RNA 3D Hub //

Equivalence class NR_2.0_27023.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13LQX|1|B (rep)SRP RNASRP ribonucleoprotein core complexed with cobalt hexammineX-ray diffraction1.93492010-03-02
21HQ1|1|B4.5S RNA DOMAIN IVSTRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLEX-ray diffraction1.52492001-01-03
32PXE|1|B4.5 S RNAVariant 4 of Ribonucleoprotein Core of the E. Coli Signal Recognition ParticleX-ray diffraction2492007-08-07
42PXD|1|B4.5 S RNAVariant 1 of Ribonucleoprotein Core of the E. Coli Signal Recognition ParticleX-ray diffraction2492007-08-07
52PXF|1|B4.5 S RNAVariant 5 of Ribonucleoprotein Core of the E. Coli Signal Recognition ParticleX-ray diffraction2492007-08-07
62PXV|1|B4.5 S RNAEscherichia coliVariant 6 of Ribonucleoprotein Core of the E. Coli Signal Recognition ParticleX-ray diffraction2492007-08-07
71DUL|1|B4.5 S RNA DOMAIN IVsynthetic constructSTRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLEX-ray diffraction1.8492000-02-28

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
13LQX|1|BSRP ribonucleoprotein core complexed with cobalt hexammineX-RAY DIFFRACTION1.9349
21DUL|1|BSTRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLEX-RAY DIFFRACTION1.849
31HQ1|1|BSTRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLEX-RAY DIFFRACTION1.5249
42PXE|1|BVariant 4 of Ribonucleoprotein Core of the E. Coli Signal Recognition ParticleX-RAY DIFFRACTION249
52PXD|1|BVariant 1 of Ribonucleoprotein Core of the E. Coli Signal Recognition ParticleX-RAY DIFFRACTION249
62PXF|1|BVariant 5 of Ribonucleoprotein Core of the E. Coli Signal Recognition ParticleX-RAY DIFFRACTION249
72PXV|1|BVariant 6 of Ribonucleoprotein Core of the E. Coli Signal Recognition ParticleX-RAY DIFFRACTION249

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

3LQX|1|B:3LQX|1|B = 03LQX|1|B:1DUL|1|B = 0.06813LQX|1|B:1HQ1|1|B = 0.07143LQX|1|B:2PXE|1|B = 0.12343LQX|1|B:2PXD|1|B = 0.11353LQX|1|B:2PXF|1|B not available3LQX|1|B:2PXV|1|B not available1DUL|1|B:3LQX|1|B = 0.06811DUL|1|B:1DUL|1|B = 01DUL|1|B:1HQ1|1|B = 0.02141DUL|1|B:2PXE|1|B = 0.12081DUL|1|B:2PXD|1|B = 0.11521DUL|1|B:2PXF|1|B not available1DUL|1|B:2PXV|1|B not available1HQ1|1|B:3LQX|1|B = 0.07141HQ1|1|B:1DUL|1|B = 0.02141HQ1|1|B:1HQ1|1|B = 01HQ1|1|B:2PXE|1|B = 0.11531HQ1|1|B:2PXD|1|B = 0.11331HQ1|1|B:2PXF|1|B not available1HQ1|1|B:2PXV|1|B not available2PXE|1|B:3LQX|1|B = 0.12342PXE|1|B:1DUL|1|B = 0.12082PXE|1|B:1HQ1|1|B = 0.11532PXE|1|B:2PXE|1|B = 02PXE|1|B:2PXD|1|B = 0.10572PXE|1|B:2PXF|1|B = 0.11102PXE|1|B:2PXV|1|B not available2PXD|1|B:3LQX|1|B = 0.11352PXD|1|B:1DUL|1|B = 0.11522PXD|1|B:1HQ1|1|B = 0.11332PXD|1|B:2PXE|1|B = 0.10572PXD|1|B:2PXD|1|B = 02PXD|1|B:2PXF|1|B = 0.05692PXD|1|B:2PXV|1|B = 0.12392PXF|1|B:3LQX|1|B not available2PXF|1|B:1DUL|1|B not available2PXF|1|B:1HQ1|1|B not available2PXF|1|B:2PXE|1|B = 0.11102PXF|1|B:2PXD|1|B = 0.05692PXF|1|B:2PXF|1|B = 02PXF|1|B:2PXV|1|B = 0.11072PXV|1|B:3LQX|1|B not available2PXV|1|B:1DUL|1|B not available2PXV|1|B:1HQ1|1|B not available2PXV|1|B:2PXE|1|B not available2PXV|1|B:2PXD|1|B = 0.12392PXV|1|B:2PXF|1|B = 0.11072PXV|1|B:2PXV|1|B = 03LQX|1|B1DUL|1|B1HQ1|1|B2PXE|1|B2PXD|1|B2PXF|1|B2PXV|1|BDiscrepancy0.000.020.040.060.080.100.12

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