Equivalence class NR_2.0_83717.119 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8B0X|1|a (rep) | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli B | Bacteria | RF02541 | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | Electron microscopy | 1.55 | 2748 | 2022-11-30 |
| 2 | 8CGK|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Lincomycin and Avilamycin bound to the 50S subunit | Electron microscopy | 1.64 | 2699 | 2023-07-19 |
| 3 | 8E30|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin A analog 3142 | Electron microscopy | 1.91 | 2898 | 2023-06-28 |
| 4 | 8CEU|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Retapamulin and Capreomycin bound to the 50S subunit | Electron microscopy | 1.83 | 2753 | 2023-07-26 |
| 5 | 8E3O|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to solithromycin and VM1 | Electron microscopy | 1.99 | 2897 | 2023-06-28 |
| 6 | 8CAM|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Evernimicin bound to the 50S subunit | Electron microscopy | 1.86 | 2690 | 2023-07-26 |
| 7 | 8AYE|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 2753 | 2023-03-01 |
| 8 | 7K00|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 2753 | 2020-09-23 |
| 9 | 8CGD|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Clindamycin bound to the 50S subunit | Electron microscopy | 1.98 | 2748 | 2023-07-26 |
| 10 | 8CGJ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Streptomycin bound to the 30S body | Electron microscopy | 1.79 | 31 | 2023-07-26 |
| 11 | 8CGU|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Gentamicin bound to the 30S body | Electron microscopy | 1.89 | 31 | 2023-07-26 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8CEU|1|a | Retapamulin and Capreomycin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.83 | 2753 | |
| 2 | 8CGD|1|a | Clindamycin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.98 | 2748 | |
| 3 | 8CAM|1|a | Evernimicin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.86 | 2690 | |
| 4 | 8CGK|1|a | Lincomycin and Avilamycin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.64 | 2699 | |
| 5 | 8AYE|1|a | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | ELECTRON MICROSCOPY | 1.96 | 2753 | |
| 6 | 7K00|1|a | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 2753 | |
| 7 | 8B0X|1|a | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | ELECTRON MICROSCOPY | 1.55 | 2748 | |
| 8 | 8E30|1|I | E. coli 50S ribosome bound to compound streptogramin A analog 3142 | ELECTRON MICROSCOPY | 1.91 | 2898 | |
| 9 | 8E3O|1|I | E. coli 50S ribosome bound to solithromycin and VM1 | ELECTRON MICROSCOPY | 1.99 | 2897 | |
| 10 | 8CGU|1|a | Gentamicin bound to the 30S body | ELECTRON MICROSCOPY | 1.89 | 31 | |
| 11 | 8CGJ|1|a | Streptomycin bound to the 30S body | ELECTRON MICROSCOPY | 1.79 | 31 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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