Equivalence class DNA_all_69756.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2C9L|1|A+ 2C9L|1|B (rep) | 5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*CP *TP*CP*AP*TP*GP*AP*AP*GP*T)-3', 5'-D(*AP*CP*TP*TP*CP*AP*CP*TP*GP*AP *GP*TP*CP*AP*GP*TP*GP*CP*T)-3' | human gammaherpesvirus 4 | Structure of the Epstein-Barr virus ZEBRA protein | X-ray diffraction | 2.25 | 37 | 2006-02-21 | |||
| 2 | 2ASD|1|E+ 2ASD|1|D | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Insertion Ternary Complex | X-ray diffraction | 1.95 | 30 | 2006-01-10 | ||||
| 3 | 2ASD|1|J+ 2ASD|1|H | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Insertion Ternary Complex | X-ray diffraction | 1.95 | 32 | 2006-01-10 | ||||
| 4 | 3KMD|1|E+ 3KMD|1|F | 5'-D(*GP*GP*GP*CP*AP*TP*GP*CP*CP*TP*AP*GP*GP*CP*AP*TP*GP*CP*C)-3' | Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer | X-ray diffraction | 2.15 | 38 | 2010-02-23 | ||||
| 5 | 2ASJ|1|E+ 2ASJ|1|D | 5'-D(*CP*TP*AP*AP*CP*(8OG)*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Preinsertion Binary Complex | X-ray diffraction | 2.35 | 26 | 2006-01-10 | ||||
| 6 | 2ASJ|1|J+ 2ASJ|1|H | 5'-D(*CP*TP*AP*AP*CP*(8OG)*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Preinsertion Binary Complex | X-ray diffraction | 2.35 | 26 | 2006-01-10 | ||||
| 7 | 3K9F|1|F+ 3K9F|1|H+ 3K9F|1|E+ 3K9F|1|G | DNA (5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3'), DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3'), DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3') | Detailed structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases | X-ray diffraction | 2.9 | 36 | 2009-10-27 | ||||
| 8 | 3LTN|1|F+ 3LTN|1|H+ 3LTN|1|E+ 3LTN|1|G | 5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3', 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3', 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3', 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3' | Inhibitor-stabilized topoisomerase IV-DNA cleavage complex (S. pneumoniae) | X-ray diffraction | 3.1 | 36 | 2010-05-05 | ||||
| 9 | 3KSA|1|F+ 3KSA|1|H+ 3KSA|1|E+ 3KSA|1|G | 5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3', 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3', 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3', 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3' | Detailed structural insight into the DNA cleavage complex of type IIA topoisomerases (cleaved form) | X-ray diffraction | 3.3 | 36 | 2010-05-05 | ||||
| 10 | 1CRX|1|D+ 1CRX|1|E | DNA (5'-D(*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(P*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*GP*C)-3') | CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE I | X-ray diffraction | 2.4 | 34 | 1998-10-14 | ||||
| 11 | 2R8G|1|T+ 2R8G|1|P | 5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DT)-3', 5'-D(*DTP*DCP*DAP*DCP*(P)P*DGP*DAP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3' | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-ray diffraction | 2.7 | 31 | 2008-07-22 | ||||
| 12 | 2H7H|1|X+ 2H7H|1|Y | 5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3', 5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3' | Crystal structure of the JUN BZIP homodimer complexed with AP-1 DNA | X-ray diffraction | 2.3 | 38 | 2007-06-12 | ||||
| 13 | 3GII|1|E+ 3GII|1|D | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation | X-ray diffraction | 2.6 | 31 | 2009-05-19 | ||||
| 14 | 2ASL|1|E+ 2ASL|1|D | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3' | oxoG-modified Postinsertion Binary Complex | X-ray diffraction | 2.65 | 31 | 2006-01-10 | ||||
| 15 | 2ASL|1|J+ 2ASL|1|H | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3' | oxoG-modified Postinsertion Binary Complex | X-ray diffraction | 2.65 | 31 | 2006-01-10 | ||||
