#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15TDJ|1|A (rep)RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3')synthetic constructRNA decamer duplex with four 2'-5'-linkagesX-ray diffraction1.52017-01-11
25TDJ|1|BRNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3')synthetic constructRNA decamer duplex with four 2'-5'-linkagesX-ray diffraction1.52017-01-11
34MSR|1|A+ 4MSR|1|BRNA 10mer duplex with six 2'-5'-linkagesRNA 10mer duplex with six 2'-5'-linkagesX-ray diffraction1.22014-02-12
45TDK|1|A+ 5TDK|1|BRNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3')synthetic constructRNA decamer duplex with eight 2'-5'-linkagesX-ray diffraction1.432017-01-11
54MS9|1|ANative RNA duplex 10merNative RNA-10mer Structure: ccggcgccggX-ray diffraction1.322014-02-12
66WY3|1|A+ 6WY3|1|BRNA (5'-R(*CP*CP*GP*GP*(LV2)P*GP*CP*CP*GP*G)-3')synthetic constructCrystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; P212121 formX-ray diffraction1.652020-09-02
76WY3|1|C+ 6WY3|1|DRNA (5'-R(*CP*CP*GP*GP*(LV2)P*GP*CP*CP*GP*G)-3')synthetic constructCrystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; P212121 formX-ray diffraction1.652020-09-02
84MSB|1|A+ 4MSB|1|BRNA 10mer duplex with two 2'-5'-linkagesRNA 10mer duplex with two 2'-5'-linkagesX-ray diffraction1.552014-02-12
94MSB|1|C+ 4MSB|1|DRNA 10mer duplex with two 2'-5'-linkagesRNA 10mer duplex with two 2'-5'-linkagesX-ray diffraction1.552014-02-12
106WY2|1|ARNA-10mer: CCGG(4-methyl-C)GCCGGsynthetic constructCrystal structure of RNA-10mer: CCGG(N4-methyl-C)GCCGGX-ray diffraction1.932020-09-02
116WY2|1|B+ 6WY2|1|CRNA-10mer: CCGG(4-methyl-C)GCCGGsynthetic constructCrystal structure of RNA-10mer: CCGG(N4-methyl-C)GCCGGX-ray diffraction1.932020-09-02
124MSB|1|E+ 4MSB|1|FRNA 10mer duplex with two 2'-5'-linkagesRNA 10mer duplex with two 2'-5'-linkagesX-ray diffraction1.552014-02-12
136WY2|1|D+ 6WY2|1|ERNA-10mer: CCGG(4-methyl-C)GCCGGsynthetic constructCrystal structure of RNA-10mer: CCGG(N4-methyl-C)GCCGGX-ray diffraction1.932020-09-02
146Z18|1|A+ 6Z18|1|BRNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGGsynthetic constructCrystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; R32 formX-ray diffraction1.812020-09-02
15100D|1|ADNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3')CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRINGX-ray diffraction1.91995-03-31
16100D|1|A+ 100D|1|BDNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3')CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRINGX-ray diffraction1.91995-03-31
17100D|1|BDNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3')CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRINGX-ray diffraction1.91995-03-31
18161D|1|BDNA/RNA (5'-D(*CP*CP*GP*GP*CP*)-R(*GP*)-D(*CP*CP*GP*G)-3')A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLETX-ray diffraction1.91994-05-18
19161D|1|ADNA/RNA (5'-D(*CP*CP*GP*GP*CP*)-R(*GP*)-D(*CP*CP*GP*G)-3')A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLETX-ray diffraction1.91994-05-18
20394D|1|A+ 394D|1|BDNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP*GP)-D(*CP*CP*GP*G)-3')CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMERS D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)X-ray diffraction1.91998-05-01
21393D|1|ADNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3')synthetic constructCRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)X-ray diffraction21998-05-01
22393D|1|BDNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3')synthetic constructCRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)X-ray diffraction21998-05-01

Release history

Release3.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.364
Date2024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16WY3|1|C+ 6WY3|1|DCrystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; P212121 formX-RAY DIFFRACTION1.659
26WY3|1|A+ 6WY3|1|BCrystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; P212121 formX-RAY DIFFRACTION1.659
36WY2|1|ACrystal structure of RNA-10mer: CCGG(N4-methyl-C)GCCGGX-RAY DIFFRACTION1.939
46WY2|1|B+ 6WY2|1|CCrystal structure of RNA-10mer: CCGG(N4-methyl-C)GCCGGX-RAY DIFFRACTION1.939
56WY2|1|D+ 6WY2|1|ECrystal structure of RNA-10mer: CCGG(N4-methyl-C)GCCGGX-RAY DIFFRACTION1.939
64MS9|1|ANative RNA-10mer Structure: ccggcgccggX-RAY DIFFRACTION1.3210
75TDJ|1|ARNA decamer duplex with four 2'-5'-linkagesX-RAY DIFFRACTION1.510
85TDJ|1|BRNA decamer duplex with four 2'-5'-linkagesX-RAY DIFFRACTION1.510
94MSB|1|C+ 4MSB|1|DRNA 10mer duplex with two 2'-5'-linkagesX-RAY DIFFRACTION1.5510
104MSB|1|A+ 4MSB|1|BRNA 10mer duplex with two 2'-5'-linkagesX-RAY DIFFRACTION1.5510
114MSR|1|A+ 4MSR|1|BRNA 10mer duplex with six 2'-5'-linkagesX-RAY DIFFRACTION1.212
125TDK|1|A+ 5TDK|1|BRNA decamer duplex with eight 2'-5'-linkagesX-RAY DIFFRACTION1.4310
134MSB|1|E+ 4MSB|1|FRNA 10mer duplex with two 2'-5'-linkagesX-RAY DIFFRACTION1.5510
146Z18|1|A+ 6Z18|1|BCrystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; R32 formX-RAY DIFFRACTION1.819
15100D|1|ACRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRINGX-RAY DIFFRACTION1.92
16100D|1|A+ 100D|1|BCRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRINGX-RAY DIFFRACTION1.92
17100D|1|BCRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRINGX-RAY DIFFRACTION1.92
18161D|1|AA SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLETX-RAY DIFFRACTION1.91
19393D|1|BCRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)X-RAY DIFFRACTION21
20161D|1|BA SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLETX-RAY DIFFRACTION1.91
21394D|1|A+ 394D|1|BCRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMERS D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)X-RAY DIFFRACTION1.92
22393D|1|ACRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)X-RAY DIFFRACTION21

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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