Equivalence class NR_2.0_65061.39 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8QYX|1|A2+ 8QYX|1|C2 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human 60S ribosomal subunit | Electron microscopy | 1.78 | 3862 | 2024-12-11 |
| 2 | 8GLP|1|L5+ 8GLP|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | Electron microscopy | 1.67 | 3702 | 2023-04-19 |
| 3 | 8QOI|1|L5+ 8QOI|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA (3773-MER), 5.8S rRNA (156-MER) | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA | Electron microscopy | 1.9 | 3929 | 2024-06-12 |
| 4 | 8YOO|1|L5+ 8YOO|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline | Electron microscopy | 2 | 3826 | 2024-07-10 |
| 5 | 8A3D|1|A+ 8A3D|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound | Electron microscopy | 1.67 | 3451 | 2023-03-08 |
| 6 | 9C3H|1|L5+ 9C3H|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site. | Electron microscopy | 2 | 3679 | 2024-12-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8QOI|1|L5+ 8QOI|1|L8 | Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA | ELECTRON MICROSCOPY | 1.9 | 3929 | |
| 2 | 9C3H|1|L5+ 9C3H|1|L1 | Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site. | ELECTRON MICROSCOPY | 2 | 3679 | |
| 3 | 8YOO|1|L5+ 8YOO|1|L8 | Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline | ELECTRON MICROSCOPY | 2 | 3826 | |
| 4 | 8GLP|1|L5+ 8GLP|1|L8 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | ELECTRON MICROSCOPY | 1.67 | 3702 | |
| 5 | 8A3D|1|A+ 8A3D|1|C | Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound | ELECTRON MICROSCOPY | 1.67 | 3451 | |
| 6 | 8QYX|1|A2+ 8QYX|1|C2 | Human 60S ribosomal subunit | ELECTRON MICROSCOPY | 1.78 | 3862 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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