| 16 | 1IGN|1|C+ 1IGN|1|D | DNA (5'-D(*CP*CP*GP*CP*AP*CP*AP*CP*CP*CP*AP*CP*AP*CP*AP*CP*C P*AP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G P*CP*G)-3') | DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE | X-ray diffraction | 2.25 | 38 | 1997-01-27 | ||||
| 17 | 1IGN|1|E+ 1IGN|1|F | DNA (5'-D(*CP*CP*GP*CP*AP*CP*AP*CP*CP*CP*AP*CP*AP*CP*AP*CP*C P*AP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G P*CP*G)-3') | DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE | X-ray diffraction | 2.25 | 37 | 1997-01-27 | ||||
| 18 | 2ATL|1|E+ 2ATL|1|D | 5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | Unmodified Insertion Ternary Complex | X-ray diffraction | 2.8 | 30 | 2006-01-10 | ||||
| 19 | 2ATL|1|J+ 2ATL|1|H | 5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | Unmodified Insertion Ternary Complex | X-ray diffraction | 2.8 | 32 | 2006-01-10 | ||||
| 20 | 3PT6|1|C+ 3PT6|1|I | DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3') | Crystal structure of mouse DNMT1(650-1602) in complex with DNA | X-ray diffraction | 3 | 38 | 2010-12-29 | ||||
| 21 | 3PT6|1|D+ 3PT6|1|J | DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3') | Crystal structure of mouse DNMT1(650-1602) in complex with DNA | X-ray diffraction | 3 | 38 | 2010-12-29 | ||||
| 22 | 3PTA|1|B+ 3PTA|1|C | DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3') | Crystal structure of human DNMT1(646-1600) in complex with DNA | X-ray diffraction | 3.6 | 38 | 2010-12-29 | ||||
| 23 | 3KHG|1|E+ 3KHG|1|D | 5'-D(*C*CP*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-ray diffraction | 2.96 | 32 | 2010-02-16 | ||||
| 24 | 3KHG|1|J+ 3KHG|1|H | 5'-D(*C*CP*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-ray diffraction | 2.96 | 18 | 2010-02-16 | ||||
| 25 | 2RGR|1|D+ 2RGR|1|C | DNA | Topoisomerase IIA bound to G-segment DNA | X-ray diffraction | 3 | 34 | 2007-12-25 | ||||
| 26 | 2AU0|1|E+ 2AU0|1|D | 5'-D(*CP*TP*AP*AP*CP*G*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | Unmodified preinsertion binary complex | X-ray diffraction | 2.7 | 26 | 2006-01-10 | ||||
| 27 | 2AU0|1|J+ 2AU0|1|H | 5'-D(*CP*TP*AP*AP*CP*G*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | Unmodified preinsertion binary complex | X-ray diffraction | 2.7 | 26 | 2006-01-10 | ||||
| 28 | 1H9T|1|X+ 1H9T|1|Y | 5'-D(*CP*AP*TP*CP*TP*GP*GP*TP*AP*CP*GP*AP* CP*CP*AP*GP*AP*TP*C)-3', 5'-D(*GP*AP*TP*CP*TP*GP*GP*TP*CP*GP*TP*AP* CP*CP*AP*GP*AP*TP*G)-3' | FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATOR | X-ray diffraction | 3.25 | 38 | 2001-04-04 | ||||
| 29 | 1ZR2|1|J+ 1ZR2|1|K | TCAGTGTCCGATAATTTAT, TTATCGGACACTG | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAs | X-ray diffraction | 3.9 | 32 | 2005-08-30 | ||||
| 30 | 1ZR2|1|X+ 1ZR2|1|Y | TCAGTGTCCGATAATTTAT, TTATCGGACACTG | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAs | X-ray diffraction | 3.9 | 32 | 2005-08-30 | ||||
| 31 | 3FOF|1|F+ 3FOF|1|H+ 3FOF|1|E+ 3FOF|1|G | DNA (5'-D(P*AP*CP*CP*AP*AP*GP*GP*TP*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3'), DNA (5'-D(P*CP*TP*GP*TP*TP*TP*TP*AP*CP*GP*TP*GP*CP*AP*T)-3'), DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3') | Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases | X-ray diffraction | 4 | 68 | 2009-02-24 | ||||
| 32 | 2HMI|1|E+ 2HMI|1|F | DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') | HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX | X-ray diffraction | 2.8 | 37 | 1998-10-14 | ||||
| 33 | 1J5O|1|T+ 1J5O|1|P | 5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3' | CRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMER | X-ray diffraction | 3.5 | 37 | 2002-06-14 | ||||
| 34 | 3FOE|1|F+ 3FOE|1|H+ 3FOE|1|E+ 3FOE|1|G | DNA (5'-D(P*AP*CP*CP*AP*AP*GP*GP*TP*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3'), DNA (5'-D(P*CP*TP*GP*TP*TP*TP*TP*AP*CP*GP*TP*GP*CP*AP*T)-3'), DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3') | Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases | X-ray diffraction | 4.001 | 68 | 2009-02-24 | ||||
