B-form double helix,double helix,structureenzyme,polymerase,transferase
383NCI|1|T+ 3NCI|1|PRB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolutionX-RAY DIFFRACTION1.7931B-form double helix,double helix,structureenzyme,polymerase,transferase
393CFR|1|T+ 3CFR|1|PStructure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2X-RAY DIFFRACTION2.431B-form double helix,double helix,structureenzyme,polymerase,transferase
403LZJ|1|T+ 3LZJ|1|PRB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanineX-RAY DIFFRACTION2.0531B-form double helix,double helix,structureenzyme,polymerase,transferase
413L8B|1|C+ 3L8B|1|DCrystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-RAY DIFFRACTION2.1529B-form double helix,double helix,structureenzyme,polymerase,transferase
423L8B|1|E+ 3L8B|1|FCrystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-RAY DIFFRACTION2.1529B-form double helix,double helix,structureenzyme,polymerase,transferase
433LZI|1|T+ 3LZI|1|PRB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanineX-RAY DIFFRACTION2.331B-form double helix,double helix,structureenzyme,polymerase,transferase
442P5O|1|KCrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.80B-form double helix,double helix,structureenzyme,polymerase,transferase
452P5O|1|I+ 2P5O|1|JCrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.833B-form double helix,double helix,structureenzyme,polymerase,transferase
463LDS|1|T+ 3LDS|1|PCrystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoGX-RAY DIFFRACTION332B-form double helix,double helix,structureenzyme,polymerase,transferase
472P5O|1|E+ 2P5O|1|FCrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.833B-form double helix,double helix,structureenzyme,polymerase,transferase
482OZM|1|T+ 2OZM|1|PCrystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analogX-RAY DIFFRACTION2.8632double helix,structureenzyme,polymerase,transferase
492OZS|1|T+ 2OZS|1|PCrystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMPX-RAY DIFFRACTION2.7532B-form double helix,double helix,structureenzyme,polymerase,transferase
501Q9Y|1|T+ 1Q9Y|1|PCRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNAX-RAY DIFFRACTION2.832B-form double helix,double helix,structureenzyme,polymerase,transferase
511IG9|1|T+ 1IG9|1|PStructure of the Replicating Complex of a Pol Alpha Family DNA PolymeraseX-RAY DIFFRACTION2.632B-form double helix,double helix,structureenzyme,polymerase,transferase
523CQ8|1|T+ 3CQ8|1|PTernary complex of the L415F mutant RB69 exo(-)polymeraseX-RAY DIFFRACTION2.532B-form double helix,double helix,structureenzyme,polymerase,transferase
533CFP|1|T+ 3CFP|1|PStructure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1X-RAY DIFFRACTION2.532B-form double helix,double helix,structureenzyme,polymerase,transferase
542DTU|1|I+ 2DTU|1|JCrystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3733B-form double helix,double helix,structureenzyme,polymerase,transferase
552DTU|1|K+ 2DTU|1|LCrystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3733B-form double helix,double helix,structureenzyme,polymerase,transferase
562DTU|1|E+ 2DTU|1|FCrystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3733B-form double helix,double helix,structureenzyme,polymerase,transferase
572DTU|1|G+ 2DTU|1|HCrystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3733B-form double helix,double helix,structureenzyme,polymerase,transferase
582DY4|1|G+ 2DY4|1|HCrystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6533enzyme,polymerase,transferase
592DY4|1|K+ 2DY4|1|LCrystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6533enzyme,polymerase,transferase
602DY4|1|I+ 2DY4|1|JCrystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6533enzyme,polymerase,transferase
611Q9X|1|G+ 1Q9X|1|KCrystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6931double helix,structureenzyme,polymerase,transferase
621Q9X|1|H+ 1Q9X|1|LCrystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6931double helix,structureenzyme,polymerase,transferase
631Q9X|1|F+ 1Q9X|1|JCrystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6931double helix,structureenzyme,polymerase,transferase
