Equivalence class DNA_all_05340.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3K0S|1|E+ 3K0S|1|F (rep) | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*C*AP*CP*T*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3' | Crystal structure of E.coli DNA mismatch repair protein MutS, D693N mutant, in complex with GT mismatched DNA | X-ray diffraction | 2.2 | 35 | 2010-02-16 | ||||
| 2 | 1W7A|1|E+ 1W7A|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP* AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP* CP*T)-3' | ATP bound MutS | X-ray diffraction | 2.27 | 35 | 2004-09-10 | ||||
| 3 | 1E3M|1|E+ 1E3M|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP* GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*CP*AP*CP* TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3' | Escherichia coli | The crystal structure of E. coli MutS binding to DNA with a G:T mismatch | X-ray diffraction | 2.2 | 35 | 2000-11-01 | |||
| 4 | 1OH6|1|E+ 1OH6|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*AP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP* CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*AP*TP*GP*GP* CP*AP*GP*CP*T)-3' | synthetic construct | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH | X-ray diffraction | 2.4 | 32 | 2003-08-08 | |||
| 5 | 1NG9|1|E+ 1NG9|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3' | E.coli MutS R697A: an ATPase-asymmetry mutant | X-ray diffraction | 2.6 | 35 | 2003-02-11 | ||||
| 6 | 1OH7|1|E+ 1OH7|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP *CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*GP*TP*GP*GP *CP*AP*GP*CP*T)-3' | synthetic construct | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:G MISMATCH | X-ray diffraction | 2.5 | 35 | 2003-08-08 | |||
| 7 | 3OS1|1|T | DNA (5'-D(*CP*CP*CP*GP*AP*GP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*CP*TP*CP*GP*GP*G)-3') | PFV target capture complex (TCC) at 2.97 A resolution | X-ray diffraction | 2.97 | 16 | 2010-11-17 | ||||
| 8 | 1OH5|1|E+ 1OH5|1|F | 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*CP*GP *CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP *CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP *GP*AP*CP*AP*CP*TP*GP*GP*TP*GP*CP*AP*TP*GP*GP *CP*AP*GP*CP*T)-3' | synthetic construct | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH | X-ray diffraction | 2.9 | 35 | 2003-08-08 | |||
| 9 | 3OS2|1|T | DNA (5'-D(*CP*CP*CP*GP*AP*GP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*CP*TP*CP*GP*GP*G)-3') | PFV target capture complex (TCC) at 3.32 A resolution | X-ray diffraction | 3.32 | 16 | 2010-11-17 | ||||
| 10 | 2HZV|1|I+ 2HZV|1|J | 5'-D(*AP*GP*TP*AP*TP*GP*AP*CP*GP*AP*AP*TP*AP*CP*TP*TP*AP*AP*AP*AP*TP*CP*GP*TP*CP*AP*TP*AP*CP*T)-3', 5'-D(*AP*GP*TP*AP*TP*GP*AP*CP*GP*AP*TP*TP*TP*TP*AP*AP*GP*TP*AP*TP*TP*CP*GP*TP*CP*AP*TP*AP*CP*T)-3' | NikR-operator DNA complex | X-ray diffraction | 3.1 | 60 | 2006-08-22 | ||||
| 11 | 2HZV|1|K+ 2HZV|1|L | 5'-D(*AP*GP*TP*AP*TP*GP*AP*CP*GP*AP*AP*TP*AP*CP*TP*TP*AP*AP*AP*AP*TP*CP*GP*TP*CP*AP*TP*AP*CP*T)-3', 5'-D(*AP*GP*TP*AP*TP*GP*AP*CP*GP*AP*TP*TP*TP*TP*AP*AP*GP*TP*AP*TP*TP*CP*GP*TP*CP*AP*TP*AP*CP*T)-3' | NikR-operator DNA complex | X-ray diffraction | 3.1 | 60 | 2006-08-22 | ||||
| 12 | 1L9Z|1|T | template DNA strand | Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution | X-ray diffraction | 6.5 | 30 | 2002-05-31 | ||||
| 13 | 2ARG|1|A | DNA APTAMER [5'-D (*TP*GP*AP*CP*CP*AP*GP*GP*GP*CP*AP*AP*AP*CP*GP*GP*TP*AP* GP*GP*TP*GP*AP*GP*TP*GP*GP*TP*CP*A)-3'] | FORMATION OF AN AMINO ACID BINDING POCKET THROUGH ADAPTIVE ZIPPERING-UP OF A LARGE DNA HAIRPIN LOOP, NMR, 9 STRUCTURES | Solution NMR | 30 | 1999-03-23 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 2ARG|1|A | FORMATION OF AN AMINO ACID BINDING POCKET THROUGH ADAPTIVE ZIPPERING-UP OF A LARGE DNA HAIRPIN LOOP, NMR, 9 STRUCTURES | SOLUTION NMR | 30 | aptamer,function | |||
| 2 | 1OH5|1|E+ 1OH5|1|F | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH | X-RAY DIFFRACTION | 2.9 | 35 | B-form double helix,double helix,structure | DNA replication/repair,regulatory | |
| 3 | 1NG9|1|E+ 1NG9|1|F | E.coli MutS R697A: an ATPase-asymmetry mutant | X-RAY DIFFRACTION | 2.6 | 35 | B-form double helix,double helix,structure | DNA replication/repair,regulatory | |
| 4 | 1E3M|1|E+ 1E3M|1|F | The crystal structure of E. coli MutS binding to DNA with a G:T mismatch | X-RAY DIFFRACTION | 2.2 | 35 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory | |
| 5 | 1W7A|1|E+ 1W7A|1|F | ATP bound MutS | X-RAY DIFFRACTION | 2.27 | 35 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory | |
| 6 | 3K0S|1|E+ 3K0S|1|F | Crystal structure of E.coli DNA mismatch repair protein MutS, D693N mutant, in complex with GT mismatched DNA | X-RAY DIFFRACTION | 2.2 | 35 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory | |
| 7 | 1OH7|1|E+ 1OH7|1|F | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:G MISMATCH | X-RAY DIFFRACTION | 2.5 | 35 | B-form double helix,double helix,structure | DNA replication/repair,regulatory | |
| 8 | 1OH6|1|E+ 1OH6|1|F | THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH | X-RAY DIFFRACTION | 2.4 | 32 | B-form double helix,double helix,structure | DNA replication/repair,regulatory | |
| 9 | 3OS1|1|T | PFV target capture complex (TCC) at 2.97 A resolution | X-RAY DIFFRACTION | 2.97 | 16 | enzyme,recombinase | ||
| 10 | 3OS2|1|T | PFV target capture complex (TCC) at 3.32 A resolution | X-RAY DIFFRACTION | 3.32 | 16 | enzyme,recombinase | ||
| 11 | 2HZV|1|I+ 2HZV|1|J | NikR-operator DNA complex | X-RAY DIFFRACTION | 3.1 | 60 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 12 | 2HZV|1|K+ 2HZV|1|L | NikR-operator DNA complex | X-RAY DIFFRACTION | 3.1 | 60 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 13 | 1L9Z|1|T | Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution | X-RAY DIFFRACTION | 6.5 | 30 | enzyme,polymerase,regulatory,transcription,transferase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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