RNA 3D Hub //

Equivalence class NR_2.0_01949.7 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17KUP|1|A+ 7KUP|1|B (rep)5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(OMG))-3'synthetic construct2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.44282021-09-08
27KUK|1|A+ 7KUK|1|BRNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructHigh resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.67282021-09-08
37KUM|1|A+ 7KUM|1|B5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(LCG)-3'synthetic constructLNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.714282021-09-08
45UED|1|A+ 5UED|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-ray diffraction1.5282017-07-05
56C8J|1|A+ 6C8J|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA-activated 2-AIpG monomer complex, 15 min soakingX-ray diffraction1.5282018-05-30
68SWG|1|A+ 8SWG|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(GA3))-3')synthetic constructRNA duplex bound with GpppA dinucleotide ligandX-ray diffraction1.5282023-05-31
77KUL|1|A+ 7KUL|1|BDNA/RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*G)-3')synthetic constructDNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.64282021-09-08
86C8D|1|A+ 6C8D|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA-dGMP complex with Mg ionX-ray diffraction1.92282018-05-30
96C8I|1|A+ 6C8I|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA-activated 2-AIpG monomer complex, 5 min soakingX-ray diffraction1.77282018-05-30
105UEE|1|A+ 5UEE|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-ray diffraction1.9282017-07-05
116C8E|1|A+ 6C8E|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')synthetic constructRNA-imidazolium-bridged intermediate complex, 4h soakingX-ray diffraction1.8282018-05-30
126OWL|1|ARNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*R)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-ray diffraction2142020-02-26

Release history

Release4.0
Date2025-08-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16C8D|1|A+ 6C8D|1|BRNA-dGMP complex with Mg ionX-RAY DIFFRACTION1.9228
26C8J|1|A+ 6C8J|1|BRNA-activated 2-AIpG monomer complex, 15 min soakingX-RAY DIFFRACTION1.528
37KUL|1|A+ 7KUL|1|BDNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.6428
46C8E|1|A+ 6C8E|1|BRNA-imidazolium-bridged intermediate complex, 4h soakingX-RAY DIFFRACTION1.828
57KUP|1|A+ 7KUP|1|B2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.4428
67KUK|1|A+ 7KUK|1|BHigh resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.6728
77KUM|1|A+ 7KUM|1|BLNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.71428
85UEE|1|A+ 5UEE|1|BRNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')GX-RAY DIFFRACTION1.928
95UED|1|A+ 5UED|1|BRNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')GX-RAY DIFFRACTION1.528
106C8I|1|A+ 6C8I|1|BRNA-activated 2-AIpG monomer complex, 5 min soakingX-RAY DIFFRACTION1.7728
118SWG|1|A+ 8SWG|1|BRNA duplex bound with GpppA dinucleotide ligandX-RAY DIFFRACTION1.528
126OWL|1|ARNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION214

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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