Equivalence class NR_2.0_56726.146 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9Q87|1|A (rep) | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli B | Bacteria | RF00177 | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | Electron microscopy | 1.55 | 1533 | 2025-05-14 |
| 2 | 8B0X|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli B | Bacteria | RF00177 | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | Electron microscopy | 1.55 | 1500 | 2022-11-30 |
| 3 | 8FTO|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | Electron microscopy | 1.85 | 1519 | 2023-08-02 |
| 4 | 9GHE|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli K-12 | Bacteria | RF00177 | Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU) | Electron microscopy | 1.87 | 1514 | 2025-03-26 |
| 5 | 8AYE|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 1519 | 2023-03-01 |
| 6 | 7K00|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 1519 | 2020-09-23 |
| 7 | 8QOA|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli BW25113 | Bacteria | RF00177 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 1513 | 2024-03-20 |
| 8 | 8CGJ|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli BW25113 | Bacteria | RF00177 | Streptomycin bound to the 30S body | Electron microscopy | 1.79 | 1130 | 2023-07-26 |
| 9 | 8CGU|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli BW25113 | Bacteria | RF00177 | Gentamicin bound to the 30S body | Electron microscopy | 1.89 | 1047 | 2023-07-26 |
| 10 | 9FDA|1|B | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli | Bacteria | RF00177 | Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex | Electron microscopy | 2 | 1051 | 2025-03-19 |
| 11 | 8CF1|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli BW25113 | Bacteria | RF00177 | Tetracycline bound to the 30S head | Electron microscopy | 1.82 | 485 | 2023-07-26 |
| 12 | 8CGI|1|A | Small subunit ribosomal RNA | 16S rRNA | Escherichia coli BW25113 | Bacteria | RF00177 | Pentacycline TP038 bound to the 30S head | Electron microscopy | 1.89 | 460 | 2023-07-26 |
Release history
| Release | 3.399 |
|---|---|
| Date | 2025-08-06 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8CGU|1|A | Gentamicin bound to the 30S body | ELECTRON MICROSCOPY | 1.89 | 1047 | |
| 2 | 8QOA|1|A | Structure of SecM-stalled Escherichia coli 70S ribosome | ELECTRON MICROSCOPY | 2 | 1513 | |
| 3 | 9GHE|1|A | Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU) | ELECTRON MICROSCOPY | 1.87 | 1514 | |
| 4 | 8FTO|1|A | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | ELECTRON MICROSCOPY | 1.85 | 1519 | |
| 5 | 8AYE|1|A | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | ELECTRON MICROSCOPY | 1.96 | 1519 | |
| 6 | 9Q87|1|A | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | ELECTRON MICROSCOPY | 1.55 | 1533 | |
| 7 | 8B0X|1|A | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | ELECTRON MICROSCOPY | 1.55 | 1500 | |
| 8 | 8CGI|1|A | Pentacycline TP038 bound to the 30S head | ELECTRON MICROSCOPY | 1.89 | 460 | |
| 9 | 8CF1|1|A | Tetracycline bound to the 30S head | ELECTRON MICROSCOPY | 1.82 | 485 | |
| 10 | 7K00|1|A | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 1519 | |
| 11 | 8CGJ|1|A | Streptomycin bound to the 30S body | ELECTRON MICROSCOPY | 1.79 | 1130 | |
| 12 | 9FDA|1|B | Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex | ELECTRON MICROSCOPY | 2 | 1051 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: