Equivalence class NR_2.5_10157.146 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4YBB|1|DB (rep) | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 120 | 2015-03-18 |
| 2 | 4YBB|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 118 | 2015-03-18 |
| 3 | 8B0X|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli B | Bacteria | RF00001 | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | Electron microscopy | 1.55 | 119 | 2022-11-30 |
| 4 | 8CEU|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Retapamulin and Capreomycin bound to the 50S subunit | Electron microscopy | 1.83 | 119 | 2023-07-26 |
| 5 | 8FTO|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | Electron microscopy | 1.85 | 119 | 2023-08-02 |
| 6 | 9D89|1|E | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement) | Electron microscopy | 1.95 | 119 | 2025-01-22 |
| 7 | 8AYE|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 119 | 2023-03-01 |
| 8 | 7K00|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 119 | 2020-09-23 |
| 9 | 8CGD|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Clindamycin bound to the 50S subunit | Electron microscopy | 1.98 | 119 | 2023-07-26 |
| 10 | 8QOA|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 119 | 2024-03-20 |
| 11 | 8BIL|1|1 | 5S ribosomal RNA | 5S rRNA | Escherichia coli K-12 | Bacteria | RF00001 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. | Electron microscopy | 2.04 | 120 | 2023-08-16 |
| 12 | 8G6W|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe | Electron microscopy | 2.02 | 119 | 2023-04-05 |
| 13 | 8BIM|1|1 | 5S ribosomal RNA | 5S rRNA | Escherichia coli K-12 | Bacteria | RF00001 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site | Electron microscopy | 2.04 | 120 | 2023-08-16 |
| 14 | 8E30|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound streptogramin A analog 3142 | Electron microscopy | 1.91 | 118 | 2023-06-28 |
| 15 | 8G6Y|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe | Electron microscopy | 2.09 | 119 | 2023-04-05 |
| 16 | 8E3O|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to solithromycin and VM1 | Electron microscopy | 1.99 | 118 | 2023-06-28 |
| 17 | 8EMM|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates | Electron microscopy | 2.1 | 119 | 2023-05-31 |
| 18 | 8ANA|1|b | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF00001 | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit | Electron microscopy | 2.1 | 119 | 2023-03-08 |
| 19 | 8BGE|1|1 | 5S ribosomal RNA | 5S rRNA | Escherichia coli K-12 | Bacteria | RF00001 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.11 | 120 | 2023-08-16 |
| 20 | 8E49|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to antibiotic analog SLC31 | Electron microscopy | 2.05 | 118 | 2023-06-28 |
| 21 | 6XZ7|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | Electron microscopy | 2.1 | 120 | 2020-07-22 |
| 22 | 7QQ3|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF00001 | Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A. | Electron microscopy | 2.1 | 118 | 2023-01-18 |
| 23 | 8E43|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound streptogramin A analog 3336 | Electron microscopy | 2.09 | 118 | 2023-06-28 |
| 24 | 8BHL|1|1 | 5S ribosomal RNA | 5S rRNA | Escherichia coli K-12 | Bacteria | RF00001 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.21 | 120 | 2023-08-16 |
| 25 | 8R6C|1|b | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF00001 | 70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA. | Electron microscopy | 2.2 | 119 | 2024-07-24 |
| 26 | 8E41|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to tiamulin and VS1 | Electron microscopy | 2.13 | 118 | 2023-06-28 |
| 27 | 8QBT|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | E. coli ApdP-stalled ribosomal complex | Electron microscopy | 2.2 | 118 | 2024-03-20 |
| 28 | 7ZP8|1|a | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | 70S E. coli ribosome with a stalled filamin domain 5 nascent chain | Electron microscopy | 2.2 | 118 | 2022-08-10 |
| 29 | 8EIU|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome with A-loop mutations U2554C and U2555C | Electron microscopy | 2.24 | 119 | 2023-02-01 |
| 30 | 8YUO|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site | Electron microscopy | 2.25 | 119 | 2024-11-06 |
| 31 | 8E33|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound streptogramin analog SAB001 | Electron microscopy | 2.23 | 118 | 2023-06-28 |
