NR_2.0_39197.2

Members (95)
History
Heat map

#	IFE	Organism	Title	Method	Res. Å	Date
1	157D\|A (rep)		CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS	X-ray diffraction	1.8	1994-05-31
2	17RA\|A		BRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURES	Solution NMR		1999-04-20
3	1A34\|B		SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX	X-ray diffraction	1.81	1998-04-29
4	1AC3\|A		SOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURES	Solution NMR		1997-06-16
5	1AL5\|A	synthetic construct	A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES	Solution NMR		1997-12-17
6	1CX5\|A		ANTISENSE DNA/RNA HYBRID CONTAINING MODIFIED BACKBONE	Solution NMR		1999-09-14
7	1DI2\|C		CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONS	X-ray diffraction	1.9	1999-12-02
8	1DRR\|A		DNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH DNA STRAND, NMR, 10 STRUCTURES	Solution NMR		1998-04-22
9	1EFO\|B		CRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG)	X-ray diffraction	2.3	2000-05-29
10	1FIX\|A		THE STRUCTURE OF AN RNA/DNA HYBRID: A SUBSTRATE OF THE RIBONUCLEASE ACTIVITY OF HIV-1 REVERSE TRANSCRIPTASE	X-ray diffraction	2.3	1996-12-11
11	1G4Q\|A		RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG	X-ray diffraction	1.15	2003-07-08
12	1JB8\|A		The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation	X-ray diffraction	2.38	2003-07-01
13	1OO7\|A		DNA.RNA HYBRID DUPLEX CONTAINING A 5-PROPYNE DNA STRAND AND PURINE-RICH RNA STRAND, NMR, 4 STRUCTURES	Solution NMR		2003-11-11
14	1PJG\|A		RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG	X-ray diffraction	1.15	2003-12-09
15	1PJO\|A		Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT	X-ray diffraction	1.1	2003-12-09
16	1R9S\|R		RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE	X-ray diffraction	4.25	2004-11-16
17	1R9T\|R		RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE	X-ray diffraction	3.5	2004-11-16
18	1RC7\|B		Crystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom Resolution	X-ray diffraction	2.15	2004-03-30
19	1RNA\|A		CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2	X-ray diffraction	2.25	1991-04-15
20	1RRD\|A		DNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH RNA STRAND, NMR, 10 STRUCTURES	Solution NMR		1998-04-22
21	1RRR\|A		RNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURES	Solution NMR		1998-04-22
22	1SFO\|R		RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX	X-ray diffraction	3.61	2004-03-02
23	1Y1W\|P		Complete RNA Polymerase II elongation complex	X-ray diffraction	4	2005-01-04
24	1Y77\|P		Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP	X-ray diffraction	4.5	2005-01-04
25	1YY0\|A		Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch	X-ray diffraction	3.2	2005-10-18
26	1YYK\|C		Crystal structure of RNase III from Aquifex Aeolicus complexed with double-stranded RNA at 2.5-angstrom resolution	X-ray diffraction	2.5	2005-11-22
27	1YYO\|C		Crystal structure of RNase III mutant E110K from Aquifex aeolicus complexed with double-stranded RNA at 2.9-Angstrom Resolution	X-ray diffraction	2.9	2005-11-22
28	1YYW\|E		Crystal structure of RNase III from Aquifex aeolicus complexed with double stranded RNA at 2.8-Angstrom Resolution	X-ray diffraction	2.8	2005-11-22
29	1YZD\|A		Crystal structure of an RNA duplex containing a site specific 2'-amine substitution at a C-G Watson-Crick base pair	X-ray diffraction	2.35	2005-10-18
30	1Z79\|A		Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)	X-ray diffraction	2.55	2005-10-18
31	1Z7F\|A		Crystal structure of 16 base pair RNA duplex containing a C-A mismatch	X-ray diffraction	2.1	2005-10-18
32	1ZBI\|C		Bacillus halodurans RNase H catalytic domain mutant D132N in complex with 12-mer RNA/DNA hybrid	X-ray diffraction	1.85	2005-07-12
