RNA 3D Hub //

Equivalence class NR_2.0_83717.153 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18B0X|1|a (rep)Large subunit ribosomal RNA23S rRNAEscherichia coli BBacteriaRF02541Translating 70S ribosome in the unrotated state (P and E, tRNAs)Electron microscopy1.5527482022-11-30
28CGK|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli BW25113BacteriaRF02541Lincomycin and Avilamycin bound to the 50S subunitElectron microscopy1.6426992023-07-19
38CGV|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli BW25113BacteriaRF02541Tiamulin bound to the 50S subunitElectron microscopy1.6626872023-08-02
48CEU|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli BW25113BacteriaRF02541Retapamulin and Capreomycin bound to the 50S subunitElectron microscopy1.8327532023-07-26
58FTO|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541E. coli 70S ribosome with an improved MS2 tag inserted in H98Electron microscopy1.8527672023-08-02
69GHE|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli K-12BacteriaRF02541Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)Electron microscopy1.8727822025-03-26
78E30|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to compound streptogramin A analog 3142Electron microscopy1.9128982023-06-28
88CAM|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli BW25113BacteriaRF02541Evernimicin bound to the 50S subunitElectron microscopy1.8626902023-07-26
98AYE|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541E. coli 70S ribosome bound to thermorubin and fMet-tRNAElectron microscopy1.9627532023-03-01
108E3O|1|ILarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 50S ribosome bound to solithromycin and VM1Electron microscopy1.9928972023-06-28
119D89|1|DLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)Electron microscopy1.9527282025-01-22
127K00|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.9827532020-09-23
138CGD|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli BW25113BacteriaRF02541Clindamycin bound to the 50S subunitElectron microscopy1.9827482023-07-26
148QOA|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli BW25113BacteriaRF02541Structure of SecM-stalled Escherichia coli 70S ribosomeElectron microscopy227532024-03-20
158CGJ|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli BW25113BacteriaRF02541Streptomycin bound to the 30S bodyElectron microscopy1.79312023-07-26
168CGU|1|aLarge subunit ribosomal RNA23S rRNAEscherichia coli BW25113BacteriaRF02541Gentamicin bound to the 30S bodyElectron microscopy1.89312023-07-26

Release history

Release3.3813.382
Date2025-04-022025-04-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18E3O|1|IE. coli 50S ribosome bound to solithromycin and VM1ELECTRON MICROSCOPY1.992897
28E30|1|IE. coli 50S ribosome bound to compound streptogramin A analog 3142ELECTRON MICROSCOPY1.912898
39D89|1|DE. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)ELECTRON MICROSCOPY1.952728
48B0X|1|aTranslating 70S ribosome in the unrotated state (P and E, tRNAs)ELECTRON MICROSCOPY1.552748
59GHE|1|aStaphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)ELECTRON MICROSCOPY1.872782
68CGK|1|aLincomycin and Avilamycin bound to the 50S subunitELECTRON MICROSCOPY1.642699
78CAM|1|aEvernimicin bound to the 50S subunitELECTRON MICROSCOPY1.862690
88CGD|1|aClindamycin bound to the 50S subunitELECTRON MICROSCOPY1.982748
98CEU|1|aRetapamulin and Capreomycin bound to the 50S subunitELECTRON MICROSCOPY1.832753
108CGV|1|aTiamulin bound to the 50S subunitELECTRON MICROSCOPY1.662687
118AYE|1|aE. coli 70S ribosome bound to thermorubin and fMet-tRNAELECTRON MICROSCOPY1.962753
127K00|1|aStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.982753
138QOA|1|aStructure of SecM-stalled Escherichia coli 70S ribosomeELECTRON MICROSCOPY22753
148FTO|1|aE. coli 70S ribosome with an improved MS2 tag inserted in H98ELECTRON MICROSCOPY1.852767
158CGU|1|aGentamicin bound to the 30S bodyELECTRON MICROSCOPY1.8931
168CGJ|1|aStreptomycin bound to the 30S bodyELECTRON MICROSCOPY1.7931

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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