| 32 | 7LVK|1|J | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Cfr-modified 50S subunit from Escherichia coli | Electron microscopy | 2.2 | 118 | 2021-12-15 |
| 33 | 6PJ6|1|J | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High resolution cryo-EM structure of E.coli 50S | Electron microscopy | 2.2 | 118 | 2020-01-22 |
| 34 | 8BF7|1|1 | 5S ribosomal RNA | 5S rRNA | Escherichia coli K-12 | Bacteria | RF00001 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.33 | 120 | 2023-08-16 |
| 35 | 7N1P|1|5 | 5S ribosomal RNA | 5S rRNA | Escherichia coli K-12 | Bacteria | RF00001 | Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation | Electron microscopy | 2.33 | 120 | 2021-07-14 |
| 36 | 8AKN|1|b | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF00001 | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome | Electron microscopy | 2.3 | 119 | 2023-03-08 |
| 37 | 8G6X|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe | Electron microscopy | 2.31 | 119 | 2023-03-22 |
| 38 | 7PJS|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C) | Electron microscopy | 2.35 | 120 | 2021-10-20 |
| 39 | 8HSP|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state | Electron microscopy | 2.32 | 119 | 2024-04-03 |
| 40 | 7Z20|1|a | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain | Electron microscopy | 2.29 | 118 | 2022-08-10 |
| 41 | 7Y7G|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) | Electron microscopy | 2.34 | 119 | 2023-10-25 |
| 42 | 8BHP|1|1 | 5S ribosomal RNA | 5S rRNA | Escherichia coli K-12 | Bacteria | RF00001 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.37 | 120 | 2023-08-16 |
| 43 | 7O1A|1|BB | 5S ribosomal RNA | Ribosomal RNA 5S | Escherichia coli K-12 | Bacteria | RF00001 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.4 | 120 | 2021-09-01 |
| 44 | 8E3M|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to L-linker solithromycin conjugate | Electron microscopy | 2.25 | 118 | 2023-06-28 |
| 45 | 8E45|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to antibiotic analog SLC17 | Electron microscopy | 2.3 | 118 | 2023-06-28 |
| 46 | 7S1H|1|J | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Wild-type Escherichia coli ribosome with antibiotic linezolid | Electron microscopy | 2.35 | 118 | 2021-11-17 |
| 47 | 8E32|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1 | Electron microscopy | 2.35 | 118 | 2023-06-28 |
| 48 | 8YUP|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA | Electron microscopy | 2.39 | 119 | 2024-11-06 |
| 49 | 8R8M|1|b | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF00001 | 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA. | Electron microscopy | 2.4 | 119 | 2024-07-24 |
| 50 | 9FBV|1|b | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF00001 | 70S Escherichia coli ribosome with P-site initiatior tRNA. | Electron microscopy | 2.4 | 119 | 2024-06-26 |
| 51 | 8HTZ|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state | Electron microscopy | 2.4 | 119 | 2024-04-03 |
| 52 | 8E46|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to antibiotic analog SLC21 | Electron microscopy | 2.32 | 118 | 2023-06-28 |
| 53 | 8RQ2|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III | Electron microscopy | 2.44 | 120 | 2024-05-22 |
| 54 | 8RQ0|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II | Electron microscopy | 2.44 | 120 | 2024-05-22 |
| 55 | 8RPZ|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I | Electron microscopy | 2.44 | 120 | 2024-05-22 |
| 56 | 8E3L|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to D-linker solithromycin conjugate | Electron microscopy | 2.35 | 118 | 2023-06-28 |
| 57 | 7Y7E|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | Electron microscopy | 2.41 | 119 | 2023-10-25 |
| 58 | 8YUQ|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA | Electron microscopy | 2.41 | 119 | 2024-11-06 |
| 59 | 8E48|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to antibiotic analog SLC30 | Electron microscopy | 2.27 | 118 | 2023-06-28 |
| 60 | 7Y7F|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC) | Electron microscopy | 2.43 | 119 | 2023-10-25 |
| 61 | 8IFB|1|b | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Dibekacin-bound E.coli 70S ribosome in the PURE system | Electron microscopy | 2.43 | 119 | 2024-02-14 |
| 62 | 8YUS|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA | Electron microscopy | 2.43 | 119 | 2024-11-06 |
