RNA 3D Hub //

Equivalence class NR_2.5_05003.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14J7L|1|B (rep)RNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-ray diffraction1.852013-03-27
25W0M|1|JU5 single-stranded RNAsynthetic constructStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.342017-06-28
35BUD|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.9952015-07-08
45W0M|1|IU5 single-stranded RNAsynthetic constructStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.342017-06-28
55W0M|1|HU5 single-stranded RNAsynthetic constructStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.342017-06-28
64J7M|1|BRNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3')synthetic constructCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-ray diffraction1.752013-03-27
75BUD|1|DRNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.9942015-07-08
86A4E|1|BRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.4522019-03-13
96A4E|1|DRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.4522019-03-13
108OPL|1|AjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
118OPL|1|AkRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
128OPL|1|AlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
138OPL|1|AmRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
148OPL|1|AnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
158OPL|1|AoRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
168OPL|1|ApRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
178OPL|1|AqRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
188OPL|1|ArRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
198OPL|1|BbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
208OPL|1|BcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
218OPL|1|BdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
228OPL|1|BeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
238OPL|1|BfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
248OPL|1|BgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
258OPL|1|BhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
268OPL|1|BiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
278OPL|1|BjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
288OPL|1|BtRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
298OPL|1|BuRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
308OPL|1|BvRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
318OPL|1|BwRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
328OPL|1|BxRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
338OPL|1|ByRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
348OPL|1|BzRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
358OPL|1|CaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
368OPL|1|CbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24

Release history

Release3.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.332
Date2024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
15BUD|1|ECrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.995
25BUD|1|DCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.994
38OPL|1|BhVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
48OPL|1|AkVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
58OPL|1|BbVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
68OPL|1|BvVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
78OPL|1|AnVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
88OPL|1|BuVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
98OPL|1|CbVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
108OPL|1|BfVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
118OPL|1|BzVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
128OPL|1|BeVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
138OPL|1|ApVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
148OPL|1|ByVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
158OPL|1|BwVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
168OPL|1|AqVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
178OPL|1|AoVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
188OPL|1|BdVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
198OPL|1|BxVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
208OPL|1|BgVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
218OPL|1|CaVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
228OPL|1|AlVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
238OPL|1|BjVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
248OPL|1|BiVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
258OPL|1|AjVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
268OPL|1|BcVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
278OPL|1|BtVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
288OPL|1|ArVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
298OPL|1|AmVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
304J7M|1|BCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-RAY DIFFRACTION1.75
314J7L|1|BCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-RAY DIFFRACTION1.85
325W0M|1|JStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
335W0M|1|IStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
345W0M|1|HStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
356A4E|1|BTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452
366A4E|1|DTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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