#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15L00|1|A+ 5L00|1|B (rep)RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSelf-complimentary RNA 15mer binding with GMP monomersX-ray diffraction1.252016-12-07
25L00|1|C+ 5L00|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructSelf-complimentary RNA 15mer binding with GMP monomersX-ray diffraction1.252016-12-07
35KRG|1|C+ 5KRG|1|DRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA 15mer duplex binding with PZG monomerX-ray diffraction1.62016-12-07
45KRG|1|A+ 5KRG|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA 15mer duplex binding with PZG monomerX-ray diffraction1.62016-12-07
56C8O|1|A+ 6C8O|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA-activated 2-AIpG monomer, 3h soakingX-ray diffraction1.852018-05-30
65V0H|1|A+ 5V0H|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA duplex with 2-MeImpG analogue bound-one binding siteX-ray diffraction1.92017-03-08
76C8N|1|A+ 6C8N|1|BRNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')synthetic constructRNA-activated 2-AIpG monomer complex, 2h soakingX-ray diffraction1.92018-05-30

Release history

Release3.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.100
Date2018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.0_16232.1NR_2.0_89026.23.24(5) 5KRG|1|A+5KRG|1|B, 5KRG|1|C+5KRG|1|D, 5L00|1|A+5L00|1|B, 5L00|1|C+5L00|1|D, 5V0H|1|A+5V0H|1|B(2) 6C8N|1|A+6C8N|1|B, 6C8O|1|A+6C8O|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.0_16232.1NR_2.0_16232.23.101(7) 5KRG|1|A+5KRG|1|B, 5KRG|1|C+5KRG|1|D, 5L00|1|A+5L00|1|B, 5L00|1|C+5L00|1|D, 5V0H|1|A+5V0H|1|B, 6C8N|1|A+6C8N|1|B, 6C8O|1|A+6C8O|1|B(0) (1) 6U6J|1|A+6U6J|1|B

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15V0H|1|A+ 5V0H|1|BRNA duplex with 2-MeImpG analogue bound-one binding siteX-RAY DIFFRACTION1.911
25KRG|1|C+ 5KRG|1|DRNA 15mer duplex binding with PZG monomerX-RAY DIFFRACTION1.611
35KRG|1|A+ 5KRG|1|BRNA 15mer duplex binding with PZG monomerX-RAY DIFFRACTION1.611
45L00|1|C+ 5L00|1|DSelf-complimentary RNA 15mer binding with GMP monomersX-RAY DIFFRACTION1.2513
55L00|1|A+ 5L00|1|BSelf-complimentary RNA 15mer binding with GMP monomersX-RAY DIFFRACTION1.2513
66C8O|1|A+ 6C8O|1|BRNA-activated 2-AIpG monomer, 3h soakingX-RAY DIFFRACTION1.8511
76C8N|1|A+ 6C8N|1|BRNA-activated 2-AIpG monomer complex, 2h soakingX-RAY DIFFRACTION1.911

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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