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Equivalence class NR_2.5_05529.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
11XPE|1|A+ 1XPE|1|B (rep)5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'HIV-1 subtype B genomic RNA Dimerization Initiation SiteX-ray diffraction1.94462005-10-18
21XPF|1|A+ 1XPF|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype A genomic RNA Dimerization Initiation SiteX-ray diffraction2.3462005-10-18
31XP7|1|A+ 1XP7|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype F genomic RNA Dimerization Initiation SiteX-ray diffraction2.5462005-10-18
42FCY|1|A+ 2FCY|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with NeomycinX-ray diffraction2.2462006-05-16
51ZCI|1|A+ 1ZCI|1|B5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- monoclinic formX-ray diffraction1.65462006-01-31
62FCX|1|A+ 2FCX|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with neamineX-ray diffraction2462006-05-16
71Y3S|1|A+ 1Y3S|1|B5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- MPD formX-ray diffraction2.25462005-11-08
82FCZ|1|A+ 2FCZ|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with ribostamycinX-ray diffraction2.01462006-05-16
91YXP|1|A+ 1YXP|1|B5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- Zn soakedX-ray diffraction2.4462006-01-31
102FD0|1|A+ 2FD0|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with lividomycinX-ray diffraction1.8462006-05-16
111ZCI|1|C+ 1ZCI|1|D5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- monoclinic formX-ray diffraction1.65462006-01-31
122FCZ|1|C+ 2FCZ|1|DHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with ribostamycinX-ray diffraction2.01462006-05-16
131Y99|1|A+ 1Y99|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype A DIS RNA duplexX-ray diffraction2.4462004-12-21
141NLC|1|B+ 1NLC|1|AHIV-1 DIS(MAL) genomic RNAHIV-1 DIS(Mal) duplex Zn-soakedX-ray diffraction1.85232003-05-13
15462D|1|B+ 462D|1|ARNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G) -3')CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITEX-ray diffraction2.3231999-12-02
162OIY|1|A+ 2OIY|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'Crystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation siteX-ray diffraction1.6462007-12-25
172OIJ|1|A+ 2OIJ|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'HIV-1 subtype B DIS RNA extended duplex AuCl3 soakedX-ray diffraction2.31462007-02-13
183C44|1|A+ 3C44|1|BHIV-1 subtype F genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycinX-ray diffraction2462008-05-06
192QEK|1|A+ 2QEK|1|BHIV-1 subtype F DIS genomic RNAHIV-1 subtype F DIS RNA extended duplex formX-ray diffraction1.8462008-05-06
203FAR|1|A+ 3FAR|1|BRNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3')Cation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation SiteX-ray diffraction2.4462009-11-24
213DVV|1|A+ 3DVV|1|BHIV-1 genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)X-ray diffraction2462008-08-12

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_05529.1NR_2.5_60167.12.93(9) 1NLC|1|B+1NLC|1|A, 1Y99|1|A+1Y99|1|B, 2OIJ|1|A+2OIJ|1|B, 2OIY|1|A+2OIY|1|B, 2QEK|1|A+2QEK|1|B, 3C44|1|A+3C44|1|B, 3DVV|1|A+3DVV|1|B, 3FAR|1|A+3FAR|1|B, 462D|1|B+462D|1|A(12) 1XP7|1|A+1XP7|1|B, 1XPE|1|A+1XPE|1|B, 1XPF|1|A+1XPF|1|B, 1Y3S|1|A+1Y3S|1|B, 1YXP|1|A+1YXP|1|B, 1ZCI|1|A+1ZCI|1|B, 1ZCI|1|C+1ZCI|1|D, 2FCX|1|A+2FCX|1|B, 2FCY|1|A+2FCY|1|B, 2FCZ|1|A+2FCZ|1|B, 2FCZ|1|C+2FCZ|1|D, 2FD0|1|A+2FD0|1|B(0)
NR_2.5_05529.1NR_2.5_78706.12.93(12) 1XP7|1|A+1XP7|1|B, 1XPE|1|A+1XPE|1|B, 1XPF|1|A+1XPF|1|B, 1Y3S|1|A+1Y3S|1|B, 1YXP|1|A+1YXP|1|B, 1ZCI|1|A+1ZCI|1|B, 1ZCI|1|C+1ZCI|1|D, 2FCX|1|A+2FCX|1|B, 2FCY|1|A+2FCY|1|B, 2FCZ|1|A+2FCZ|1|B, 2FCZ|1|C+2FCZ|1|D, 2FD0|1|A+2FD0|1|B(9) 1NLC|1|B+1NLC|1|A, 1Y99|1|A+1Y99|1|B, 2OIJ|1|A+2OIJ|1|B, 2OIY|1|A+2OIY|1|B, 2QEK|1|A+2QEK|1|B, 3C44|1|A+3C44|1|B, 3DVV|1|A+3DVV|1|B, 3FAR|1|A+3FAR|1|B, 462D|1|B+462D|1|A(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
12FCZ|1|A+ 2FCZ|1|BHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.0146
22FD0|1|A+ 2FD0|1|BHIV-1 DIS kissing-loop in complex with lividomycinX-RAY DIFFRACTION1.846
32FCY|1|A+ 2FCY|1|BHIV-1 DIS kissing-loop in complex with NeomycinX-RAY DIFFRACTION2.246
42FCZ|1|C+ 2FCZ|1|DHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.0146
52FCX|1|A+ 2FCX|1|BHIV-1 DIS kissing-loop in complex with neamineX-RAY DIFFRACTION246
61XPE|1|A+ 1XPE|1|BHIV-1 subtype B genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION1.9446
71XPF|1|A+ 1XPF|1|BHIV-1 subtype A genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.346
81YXP|1|A+ 1YXP|1|BHIV-1 DIS RNA subtype F- Zn soakedX-RAY DIFFRACTION2.446
91Y3S|1|A+ 1Y3S|1|BHIV-1 DIS RNA subtype F- MPD formX-RAY DIFFRACTION2.2546
101XP7|1|A+ 1XP7|1|BHIV-1 subtype F genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.546
111ZCI|1|C+ 1ZCI|1|DHIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.6546
121ZCI|1|A+ 1ZCI|1|BHIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.6546
133DVV|1|A+ 3DVV|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)X-RAY DIFFRACTION246
143C44|1|A+ 3C44|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycinX-RAY DIFFRACTION246
153FAR|1|A+ 3FAR|1|BCation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.446
162OIY|1|A+ 2OIY|1|BCrystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation siteX-RAY DIFFRACTION1.646
172OIJ|1|A+ 2OIJ|1|BHIV-1 subtype B DIS RNA extended duplex AuCl3 soakedX-RAY DIFFRACTION2.3146
181Y99|1|A+ 1Y99|1|BHIV-1 subtype A DIS RNA duplexX-RAY DIFFRACTION2.446
19462D|1|B+ 462D|1|ACRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITEX-RAY DIFFRACTION2.323
201NLC|1|B+ 1NLC|1|AHIV-1 DIS(Mal) duplex Zn-soakedX-RAY DIFFRACTION1.8523
212QEK|1|A+ 2QEK|1|BHIV-1 subtype F DIS RNA extended duplex formX-RAY DIFFRACTION1.846

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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