#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16Q1H|1|D (rep)RNA (5'-R(P*AP*AP*A)-3')Pseudomonas aeruginosaStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-ray diffraction1.452019-12-25
26Q1H|1|HRNA (5'-R(P*AP*AP*A)-3')Pseudomonas aeruginosaStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-ray diffraction1.452019-12-25
36P7P|1|FCyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-ray diffraction1.662019-12-25
46P7P|1|ECyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-ray diffraction1.662019-12-25
56P7P|1|DCyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-ray diffraction1.662019-12-25
67ZGV|1|DRNA (5'-R(P*AP*AP*A)-3')SerratiaSerratia NucC bound to cA3X-ray diffraction1.482022-10-26
77SOQ|1|BRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-ray diffraction1.152022-08-03
87SOR|1|DRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-ray diffraction1.352022-08-03
97SOR|1|BRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-ray diffraction1.352022-08-03
106YWO|1|FRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.92020-08-05
116YWO|1|ERNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.92020-08-05
126YWO|1|KRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.92020-08-05
136YWO|1|IRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.92020-08-05
143GPQ|1|ERNA (5'-R(*AP*AP*A)-3')Crystal structure of macro domain of Chikungunya virus in complex with RNAX-ray diffraction22009-07-21
153GPQ|1|FRNA (5'-R(*AP*AP*A)-3')Crystal structure of macro domain of Chikungunya virus in complex with RNAX-ray diffraction22009-07-21

Release history

Release3.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.341
Date2024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17SOQ|1|BLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.153
27SOR|1|BLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.353
37SOR|1|DLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.353
47ZGV|1|DSerratia NucC bound to cA3X-RAY DIFFRACTION1.483
56P7P|1|FStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
66P7P|1|EStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
76Q1H|1|HStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.453
86Q1H|1|DStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.453
96P7P|1|DStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
106YWO|1|ECutA in complex with A3 RNAX-RAY DIFFRACTION1.93
116YWO|1|ICutA in complex with A3 RNAX-RAY DIFFRACTION1.93
126YWO|1|FCutA in complex with A3 RNAX-RAY DIFFRACTION1.93
136YWO|1|KCutA in complex with A3 RNAX-RAY DIFFRACTION1.93
143GPQ|1|FCrystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22
153GPQ|1|ECrystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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