| 35 | 1NGM|1|C+ 1NGM|1|D | 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-ray diffraction | 2.95 | 38 | 2003-03-25 | ||||
| 36 | 1NGM|1|G+ 1NGM|1|H | 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-ray diffraction | 2.95 | 38 | 2003-03-25 | ||||
| 37 | 1NGM|1|K+ 1NGM|1|L | 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-ray diffraction | 2.95 | 38 | 2003-03-25 | ||||
| 38 | 1NGM|1|O+ 1NGM|1|P | 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-ray diffraction | 2.95 | 38 | 2003-03-25 | ||||
| 39 | 1NKP|1|F+ 1NKP|1|G | 5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' | Crystal structure of Myc-Max recognizing DNA | X-ray diffraction | 1.8 | 38 | 2003-02-04 | ||||
| 40 | 1LAT|1|C+ 1LAT|1|D | DNA (5'-D(*TP*TP*CP*CP*AP*GP*AP*AP*CP*AP*TP*GP*TP*TP*CP*TP*G P*GP*A)-3') | GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX | X-ray diffraction | 1.9 | 38 | 1996-04-03 | ||||
| 41 | 1TRO|1|I+ 1TRO|1|J | DNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3') | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-ray diffraction | 1.9 | 38 | 1994-01-31 | ||||
| 42 | 1TRO|1|K+ 1TRO|1|L | DNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3') | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-ray diffraction | 1.9 | 38 | 1994-01-31 | ||||
| 43 | 1MJO|1|F+ 1MJO|1|G | CONSENSUS DNA OPERATOR DUPLEX WITH THE CENTRAL TA STEP MUTATED TO AT | METHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO AT | X-ray diffraction | 2.1 | 38 | 1999-08-02 | ||||
| 44 | 2DGC|1|B | DNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3') | GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNA | X-ray diffraction | 2.2 | 19 | 1996-03-08 | ||||
| 45 | 1MJQ|1|E+ 1MJQ|1|F | MUTATED MET CONSENSUS OPERATOR DUPLEX | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE | X-ray diffraction | 2.4 | 38 | 1999-08-02 | ||||
| 46 | 1MJ2|1|F+ 1MJ2|1|G | DNA (5'-D(*TP*TP*AP*GP*AP*CP*GP*TP*CP*TP*AP*GP*AP*CP*GP*TP*CP*TP*A)-3') | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCE | X-ray diffraction | 2.4 | 38 | 1999-08-02 | ||||
| 47 | 1MJQ|1|K+ 1MJQ|1|L | MUTATED MET CONSENSUS OPERATOR DUPLEX | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE | X-ray diffraction | 2.4 | 38 | 1999-08-02 | ||||
| 48 | 1R4O|1|C+ 1R4O|1|D | 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*CP*TP*G)-3' | Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA | X-ray diffraction | 2.5 | 38 | 2003-10-21 | ||||
| 49 | 1B01|1|E+ 1B01|1|F | DNA (5'-D(*CP*CP*CP*GP*TP*GP*CP*AP*CP*TP*CP*AP*AP*TP*GP*CP*AP*AP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*GP*CP*AP*TP*TP*GP*AP*GP*TP*GP*CP*AP*CP*GP*G)-3') | TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX | X-ray diffraction | 2.56 | 38 | 1999-11-19 | ||||
| 50 | 1D66|1|D+ 1D66|1|E | DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*AP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*TP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3') | DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX | X-ray diffraction | 2.7 | 38 | 1992-03-06 | ||||
| 51 | 2DRP|1|B+ 2DRP|1|C | DNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*GP*GP*AP*TP*AP*AP*CP*GP*TP*C P*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*GP*TP*TP*AP*TP*CP*CP*TP*TP*AP*T P*TP*A)-3') | THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION | X-ray diffraction | 2.8 | 38 | 1994-08-31 | ||||
| 52 | 2DRP|1|E+ 2DRP|1|F | DNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*GP*GP*AP*TP*AP*AP*CP*GP*TP*C P*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*GP*TP*TP*AP*TP*CP*CP*TP*TP*AP*T P*TP*A)-3') | THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION | X-ray diffraction | 2.8 | 38 | 1994-08-31 | ||||
| 53 | 1GLU|1|C+ 1GLU|1|D | DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*C P*TP*G)-3') | CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA | X-ray diffraction | 2.9 | 38 | 1994-01-31 | ||||
