Equivalence class NR_1.5_24936.6 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8PFQ|1|A+ 8PFQ|1|B (rep) | Chains: A,B | synthetic construct | RNA structure with 1-methylpseudoridine, P1 space group | X-ray diffraction | 1.01 | 24 | 2024-01-31 | |||
| 2 | 9YDI|1|A | RNA 12-mer | synthetic construct | Dickerson dodecamer RNA duplex containing an A/G mismatch. | X-ray diffraction | 1.03 | 12 | 2026-08-05 | |||
| 3 | 6XUS|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | synthetic construct | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-ray diffraction | 1.1 | 12 | 2021-02-03 | |||
| 4 | 6XUR|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | chemical production metagenome | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-ray diffraction | 1.1 | 12 | 2020-02-19 | |||
| 5 | 8PFK|1|A | RNA (12-mer) | synthetic construct | RNA structure with 1-methylpseudoridine, C2 space group | X-ray diffraction | 1.321 | 12 | 2024-01-31 | |||
| 6 | 2Q1R|1|A | RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3') | Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch. | X-ray diffraction | 1.12 | 12 | 2007-10-30 |
Release history
| Release | 4.51 |
|---|---|
| Date | 2026-08-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9YDI|1|A | Dickerson dodecamer RNA duplex containing an A/G mismatch. | X-RAY DIFFRACTION | 1.03 | 12 | |
| 2 | 6XUS|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-RAY DIFFRACTION | 1.1 | 12 | |
| 3 | 6XUR|1|A | RNA dodecamer with a 6-hydrazino-2-aminopurine modified base | X-RAY DIFFRACTION | 1.1 | 12 | |
| 4 | 2Q1R|1|A | Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch. | X-RAY DIFFRACTION | 1.12 | 12 | |
| 5 | 8PFK|1|A | RNA structure with 1-methylpseudoridine, C2 space group | X-RAY DIFFRACTION | 1.321 | 12 | |
| 6 | 8PFQ|1|A+ 8PFQ|1|B | RNA structure with 1-methylpseudoridine, P1 space group | X-RAY DIFFRACTION | 1.01 | 24 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: