Equivalence class DNA_all_80105.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3OR3|1|C (rep) | 5'-D(*GP*AP*TP*CP*T)-3' | Restriction endonuclease HPY188I in complex with product DNA | X-ray diffraction | 1.95 | 0 | 2010-10-20 | ||||
| 2 | 3OR3|1|D+ 3OR3|1|F | 5'-D(*GP*TP*TP*CP*A)-3', 5'-D(P*GP*AP*TP*C)-3' | Restriction endonuclease HPY188I in complex with product DNA | X-ray diffraction | 1.95 | 0 | 2010-10-20 | ||||
| 3 | 1TEZ|1|N | 5'-D(P*GP*CP*CP*GP*A)-3' | synthetic construct | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-ray diffraction | 1.8 | 5 | 2004-12-14 | |||
| 4 | 1TEZ|1|P | 5'-D(P*GP*CP*CP*GP*A)-3' | synthetic construct | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-ray diffraction | 1.8 | 5 | 2004-12-14 | |||
| 5 | 2PJR|1|I | DNA (5'-D(*AP*CP*TP*GP*C)-3') | HELICASE PRODUCT COMPLEX | X-ray diffraction | 2.9 | 0 | 1999-04-08 | ||||
| 6 | 1DE9|1|V | 5'-d(P*(3DR)P*GP*AP*TP*C)-3' | HUMAN APE1 ENDONUCLEASE WITH BOUND ABASIC DNA AND MN2+ ION | X-ray diffraction | 3 | 0 | 2000-02-02 | ||||
| 7 | 1QPS|1|M | 5'-D(*TP*CP*GP*CP*GP*)-3' | THE CRYSTAL STRUCTURE OF A POST-REACTIVE COGNATE DNA-ECO RI COMPLEX AT 2.50 A IN THE PRESENCE OF MN2+ ION | X-ray diffraction | 2.5 | 0 | 1999-06-14 | ||||
| 8 | 1PLY|1|A+ 1PLY|1|B | DNA (5'-D(P*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*T)-3') | SODIUM IONS AND WATER MOLECULES IN THE STRUCTURE OF POLY D(A)(DOT)POLY D(T) | Fiber diffraction | 3.2 | 10 | 1995-06-03 | ||||
| 9 | 1HVN|1|D | DNA (5'-D(P*AP*CP*GP*CP*C)-3') | ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HIV-1 NUCLEOCAPSID PROTEIN: NMR STRUCTURE OF THE COMPLEX WITH THE PSI-SITE ANALOG, D/ACGCC | Solution NMR | 5 | 1994-01-31 | |||||
| 10 | 1HVO|1|D | DNA (5'-D(P*AP*CP*GP*CP*C)-3') | ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HIV-1 NUCLEOCAPSID PROTEIN: NMR STRUCTURE OF THE COMPLEX WITH THE PSI-SITE ANALOG, D/ACGCC | Solution NMR | 5 | 1994-01-31 | |||||
| 11 | 1EVM|1|M | DNA (5'-D(*AP*GP*GP*GP*T)-3') | NMR OBSERVATION OF A-TETRAD | Solution NMR | 5 | 2000-05-22 | |||||
| 12 | 1EVN|1|M | DNA (5'-D(*AP*GP*GP*GP*T)-3') | NMR OBSERVATION OF A-TETRAD | Solution NMR | 5 | 2000-05-22 | |||||
| 13 | 1EVM|1|N | DNA (5'-D(*AP*GP*GP*GP*T)-3') | NMR OBSERVATION OF A-TETRAD | Solution NMR | 5 | 2000-05-22 | |||||
| 14 | 1EVN|1|N | DNA (5'-D(*AP*GP*GP*GP*T)-3') | NMR OBSERVATION OF A-TETRAD | Solution NMR | 5 | 2000-05-22 | |||||
| 15 | 1EVM|1|O | DNA (5'-D(*AP*GP*GP*GP*T)-3') | NMR OBSERVATION OF A-TETRAD | Solution NMR | 5 | 2000-05-22 | |||||
| 16 | 1EVN|1|O | DNA (5'-D(*AP*GP*GP*GP*T)-3') | NMR OBSERVATION OF A-TETRAD | Solution NMR | 5 | 2000-05-22 | |||||