641Q9X|1|E+ 1Q9X|1|ICrystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6931double helix,structureenzyme,polymerase,transferase
652P5O|1|G+ 2P5O|1|HCrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.828B-form double helix,double helix,structureenzyme,polymerase,transferase
662W7P|1|F+ 2W7P|1|EStructure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine AdductX-RAY DIFFRACTION3.7126B-form double helix,double helix,structureenzyme,polymerase,transferase
672W7O|1|F+ 2W7O|1|EStructure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine AdductX-RAY DIFFRACTION3.1626B-form double helix,double helix,structureenzyme,polymerase,transferase
682W7O|1|T+ 2W7O|1|PStructure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine AdductX-RAY DIFFRACTION3.1630B-form double helix,double helix,structureenzyme,polymerase,transferase
692W7P|1|T+ 2W7P|1|PStructure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine AdductX-RAY DIFFRACTION3.7130B-form double helix,double helix,structureenzyme,polymerase,transferase
702OH2|1|Q+ 2OH2|1|STernary Complex of Human DNA PolymeraseX-RAY DIFFRACTION3.0523double helix,structureenzyme,polymerase,transferase
712OH2|1|T+ 2OH2|1|PTernary Complex of Human DNA PolymeraseX-RAY DIFFRACTION3.0527double helix,structureenzyme,polymerase,transferase
723IN5|1|U+ 3IN5|1|QStructure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesionX-RAY DIFFRACTION3.226B-form double helix,double helix,structureenzyme,polymerase,transferase
733IN5|1|T+ 3IN5|1|PStructure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesionX-RAY DIFFRACTION3.226B-form double helix,double helix,structureenzyme,polymerase,transferase
742V9W|1|D+ 2V9W|1|CComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION331double helix,structureenzyme,polymerase,transferase
752V9W|1|F+ 2V9W|1|EComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION329double helix,structureenzyme,polymerase,transferase
762XCP|1|T+ 2XCP|1|PTERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-RAY DIFFRACTION2.631B-form double helix,double helix,structureenzyme,polymerase,transferase
772VA2|1|D+ 2VA2|1|CComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION2.829B-form double helix,double helix,structureenzyme,polymerase,transferase
782XCP|1|F+ 2XCP|1|ETERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-RAY DIFFRACTION2.631B-form double helix,double helix,structureenzyme,polymerase,transferase
793M9M|1|T+ 3M9M|1|PCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-RAY DIFFRACTION2.928enzyme,polymerase,transferase
802VA2|1|F+ 2VA2|1|EComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION2.831B-form double helix,double helix,structureenzyme,polymerase,transferase
811S9F|1|L+ 1S9F|1|HDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
821S97|1|L+ 1S97|1|HDPO4 with GT mismatchX-RAY DIFFRACTION2.430B-form double helix,double helix,structureenzyme,polymerase,transferase
831S9F|1|I+ 1S9F|1|EDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
841S97|1|I+ 1S97|1|EDPO4 with GT mismatchX-RAY DIFFRACTION2.430B-form double helix,double helix,structureenzyme,polymerase,transferase
851S97|1|J+ 1S97|1|FDPO4 with GT mismatchX-RAY DIFFRACTION2.430B-form double helix,double helix,structureenzyme,polymerase,transferase
861JX4|1|T+ 1JX4|1|PCrystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming NucleotideX-RAY DIFFRACTION1.730B-form double helix,double helix,structureenzyme,polymerase,transferase
873GIJ|1|E+ 3GIJ|1|DDpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-RAY DIFFRACTION2.431B-form double helix,double helix,structureenzyme,polymerase,transferase
883GIL|1|E+ 3GIL|1|DDpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-RAY DIFFRACTION2.7131B-form double helix,double helix,structureenzyme,polymerase,transferase
893GIM|1|E+ 3GIM|1|DDpo4 extension ternary complex with oxoG(anti)-G(syn) pairX-RAY DIFFRACTION2.731B-form double helix,double helix,structureenzyme,polymerase,transferase
903GIK|1|E+ 3GIK|1|DDpo4 extension ternary complex with the oxoG(anti)-C(anti) pairX-RAY DIFFRACTION2.931B-form double helix,double helix,structureenzyme,polymerase,transferase
911S9F|1|J+ 1S9F|1|FDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
921S97|1|K+ 1S97|1|GDPO4 with GT mismatchX-RAY DIFFRACTION2.430B-form double helix,double helix,structureenzyme,polymerase,transferase
931S9F|1|K+ 1S9F|1|GDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
943GIL|1|J+ 3GIL|1|HDpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-RAY DIFFRACTION2.7129B-form double helix,double helix,structureenzyme,polymerase,transferase
953GIJ|1|J+ 3GIJ|1|HDpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-RAY DIFFRACTION2.427B-form double helix,double helix,structureenzyme,polymerase,transferase
963K57|1|T+ 3K57|1|PCrystal structure of E.coli Pol II-normal DNA-dATP ternary complexX-RAY DIFFRACTION2.0830B-form double helix,double helix,structureenzyme,polymerase,transferase
973K5L|1|T+ 3K5L|1|PCrystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complexX-RAY DIFFRACTION2.731double helix,structureenzyme,polymerase,transferase
982C2R|1|T+ 2C2R|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.5530B-form double helix,double helix,structureenzyme,polymerase,transferase
992C2E|1|T+ 2C2E|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.6129B-form double helix,double helix,structureenzyme,polymerase,transferase
1002W9B|1|E+ 2W9B|1|CBinary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-RAY DIFFRACTION2.2830B-form double helix,double helix,structureenzyme,polymerase,transferase
1012XC9|1|T+ 2XC9|1|PBINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORMX-RAY DIFFRACTION2.231B-form double helix,double helix,structureenzyme,polymerase,transferase
1022W9B|1|F+ 2W9B|1|DBinary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-RAY DIFFRACTION2.2830B-form double helix,double helix,structureenzyme,polymerase,transferase
1032C2D|1|T+ 2C2D|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.5728B-form double helix,double helix,structureenzyme,polymerase,transferase
1042W9C|1|F+ 2W9C|1|DTernary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-RAY DIFFRACTION2.929double helix,structureenzyme,polymerase,transferase
1052W9C|1|E+ 2W9C|1|CTernary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-RAY DIFFRACTION2.929double helix,structureenzyme,polymerase,transferase
1063EPI|1|B+ 3EPI|1|CStructure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTPX-RAY DIFFRACTION2.915double helix,structureenzyme,polymerase,transferase
1073EPG|1|B+ 3EPG|1|CStructure of Human DNA Polymerase Iota complexed with N2-ethylguanineX-RAY DIFFRACTION2.515enzyme,polymerase,transferase
1083OSN|1|B+ 3OSN|1|CStructural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase IotaX-RAY DIFFRACTION1.915enzyme,polymerase,transferase
1093NGD|1|C+ 3NGD|1|DStructural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase IotaX-RAY DIFFRACTION2.815enzyme,polymerase,transferase
1101B3T|1|C+ 1B3T|1|DEBNA-1 NUCLEAR PROTEIN/DNA COMPLEXX-RAY DIFFRACTION2.236B-form double helix,double helix,structureregulatory,transcription
1112AYG|1|C+ 2AYG|1|DCrystal structure of HPV6a E2 DNA binding domain bound to an 18 base pair DNA targetX-RAY DIFFRACTION3.136regulatory,transcription
1121H0M|1|E+ 1H0M|1|FThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-RAY DIFFRACTION336B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
1131H0M|1|G+ 1H0M|1|HThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-RAY DIFFRACTION336B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
1143DW9|1|E+ 3DW9|1|FSgrAI with cognate DNA and manganese boundX-RAY DIFFRACTION2.236B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1153DVO|1|E+ 3DVO|1|FSgrAI with cognate DNA and calcium boundX-RAY DIFFRACTION1.89236B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1163DVO|1|G+ 3DVO|1|HSgrAI with cognate DNA and calcium boundX-RAY DIFFRACTION1.89236B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1172NL8|1|WThe origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)X-RAY DIFFRACTION2.318B-form double helix,double helix,feature,mispair,structureDNA replication/repair,enzyme,helicase,hydrolase,regulatory
1181R0N|1|C+ 1R0N|1|DCrystal Structure of Heterodimeric Ecdsyone receptor DNA binding complexX-RAY DIFFRACTION2.636B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1191R0O|1|C+ 1R0O|1|DCrystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding ComplexX-RAY DIFFRACTION2.2436B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1202P5L|1|A+ 2P5L|1|BCrystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-RAY DIFFRACTION2.8536B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
1212P5L|1|E+ 2P5L|1|FCrystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-RAY DIFFRACTION2.8535B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
1223BSE|1|A+ 3BSE|1|BCrystal structure analysis of a 16-base-pair B-DNAX-RAY DIFFRACTION1.634B-form double helix,double helix,structure
1231KB6|1|C+ 1KB6|1|DCrystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response ElementX-RAY DIFFRACTION2.736B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1241KB4|1|C+ 1KB4|1|DCrystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response ElementX-RAY DIFFRACTION2.836B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1251KB2|1|C+ 1KB2|1|DCrystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response ElementX-RAY DIFFRACTION2.736B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1261OSL|1|C+ 1OSL|1|DSolution structure of a dimeric lactose DNA-binding domain complexed to a nonspecific DNA sequenceSOLUTION NMR36double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
1271ZGW|1|B+ 1ZGW|1|CNMR structure of E. Coli Ada protein in complex with DNASOLUTION NMR36double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription
1281YNW|1|C+ 1YNW|1|DCrystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response ElementX-RAY DIFFRACTION336B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1292NLL|1|C+ 2NLL|1|DRETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNAX-RAY DIFFRACTION1.936B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1302BNZ|1|E+ 2BNZ|1|FStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-RAY DIFFRACTION2.635DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1312BNW|1|E+ 2BNW|1|FStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-RAY DIFFRACTION2.4536DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1322CAX|1|U+ 2CAX|1|YSTRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX REPRESSOR OMEGA TO MUTATED DIRECT DNA HEPTAD REPEATSX-RAY DIFFRACTION2.936DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1332BNW|1|G+ 2BNW|1|HStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-RAY DIFFRACTION2.4536DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1342C7A|1|C+ 2C7A|1|DSTRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEXX-RAY DIFFRACTION2.536B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1353G6R|1|C+ 3G6R|1|DGR DNA binding domain:FKBP5 complex-52, 18bpX-RAY DIFFRACTION2.336B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1363G9J|1|C+ 3G9J|1|DGR DNA binding domain:Pal, 18bp complex-36X-RAY DIFFRACTION2.3236B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1373G6P|1|C+ 3G6P|1|DGR DNA binding domain:FKBP5 complex, 18bpX-RAY DIFFRACTION1.98536B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1381R4I|1|C+ 1R4I|1|DCrystal Structure of Androgen Receptor DNA-Binding Domain Bound to a Direct Repeat Response ElementX-RAY DIFFRACTION3.136B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1391HCQ|1|C+ 1HCQ|1|DTHE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-RAY DIFFRACTION2.436B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1401HCQ|1|G+ 1HCQ|1|HTHE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-RAY DIFFRACTION2.436B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1412W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|HCrystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene RegulationX-RAY DIFFRACTION1.8572B-form double helix,double helix,structureregulatory,transcription