| 54 | 1DGC|1|B | DNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3') | THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY | X-ray diffraction | 3 | 19 | 1994-06-22 | ||||
| 55 | 1R4R|1|C+ 1R4R|1|D | 5'-D(*CP*TP*GP*AP*GP*AP*AP*CP*AP*TP*CP*AP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*CP*A)-3' | Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA | X-ray diffraction | 3 | 38 | 2003-10-28 | ||||
| 56 | 1SRS|1|C+ 1SRS|1|W | DNA (5'-D(*CP*CP*(5IU)P*TP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*CP*CP*AP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*TP*GP*GP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*A P*AP*G)-3') | SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA | X-ray diffraction | 3.2 | 38 | 1995-07-28 | ||||
| 57 | 1ZR4|1|J+ 1ZR4|1|K | TCAGTGTCCGATAATTTAT, TTATCGGACACTG | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs | X-ray diffraction | 3.4 | 0 | 2005-08-30 | ||||
| 58 | 1ZR4|1|M+ 1ZR4|1|N | TCAGTGTCCGATAATTTAT, TTATCGGACACTG | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs | X-ray diffraction | 3.4 | 0 | 2005-08-30 | ||||
| 59 | 1ZR4|1|U+ 1ZR4|1|V | TCAGTGTCCGATAATTTAT, TTATCGGACACTG | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs | X-ray diffraction | 3.4 | 0 | 2005-08-30 | ||||
| 60 | 1ZR4|1|X+ 1ZR4|1|Y | TCAGTGTCCGATAATTTAT, TTATCGGACACTG | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs | X-ray diffraction | 3.4 | 0 | 2005-08-30 | ||||
| 61 | 1O4X|1|C+ 1O4X|1|D | 5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3' | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT | Solution NMR | 38 | 2004-01-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1H9T|1|X+ 1H9T|1|Y | FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATOR | X-RAY DIFFRACTION | 3.25 | 38 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 2 | 2DRP|1|B+ 2DRP|1|C | THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION | X-RAY DIFFRACTION | 2.8 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 3 | 2DRP|1|E+ 2DRP|1|F | THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION | X-RAY DIFFRACTION | 2.8 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 4 | 2C9L|1|A+ 2C9L|1|B | Structure of the Epstein-Barr virus ZEBRA protein | X-RAY DIFFRACTION | 2.25 | 37 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 5 | 2DGC|1|B | GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNA | X-RAY DIFFRACTION | 2.2 | 19 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 6 | 1DGC|1|B | THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY | X-RAY DIFFRACTION | 3 | 19 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 7 | 1CRX|1|D+ 1CRX|1|E | CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE I | X-RAY DIFFRACTION | 2.4 | 34 | enzyme,recombinase | ||
| 8 | 1IGN|1|C+ 1IGN|1|D | DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE | X-RAY DIFFRACTION | 2.25 | 38 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | ||
| 9 | 1IGN|1|E+ 1IGN|1|F | DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE | X-RAY DIFFRACTION | 2.25 | 37 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | ||
| 10 | 1R4O|1|C+ 1R4O|1|D | Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA | X-RAY DIFFRACTION | 2.5 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 11 | 1NKP|1|F+ 1NKP|1|G | Crystal structure of Myc-Max recognizing DNA | X-RAY DIFFRACTION | 1.8 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription | |
| 12 | 1R4R|1|C+ 1R4R|1|D | Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA | X-RAY DIFFRACTION | 3 | 38 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 13 | 1LAT|1|C+ 1LAT|1|D | GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX | X-RAY DIFFRACTION | 1.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 14 | 1D66|1|D+ 1D66|1|E | DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX | X-RAY DIFFRACTION | 2.7 | 38 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription | |
| 15 | 3KMD|1|E+ 3KMD|1|F | Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer | X-RAY DIFFRACTION | 2.15 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription | |
| 16 | 3PT6|1|C+ 3PT6|1|I | Crystal structure of mouse DNMT1(650-1602) in complex with DNA | X-RAY DIFFRACTION | 3 | 38 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 17 | 3PT6|1|D+ 3PT6|1|J | Crystal structure of mouse DNMT1(650-1602) in complex with DNA | X-RAY DIFFRACTION | 3 | 38 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 18 | 2H7H|1|X+ 2H7H|1|Y | Crystal structure of the JUN BZIP homodimer complexed with AP-1 DNA | X-RAY DIFFRACTION | 2.3 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 19 | 3PTA|1|B+ 3PTA|1|C | Crystal structure of human DNMT1(646-1600) in complex with DNA | X-RAY DIFFRACTION | 3.6 | 38 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 20 | 1GLU|1|C+ 1GLU|1|D | CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA | X-RAY DIFFRACTION | 2.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 21 | 1B01|1|E+ 1B01|1|F | TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX | X-RAY DIFFRACTION | 2.56 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 22 | 1ZR2|1|J+ 1ZR2|1|K | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAs | X-RAY DIFFRACTION | 3.9 | 32 | enzyme,recombinase | ||
| 23 | 1ZR2|1|X+ 1ZR2|1|Y | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAs | X-RAY DIFFRACTION | 3.9 | 32 | enzyme,recombinase | ||
| 24 | 1ZR4|1|X+ 1ZR4|1|Y | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs | X-RAY DIFFRACTION | 3.4 | 0 | enzyme,recombinase | ||
| 25 | 1ZR4|1|U+ 1ZR4|1|V | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs | X-RAY DIFFRACTION | 3.4 | 0 | enzyme,recombinase | ||
| 26 | 1ZR4|1|M+ 1ZR4|1|N | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs | X-RAY DIFFRACTION | 3.4 | 0 | enzyme,recombinase | ||
| 27 | 1ZR4|1|J+ 1ZR4|1|K | Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs | X-RAY DIFFRACTION | 3.4 | 0 | enzyme,recombinase | ||
| 28 | 1MJQ|1|E+ 1MJQ|1|F | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE | X-RAY DIFFRACTION | 2.4 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 29 | 1MJQ|1|K+ 1MJQ|1|L | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE | X-RAY DIFFRACTION | 2.4 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 30 | 1MJO|1|F+ 1MJO|1|G | METHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO AT | X-RAY DIFFRACTION | 2.1 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 31 | 1MJ2|1|F+ 1MJ2|1|G | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCE | X-RAY DIFFRACTION | 2.4 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 32 | 1TRO|1|K+ 1TRO|1|L | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 1.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor | |
| 33 | 1TRO|1|I+ 1TRO|1|J | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 1.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor | |
| 34 | 3KSA|1|F+ 3KSA|1|H+ 3KSA|1|E+ 3KSA|1|G | Detailed structural insight into the DNA cleavage complex of type IIA topoisomerases (cleaved form) | X-RAY DIFFRACTION | 3.3 | 36 | double helix,structure | enzyme,isomerase | |
| 35 | 2RGR|1|D+ 2RGR|1|C | Topoisomerase IIA bound to G-segment DNA | X-RAY DIFFRACTION | 3 | 34 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 36 | 3FOE|1|F+ 3FOE|1|H+ 3FOE|1|E+ 3FOE|1|G | Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases | X-RAY DIFFRACTION | 4.001 | 68 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 37 | 3FOF|1|F+ 3FOF|1|H+ 3FOF|1|E+ 3FOF|1|G | Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases | X-RAY DIFFRACTION | 4 | 68 | B-form double helix,double helix,structure | enzyme,isomerase | |