| 17 | 1EVM|1|P | DNA (5'-D(*AP*GP*GP*GP*T)-3') | NMR OBSERVATION OF A-TETRAD | Solution NMR | 5 | 2000-05-22 | |||||
| 18 | 1EVN|1|P | DNA (5'-D(*AP*GP*GP*GP*T)-3') | NMR OBSERVATION OF A-TETRAD | Solution NMR | 5 | 2000-05-22 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1QPS|1|M | THE CRYSTAL STRUCTURE OF A POST-REACTIVE COGNATE DNA-ECO RI COMPLEX AT 2.50 A IN THE PRESENCE OF MN2+ ION | X-RAY DIFFRACTION | 2.5 | 0 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 2 | 1EVM|1|O | NMR OBSERVATION OF A-TETRAD | SOLUTION NMR | 5 | quadruplex,structure | |||
| 3 | 1EVM|1|M | NMR OBSERVATION OF A-TETRAD | SOLUTION NMR | 5 | quadruplex,structure | |||
| 4 | 1EVM|1|P | NMR OBSERVATION OF A-TETRAD | SOLUTION NMR | 5 | quadruplex,structure | |||
| 5 | 1EVM|1|N | NMR OBSERVATION OF A-TETRAD | SOLUTION NMR | 5 | quadruplex,structure | |||
| 6 | 1EVN|1|M | NMR OBSERVATION OF A-TETRAD | SOLUTION NMR | 5 | quadruplex,structure | |||
| 7 | 1EVN|1|P | NMR OBSERVATION OF A-TETRAD | SOLUTION NMR | 5 | quadruplex,structure | |||
| 8 | 1EVN|1|O | NMR OBSERVATION OF A-TETRAD | SOLUTION NMR | 5 | quadruplex,structure | |||
| 9 | 1EVN|1|N | NMR OBSERVATION OF A-TETRAD | SOLUTION NMR | 5 | quadruplex,structure | |||
| 10 | 1DE9|1|V | HUMAN APE1 ENDONUCLEASE WITH BOUND ABASIC DNA AND MN2+ ION | X-RAY DIFFRACTION | 3 | 0 | enzyme,hydrolase,lyase,nuclease | ||
| 11 | 1PLY|1|A+ 1PLY|1|B | SODIUM IONS AND WATER MOLECULES IN THE STRUCTURE OF POLY D(A)(DOT)POLY D(T) | FIBER DIFFRACTION | 3.2 | 10 | B-form double helix,double helix,structure | ||
| 12 | 3OR3|1|D+ 3OR3|1|F | Restriction endonuclease HPY188I in complex with product DNA | X-RAY DIFFRACTION | 1.95 | 0 | double helix,structure | enzyme,hydrolase,nuclease | |
| 13 | 3OR3|1|C | Restriction endonuclease HPY188I in complex with product DNA | X-RAY DIFFRACTION | 1.95 | 0 | double helix,structure | enzyme,hydrolase,nuclease | |
| 14 | 1TEZ|1|N | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-RAY DIFFRACTION | 1.8 | 5 | enzyme,lyase | ||
| 15 | 1TEZ|1|P | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-RAY DIFFRACTION | 1.8 | 5 | enzyme,lyase | ||
| 16 | 2PJR|1|I | HELICASE PRODUCT COMPLEX | X-RAY DIFFRACTION | 2.9 | 0 | enzyme,helicase,hydrolase | ||
| 17 | 1HVO|1|D | ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HIV-1 NUCLEOCAPSID PROTEIN: NMR STRUCTURE OF THE COMPLEX WITH THE PSI-SITE ANALOG, D/ACGCC | SOLUTION NMR | 5 | structural,virus | |||
| 18 | 1HVN|1|D | ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HIV-1 NUCLEOCAPSID PROTEIN: NMR STRUCTURE OF THE COMPLEX WITH THE PSI-SITE ANALOG, D/ACGCC | SOLUTION NMR | 5 | structural,virus |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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