Equivalence class NR_2.0_35542.162 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9GHE|1|Z (rep) | Transfer RNA | mRNA, tRNA | Escherichia coli K-12 | Bacteria | RF00005 | Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU) | Electron microscopy | 1.87 | 76 | 2025-03-26 |
| 2 | 8B0X|1|Z | Transfer RNA | mRNA, P-site tRNA | Escherichia coli B | Bacteria | RF00005 | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | Electron microscopy | 1.55 | 75 | 2022-11-30 |
| 3 | 9Q87|1|Z | Transfer RNA | mRNA, P-site tRNA | Escherichia coli B | Bacteria | RF00005 | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | Electron microscopy | 1.55 | 77 | 2025-05-14 |
| 4 | 9SYH|1|Z | Transfer RNA | mRNA, tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome from deltaRlmE strain | Electron microscopy | 1.89 | 73 | 2026-03-18 |
| 5 | 9T0Y|1|Z | Transfer RNA | mRNA, tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome from delta-9 strain | Electron microscopy | 1.87 | 73 | 2026-03-18 |
| 6 | 8FTO|1|Z | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | Electron microscopy | 1.85 | 76 | 2023-08-02 |
| 7 | 7K00|1|Z | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 76 | 2020-09-23 |
| 8 | 9T6M|1|Z | Transfer RNA | mRNA, tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome from delta-10 strain | Electron microscopy | 1.87 | 73 | 2026-03-18 |
| 9 | 9SYH|1|5 | Transfer RNA | tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome from deltaRlmE strain | Electron microscopy | 1.89 | 71 | 2026-03-18 |
| 10 | 9T0Y|1|5 | Transfer RNA | tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome from delta-9 strain | Electron microscopy | 1.87 | 71 | 2026-03-18 |
| 11 | 9T6M|1|5 | Transfer RNA | tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome from delta-10 strain | Electron microscopy | 1.87 | 71 | 2026-03-18 |
| 12 | 8CCS|1|Cc | Transfer RNA | Messenger RNA, Transfer RNA fMet | Escherichia coli | Bacteria | RF00005 | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | Electron microscopy | 1.97 | 77 | 2023-09-20 |
| 13 | 8AYE|1|Z | Transfer RNA | mRNA, P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 76 | 2023-03-01 |
Release history
| Release | 4.31 |
|---|---|
| Date | 2026-03-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9Q87|1|Z | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | ELECTRON MICROSCOPY | 1.55 | 77 | |
| 2 | 8B0X|1|Z | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | ELECTRON MICROSCOPY | 1.55 | 75 | |
| 3 | 9SYH|1|Z | E. coli 70S ribosome from deltaRlmE strain | ELECTRON MICROSCOPY | 1.89 | 73 | |
| 4 | 9T0Y|1|Z | E. coli 70S ribosome from delta-9 strain | ELECTRON MICROSCOPY | 1.87 | 73 | |
| 5 | 9T6M|1|Z | E. coli 70S ribosome from delta-10 strain | ELECTRON MICROSCOPY | 1.87 | 73 | |
| 6 | 7K00|1|Z | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 76 | |
| 7 | 8AYE|1|Z | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | ELECTRON MICROSCOPY | 1.96 | 76 | |
| 8 | 9GHE|1|Z | Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU) | ELECTRON MICROSCOPY | 1.87 | 76 | |
| 9 | 8FTO|1|Z | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | ELECTRON MICROSCOPY | 1.85 | 76 | |
| 10 | 9T6M|1|5 | E. coli 70S ribosome from delta-10 strain | ELECTRON MICROSCOPY | 1.87 | 71 | |
| 11 | 9SYH|1|5 | E. coli 70S ribosome from deltaRlmE strain | ELECTRON MICROSCOPY | 1.89 | 71 | |
| 12 | 9T0Y|1|5 | E. coli 70S ribosome from delta-9 strain | ELECTRON MICROSCOPY | 1.87 | 71 | |
| 13 | 8CCS|1|Cc | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | ELECTRON MICROSCOPY | 1.97 | 77 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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