33	1ZBL\|C		Bacillus halodurans RNase H catalytic domain mutant D192N in complex with 12-mer RNA/DNA hybrid	X-ray diffraction	2.2	2005-07-12
34	205D\|A		STRUCTURE OF AN RNA DOUBLE HELIX INCLUDING URACIL-URACIL BASE PAIRS IN AN INTERNAL LOOP	X-ray diffraction	2.64	1995-09-15
35	219D\|A		DNA/RNA HYBRID DUPLEX (5'-D(GPCPTPAPTPAPAPSTPGPG)-3')(DOT) (5'-R(CPCPAPUPUPAPUPAPGPC)-3') WITH A PHOSPHOROTHIOATE MOIETY	Solution NMR		1995-10-15
36	280D\|A		THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITES	X-ray diffraction	2.4	1996-09-30
37	2E2H\|R		RNA polymerase II elongation complex at 5 mM Mg2+ with GTP	X-ray diffraction	3.95	2006-12-12
38	2E2I\|R		RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP	X-ray diffraction	3.41	2006-12-19
39	2G92\|A		Crystal Structure Analysis of the RNA Dodecamer CGC-(NF2)-AAUUAGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)	X-ray diffraction	1.61	2006-04-18
40	2H1M\|A		Synthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAs	X-ray diffraction	2.9	2006-07-18
41	2JA5\|P	synthetic construct	CPD lesion containing RNA Polymerase II elongation complex A	X-ray diffraction	3.8	2007-02-20
42	2JA6\|P	synthetic construct	CPD lesion containing RNA Polymerase II elongation complex B	X-ray diffraction	4	2007-02-20
43	2JA7\|3	synthetic construct	CPD lesion containing RNA Polymerase II elongation complex C	X-ray diffraction	3.8	2007-02-20
44	2JA8\|P	synthetic construct	CPD lesion containing RNA Polymerase II elongation complex D	X-ray diffraction	3.8	2007-02-20
45	2JXQ\|A		NMR structure of RNA duplex	Solution NMR		2008-05-20
46	2JXS\|A		NMR structure of RNA duplex containing single adenosine bulge	Solution NMR		2008-05-20
47	2KP3\|A		Structure of ANA-RNA hybrid duplex	Solution NMR		2010-02-09
48	2KP4\|A		Structure of 2'F-ANA/RNA hybrid duplex	Solution NMR		2010-02-09
49	2KXZ\|A		The Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAA	Solution NMR		2010-06-02
50	2KY0\|A		The Structure of RNA Internal Loops with Tandem AG Pairs: 5'GAGC/3'CGAG	Solution NMR		2010-06-02
51	2KY1\|A		The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGA/3'AGAU	Solution NMR		2010-06-02
52	2NUG\|C		Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 1.7-Angstrom Resolution	X-ray diffraction	1.7	2007-11-20
53	2NVQ\|R	synthetic construct	RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP	X-ray diffraction	2.9	2006-12-12
54	2NVT\|R		RNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPP	X-ray diffraction	3.36	2006-12-12
55	2NVX\|R		RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP	X-ray diffraction	3.6	2006-12-19
56	2NVZ\|R	synthetic construct	RNA Polymerase II elongation complex with UTP, updated 11/2006	X-ray diffraction	4.3	2006-12-19
57	2Q1O\|A		Crystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)	X-ray diffraction	1.1	2007-10-30
58	2Q1R\|A		Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch.	X-ray diffraction	1.12	2007-10-30
59	2QK9\|B		Human RNase H catalytic domain mutant D210N in complex with 18-mer RNA/DNA hybrid	X-ray diffraction	2.55	2007-11-13
60	2QKB\|C		Human RNase H catalytic domain mutant D210N in complex with 20-mer RNA/DNA hybrid	X-ray diffraction	2.4	2007-11-13
61	2QKK\|C		Human RNase H catalytic domain mutant D210N in complex with 14-mer RNA/DNA hybrid	X-ray diffraction	3.2	2007-11-13
62	2R7Z\|P		Cisplatin lesion containing RNA polymerase II elongation complex	X-ray diffraction	3.8	2007-11-20
63	2R92\|T		Elongation complex of RNA polymerase II with artificial RdRP scaffold	X-ray diffraction	3.8	2007-11-27
64	2VUM\|P	synthetic construct	Alpha-amanitin inhibited complete RNA polymerase II elongation complex	X-ray diffraction	3.4	2008-06-17