| 63 | 8E42|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to tiamulin and azithromycin | Electron microscopy | 2.29 | 118 | 2023-06-28 |
| 64 | 8E35|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound SAB002 | Electron microscopy | 2.27 | 118 | 2023-06-28 |
| 65 | 7S1K|1|J | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid | Electron microscopy | 2.42 | 118 | 2022-01-19 |
| 66 | 8YUR|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA | Electron microscopy | 2.47 | 119 | 2024-11-06 |
| 67 | 7BL4|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF00001 | in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle | Electron microscopy | 2.4 | 119 | 2021-05-12 |
| 68 | 8E47|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to antibiotic analog SLC26 | Electron microscopy | 2.32 | 118 | 2023-06-28 |
| 69 | 7S1J|1|J | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Wild-type Escherichia coli ribosome with antibiotic radezolid | Electron microscopy | 2.47 | 118 | 2022-03-02 |
| 70 | 8W51|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of YchF(H114A) on E.coli 50S ribosomal subunit | Electron microscopy | 2.4 | 118 | 2024-08-28 |
| 71 | 7S1G|1|J | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | wild-type Escherichia coli stalled ribosome with antibiotic linezolid | Electron microscopy | 2.48 | 118 | 2021-11-17 |
| 72 | 7S1I|1|J | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Wild-type Escherichia coli stalled ribosome with antibiotic radezolid | Electron microscopy | 2.48 | 118 | 2022-03-02 |
| 73 | 8E36|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound streptogramin A analog 3146 | Electron microscopy | 2.38 | 118 | 2023-06-28 |
| 74 | 6PC6|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound 47 | Electron microscopy | 2.5 | 118 | 2020-06-17 |
| 75 | 6PCR|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound 40o | Electron microscopy | 2.5 | 118 | 2020-06-17 |
| 76 | 6PC7|1|J | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | E. coli 50S ribosome bound to compound 46 | Electron microscopy | 2.5 | 118 | 2020-06-17 |
| 77 | 8CGV|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Tiamulin bound to the 50S subunit | Electron microscopy | 1.66 | 56 | 2023-08-02 |
| 78 | 8CGK|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Lincomycin and Avilamycin bound to the 50S subunit | Electron microscopy | 1.64 | 39 | 2023-07-19 |
| 79 | 8CAM|1|b | 5S ribosomal RNA | 5S rRNA | Escherichia coli BW25113 | Bacteria | RF00001 | Evernimicin bound to the 50S subunit | Electron microscopy | 1.86 | 34 | 2023-07-26 |
Release history
| Release | 3.373 |
|---|---|
| Date | 2025-02-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7ZP8|1|a | 70S E. coli ribosome with a stalled filamin domain 5 nascent chain | ELECTRON MICROSCOPY | 2.2 | 118 | |
| 2 | 7Z20|1|a | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain | ELECTRON MICROSCOPY | 2.29 | 118 | |
| 3 | 9D89|1|E | E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement) | ELECTRON MICROSCOPY | 1.95 | 119 | |
| 4 | 7PJS|1|B | Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C) | ELECTRON MICROSCOPY | 2.35 | 120 | |
| 5 | 7LVK|1|J | Cfr-modified 50S subunit from Escherichia coli | ELECTRON MICROSCOPY | 2.2 | 118 | |
| 6 | 6PJ6|1|J | High resolution cryo-EM structure of E.coli 50S | ELECTRON MICROSCOPY | 2.2 | 118 | |
| 7 | 8W51|1|B | Structure of YchF(H114A) on E.coli 50S ribosomal subunit | ELECTRON MICROSCOPY | 2.4 | 118 | |
| 8 | 4YBB|1|CB | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 118 | |
| 9 | 4YBB|1|DB | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 120 | |
| 10 | 6XZ7|1|B | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | ELECTRON MICROSCOPY | 2.1 | 120 | |
| 11 | 7N1P|1|5 | Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation | ELECTRON MICROSCOPY | 2.33 | 120 | |
| 12 | 8CGK|1|b | Lincomycin and Avilamycin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.64 | 39 | |
| 13 | 8CAM|1|b | Evernimicin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.86 | 34 | |
| 14 | 8CGD|1|b | Clindamycin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.98 | 119 | |
| 15 | 8R8M|1|b | 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA. | ELECTRON MICROSCOPY | 2.4 | 119 | |
| 16 | 8CEU|1|b | Retapamulin and Capreomycin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.83 | 119 | |
| 17 | 8ANA|1|b | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit | ELECTRON MICROSCOPY | 2.1 | 119 | |