| 38 | 3K9F|1|F+ 3K9F|1|H+ 3K9F|1|E+ 3K9F|1|G | Detailed structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases | X-RAY DIFFRACTION | 2.9 | 36 | double helix,structure | enzyme,isomerase | |
| 39 | 3LTN|1|F+ 3LTN|1|H+ 3LTN|1|E+ 3LTN|1|G | Inhibitor-stabilized topoisomerase IV-DNA cleavage complex (S. pneumoniae) | X-RAY DIFFRACTION | 3.1 | 36 | double helix,structure | enzyme,isomerase | |
| 40 | 1SRS|1|C+ 1SRS|1|W | SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA | X-RAY DIFFRACTION | 3.2 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription | |
| 41 | 1J5O|1|T+ 1J5O|1|P | CRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMER | X-RAY DIFFRACTION | 3.5 | 37 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase | |
| 42 | 2HMI|1|E+ 2HMI|1|F | HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX | X-RAY DIFFRACTION | 2.8 | 37 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase | |
| 43 | 1O4X|1|C+ 1O4X|1|D | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT | SOLUTION NMR | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),HMG box,helix-turn-helix (HTH),homeodomain,other α-helix,regulatory,transcription | ||
| 44 | 2R8G|1|T+ 2R8G|1|P | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-RAY DIFFRACTION | 2.7 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 45 | 1NGM|1|C+ 1NGM|1|D | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-RAY DIFFRACTION | 2.95 | 38 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 46 | 1NGM|1|G+ 1NGM|1|H | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-RAY DIFFRACTION | 2.95 | 38 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 47 | 1NGM|1|K+ 1NGM|1|L | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-RAY DIFFRACTION | 2.95 | 38 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 48 | 1NGM|1|O+ 1NGM|1|P | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-RAY DIFFRACTION | 2.95 | 38 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 49 | 2AU0|1|J+ 2AU0|1|H | Unmodified preinsertion binary complex | X-RAY DIFFRACTION | 2.7 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 50 | 2ATL|1|E+ 2ATL|1|D | Unmodified Insertion Ternary Complex | X-RAY DIFFRACTION | 2.8 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 51 | 2ASJ|1|J+ 2ASJ|1|H | oxoG-modified Preinsertion Binary Complex | X-RAY DIFFRACTION | 2.35 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 52 | 2ASJ|1|E+ 2ASJ|1|D | oxoG-modified Preinsertion Binary Complex | X-RAY DIFFRACTION | 2.35 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 53 | 2AU0|1|E+ 2AU0|1|D | Unmodified preinsertion binary complex | X-RAY DIFFRACTION | 2.7 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 54 | 2ASD|1|J+ 2ASD|1|H | oxoG-modified Insertion Ternary Complex | X-RAY DIFFRACTION | 1.95 | 32 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 55 | 2ASD|1|E+ 2ASD|1|D | oxoG-modified Insertion Ternary Complex | X-RAY DIFFRACTION | 1.95 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 56 | 2ASL|1|J+ 2ASL|1|H | oxoG-modified Postinsertion Binary Complex | X-RAY DIFFRACTION | 2.65 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 57 | 2ASL|1|E+ 2ASL|1|D | oxoG-modified Postinsertion Binary Complex | X-RAY DIFFRACTION | 2.65 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 58 | 3GII|1|E+ 3GII|1|D | Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation | X-RAY DIFFRACTION | 2.6 | 31 | enzyme,polymerase,transferase | ||
| 59 | 3KHG|1|E+ 3KHG|1|D | Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-RAY DIFFRACTION | 2.96 | 32 | double helix,structure | enzyme,polymerase,transferase | |
| 60 | 3KHG|1|J+ 3KHG|1|H | Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-RAY DIFFRACTION | 2.96 | 18 | double helix,structure | enzyme,polymerase,transferase | |
| 61 | 2ATL|1|J+ 2ATL|1|H | Unmodified Insertion Ternary Complex | X-RAY DIFFRACTION | 2.8 | 32 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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