Equivalence class NR_2.0_10157.154 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9Q87|1|b (rep) | 5S ribosomal RNA | 5S rRNA | Escherichia coli B | Bacteria | RF00001 | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | Electron microscopy | 1.55 | 120 | 2025-05-14 |
| 2 | 8B0X|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli B | Bacteria | RF00001 | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | Electron microscopy | 1.55 | 119 | 2022-11-30 |
| 3 | 8CEU|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Retapamulin and Capreomycin bound to the 50S subunit | Electron microscopy | 1.83 | 119 | 2023-07-26 |
| 4 | 8FTO|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | Electron microscopy | 1.85 | 119 | 2023-08-02 |
| 5 | 9GHE|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli K-12 | Bacteria | RF00001 | Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU) | Electron microscopy | 1.87 | 119 | 2025-03-26 |
| 6 | 9D89|1|E | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement) | Electron microscopy | 1.95 | 119 | 2025-01-22 |
| 7 | 8AYE|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 119 | 2023-03-01 |
| 8 | 7K00|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 119 | 2020-09-23 |
| 9 | 8CGD|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Clindamycin bound to the 50S subunit | Electron microscopy | 1.98 | 119 | 2023-07-26 |
| 10 | 8QOA|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 119 | 2024-03-20 |
| 11 | 8E30|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound streptogramin A analog 3142 | Electron microscopy | 1.91 | 118 | 2023-06-28 |
| 12 | 8E3O|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to solithromycin and VM1 | Electron microscopy | 1.99 | 118 | 2023-06-28 |
| 13 | 8CGV|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Tiamulin bound to the 50S subunit | Electron microscopy | 1.66 | 56 | 2023-08-02 |
| 14 | 8CGK|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Lincomycin and Avilamycin bound to the 50S subunit | Electron microscopy | 1.64 | 39 | 2023-07-19 |
| 15 | 8CAM|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Evernimicin bound to the 50S subunit | Electron microscopy | 1.86 | 34 | 2023-07-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9D89|1|E | E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement) | ELECTRON MICROSCOPY | 1.95 | 119 | |
| 2 | 8QOA|1|b | Structure of SecM-stalled Escherichia coli 70S ribosome | ELECTRON MICROSCOPY | 2 | 119 | |
| 3 | 8B0X|1|b | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | ELECTRON MICROSCOPY | 1.55 | 119 | |
| 4 | 9Q87|1|b | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | ELECTRON MICROSCOPY | 1.55 | 120 | |
| 5 | 7K00|1|b | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 119 | |
| 6 | 8FTO|1|b | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | ELECTRON MICROSCOPY | 1.85 | 119 | |
| 7 | 9GHE|1|b | Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU) | ELECTRON MICROSCOPY | 1.87 | 119 | |
| 8 | 8AYE|1|b | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | ELECTRON MICROSCOPY | 1.96 | 119 | |
| 9 | 8CGV|1|b | Tiamulin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.66 | 56 | |
| 10 | 8CEU|1|b | Retapamulin and Capreomycin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.83 | 119 | |
| 11 | 8CGD|1|b | Clindamycin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.98 | 119 | |
| 12 | 8CAM|1|b | Evernimicin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.86 | 34 | |
| 13 | 8CGK|1|b | Lincomycin and Avilamycin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.64 | 39 | |
| 14 | 8E30|1|J | E. coli 50S ribosome bound to compound streptogramin A analog 3142 | ELECTRON MICROSCOPY | 1.91 | 118 | |
| 15 | 8E3O|1|J | E. coli 50S ribosome bound to solithromycin and VM1 | ELECTRON MICROSCOPY | 1.99 | 118 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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