1422F8X|1|X+ 2F8X|1|YCrystal structure of activated Notch, CSL and MAML on HES-1 promoter DNA sequenceX-RAY DIFFRACTION3.2536B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
1431NLW|1|H+ 1NLW|1|JCrystal structure of Mad-Max recognizing DNAX-RAY DIFFRACTION236B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
1441NLW|1|F+ 1NLW|1|GCrystal structure of Mad-Max recognizing DNAX-RAY DIFFRACTION236B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
1453MKZ|1|Y+ 3MKZ|1|ZStructure of SopB(155-272)-18mer complex, P21 formX-RAY DIFFRACTION2.9836B-form double helix,double helix,structureregulatory
1463MKZ|1|C+ 3MKZ|1|DStructure of SopB(155-272)-18mer complex, P21 formX-RAY DIFFRACTION2.9836B-form double helix,double helix,structureregulatory
1473MKY|1|T+ 3MKY|1|UStructure of SopB(155-323)-18mer DNA complex, I23 formX-RAY DIFFRACTION2.8636B-form double helix,double helix,structurecentromere,chromatin,structural
1483MKW|1|T+ 3MKW|1|UStructure of sopB(155-272)-18mer complex, I23 formX-RAY DIFFRACTION2.9936B-form double helix,double helix,structureregulatory
1491P8K|1|A+ 1P8K|1|C+ 1P8K|1|D+ 1P8K|1|BThe structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factorX-RAY DIFFRACTION2.662B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1502OG0|1|C+ 2OG0|1|DCrystal Structure of the Lambda Xis-DNA complexX-RAY DIFFRACTION1.936B-form double helix,double helix,structureenzyme,recombinase
1511BF5|1|BTYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-RAY DIFFRACTION2.90double helix,structureDNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription
1521BG1|1|BTRANSCRIPTION FACTOR STAT3B/DNA COMPLEXX-RAY DIFFRACTION2.2518B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription
1531BF5|1|CTYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-RAY DIFFRACTION2.90double helix,structureDNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription
1543FBD|1|E+ 3FBD|1|FCrystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-RAY DIFFRACTION2.936B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1553FBD|1|B+ 3FBD|1|CCrystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-RAY DIFFRACTION2.936B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1562IVH|1|B+ 2IVH|1|CCrystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNAX-RAY DIFFRACTION2.836B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1571WBD|1|E+ 1WBD|1|FCrystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatchX-RAY DIFFRACTION2.435B-form double helix,double helix,feature,mispair,structureDNA replication/repair,regulatory
1581WB9|1|E+ 1WB9|1|FCrystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatchX-RAY DIFFRACTION2.135B-form double helix,double helix,feature,mispair,structureDNA replication/repair,regulatory
1591WBB|1|E+ 1WBB|1|FCrystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatchX-RAY DIFFRACTION2.535B-form double helix,double helix,feature,mispair,structureDNA replication/repair,regulatory
1602O8F|1|F+ 2O8F|1|Ehuman MutSalpha (MSH2/MSH6) bound to DNA with a single base T insertX-RAY DIFFRACTION3.2535B-form double helix,double helix,structureDNA replication/repair,regulatory
1612BNZ|1|HStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-RAY DIFFRACTION2.65DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1621AT4|1|AINTRAMOLECULAR DNA TRIPLEX CONTAINING A NON-NUCLEOTIDE LINKER (GAGAGA-X-TCTCCT-X-CTCTCT), NMR, 7 STRUCTURESSOLUTION NMR18structure,triple helix
1632VAH|1|ASolution structure of a B-DNA hairpin at low pressure.SOLUTION NMR18B-form double helix,double helix,structure
1642VAI|1|ASolution structure of a B-DNA hairpin at high pressureSOLUTION NMR18double helix,structure
1651II1|1|AStructural Basis for Poor Uracil Excision from Hairpin DNA: NMR StudySOLUTION NMR18NAKB_NA_annotationNAKB_protein_annotation
1661DGO|1|ASOLUTION STRUCTURE OF A URACIL CONTAINING HAIRPIN DNASOLUTION NMR18double helix,structure
1671IDX|1|AStructural Basis for Poor Excision from Hairpin DNA: NMR StudySOLUTION NMR18double helix,structure

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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