65	2YU9\|R	synthetic construct	RNA polymerase II elongation complex in 150 mm MG+2 with UTP	X-ray diffraction	3.4	2007-04-24
66	353D\|A		CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE	X-ray diffraction	2.4	1997-11-10
67	397D\|A		A 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS-ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION-DEPENDENT BULGE CONFORMATION	X-ray diffraction	1.3	1998-09-11
68	3ADL\|B		Structure of TRBP2 and its molecule implications for miRNA processing	X-ray diffraction	2.2	2010-05-26
69	3BSU\|D		Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA	X-ray diffraction	2.1	2008-03-25
70	3CGP\|B		X-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplex bound to iodide ions	X-ray diffraction	1.57	2008-07-01
71	3CGQ\|B		X-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplex	X-ray diffraction	2.55	2008-07-01
72	3CGR\|B		X-ray structure containing the pseudouridylated U2 snRNA and intron branch site consensus sequences	X-ray diffraction	2.1	2008-07-01
73	3CGS\|B		X-ray structure containing the pseudouridylated U2 snRNA and mammalian intron branch site consensus sequences	X-ray diffraction	1.65	2008-07-01
74	3GTG\|R		Backtracked RNA polymerase II complex with 12mer RNA	X-ray diffraction	3.78	2009-06-09
75	3GTJ\|R		Backtracked RNA polymerase II complex with 13mer RNA	X-ray diffraction	3.42	2009-06-09
76	3GTL\|R		Backtracked RNA polymerase II complex with 13mer with G<>U mismatch	X-ray diffraction	3.38	2009-06-09
77	3GTM\|M	synthetic construct	Co-complex of Backtracked RNA polymerase II with TFIIS	X-ray diffraction	3.8	2009-06-09
78	3GTO\|R		Backtracked RNA polymerase II complex with 15mer RNA	X-ray diffraction	4	2009-06-09
79	3GTP\|R		Backtracked RNA polymerase II complex with 24mer RNA	X-ray diffraction	3.9	2009-06-09
80	3GTQ\|R		Backtracked RNA polymerase II complex induced by damage	X-ray diffraction	3.8	2009-06-09
81	3HOU\|3		Complete RNA polymerase II elongation complex I with a T-U mismatch	X-ray diffraction	3.2	2009-07-28
82	3HOV\|P		Complete RNA polymerase II elongation complex II	X-ray diffraction	3.5	2009-07-28
83	3HOW\|3		Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridine	X-ray diffraction	3.6	2009-07-28
84	3HOX\|P		Complete RNA polymerase II elongation complex V	X-ray diffraction	3.65	2009-07-28
85	3HOY\|P		Complete RNA polymerase II elongation complex VI	X-ray diffraction	3.4	2009-07-28
86	3HOZ\|P		Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanine	X-ray diffraction	3.65	2009-07-28
87	3I4M\|P		8-oxoguanine containing RNA polymerase II elongation complex D	X-ray diffraction	3.7	2009-09-08
88	3I4N\|P		8-oxoguanine containing RNA polymerase II elongation complex E	X-ray diffraction	3.9	2009-09-08
89	3LRN\|C		Crystal structure of human RIG-I CTD bound to a 14 bp GC 5' ppp dsRNA	X-ray diffraction	2.6	2010-06-02
90	3M3Y\|R		RNA polymerase II elongation complex C	X-ray diffraction	3.18	2010-05-12
91	3M4O\|R		RNA polymerase II elongation complex B	X-ray diffraction	3.57	2010-05-12
92	3NCU\|C		Structural and functional insights into pattern recognition by the innate immune receptor RIG-I	X-ray diffraction	2.55	2010-06-30
93	3OG8\|C		Crystal structure of human RIG-I CTD bound to a 14-bp blunt-ended dsRNA	X-ray diffraction	2.4	2010-11-03
94	404D\|A		CRYSTAL STRUCTURE OF THE RNA/DNA HYBRID R(GAAGAGAAGC). D(GCTTCTCTTC)	X-ray diffraction	2.5	1998-12-14
95	405D\|A		STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES	X-ray diffraction	2.5	1999-01-13

Release history

Release	0.17	0.18
Date	2011-05-14	2011-05-21

Parents

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	Length

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_2.0_39197.2 Obsolete

Release history

Parents

Children