| 18 | 8CGV|1|b | Tiamulin bound to the 50S subunit | ELECTRON MICROSCOPY | 1.66 | 56 | |
| 19 | 8AKN|1|b | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome | ELECTRON MICROSCOPY | 2.3 | 119 | |
| 20 | 8R6C|1|b | 70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA. | ELECTRON MICROSCOPY | 2.2 | 119 | |
| 21 | 9FBV|1|b | 70S Escherichia coli ribosome with P-site initiatior tRNA. | ELECTRON MICROSCOPY | 2.4 | 119 | |
| 22 | 8AYE|1|b | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | ELECTRON MICROSCOPY | 1.96 | 119 | |
| 23 | 7K00|1|b | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 119 | |
| 24 | 8G6Y|1|b | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe | ELECTRON MICROSCOPY | 2.09 | 119 | |
| 25 | 8G6W|1|b | Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe | ELECTRON MICROSCOPY | 2.02 | 119 | |
| 26 | 8IFB|1|b | Dibekacin-bound E.coli 70S ribosome in the PURE system | ELECTRON MICROSCOPY | 2.43 | 119 | |
| 27 | 8FTO|1|b | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | ELECTRON MICROSCOPY | 1.85 | 119 | |
| 28 | 8G6X|1|b | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe | ELECTRON MICROSCOPY | 2.31 | 119 | |
| 29 | 8EMM|1|b | Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates | ELECTRON MICROSCOPY | 2.1 | 119 | |
| 30 | 8EIU|1|b | E. coli 70S ribosome with A-loop mutations U2554C and U2555C | ELECTRON MICROSCOPY | 2.24 | 119 | |
| 31 | 8YUO|1|b | E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site | ELECTRON MICROSCOPY | 2.25 | 119 | |
| 32 | 8HSP|1|b | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state | ELECTRON MICROSCOPY | 2.32 | 119 | |
| 33 | 8YUR|1|b | E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA | ELECTRON MICROSCOPY | 2.47 | 119 | |
| 34 | 8YUS|1|b | E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA | ELECTRON MICROSCOPY | 2.43 | 119 | |
| 35 | 8HTZ|1|b | E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state | ELECTRON MICROSCOPY | 2.4 | 119 | |
| 36 | 8YUP|1|b | E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA | ELECTRON MICROSCOPY | 2.39 | 119 | |
| 37 | 8YUQ|1|b | E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA | ELECTRON MICROSCOPY | 2.41 | 119 | |
| 38 | 7Y7E|1|b | Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.41 | 119 | |
| 39 | 7Y7G|1|b | Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) | ELECTRON MICROSCOPY | 2.34 | 119 | |
| 40 | 7Y7F|1|b | Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC) | ELECTRON MICROSCOPY | 2.43 | 119 | |
| 41 | 8B0X|1|b | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | ELECTRON MICROSCOPY | 1.55 | 119 | |
| 42 | 8QOA|1|b | Structure of SecM-stalled Escherichia coli 70S ribosome | ELECTRON MICROSCOPY | 2 | 119 | |
| 43 | 8QBT|1|B | E. coli ApdP-stalled ribosomal complex | ELECTRON MICROSCOPY | 2.2 | 118 | |
| 44 | 7S1I|1|J | Wild-type Escherichia coli stalled ribosome with antibiotic radezolid | ELECTRON MICROSCOPY | 2.48 | 118 | |
| 45 | 7S1G|1|J | wild-type Escherichia coli stalled ribosome with antibiotic linezolid | ELECTRON MICROSCOPY | 2.48 | 118 | |
| 46 | 7S1H|1|J | Wild-type Escherichia coli ribosome with antibiotic linezolid | ELECTRON MICROSCOPY | 2.35 | 118 | |
| 47 | 7S1K|1|J | Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid | ELECTRON MICROSCOPY | 2.42 | 118 | |
| 48 | 7S1J|1|J | Wild-type Escherichia coli ribosome with antibiotic radezolid | ELECTRON MICROSCOPY | 2.47 | 118 | |
| 49 | 8E36|1|J | E. coli 50S ribosome bound to compound streptogramin A analog 3146 | ELECTRON MICROSCOPY | 2.38 | 118 | |
| 50 | 8E41|1|J | E. coli 50S ribosome bound to tiamulin and VS1 | ELECTRON MICROSCOPY | 2.13 | 118 | |
| 51 | 8E33|1|J | E. coli 50S ribosome bound to compound streptogramin analog SAB001 | ELECTRON MICROSCOPY | 2.23 | 118 | |
| 52 | 8E30|1|J | E. coli 50S ribosome bound to compound streptogramin A analog 3142 | ELECTRON MICROSCOPY | 1.91 | 118 | |
| 53 | 8E3O|1|J | E. coli 50S ribosome bound to solithromycin and VM1 | ELECTRON MICROSCOPY | 1.99 | 118 | |
| 54 | 6PC7|1|J | E. coli 50S ribosome bound to compound 46 | ELECTRON MICROSCOPY | 2.5 | 118 | |
| 55 | 6PC6|1|J | E. coli 50S ribosome bound to compound 47 | ELECTRON MICROSCOPY | 2.5 | 118 | |
| 56 | 6PCR|1|J | E. coli 50S ribosome bound to compound 40o | ELECTRON MICROSCOPY | 2.5 | 118 | |
| 57 | 8E43|1|J | E. coli 50S ribosome bound to compound streptogramin A analog 3336 | ELECTRON MICROSCOPY | 2.09 | 118 | |
| 58 | 8E42|1|J | E. coli 50S ribosome bound to tiamulin and azithromycin | ELECTRON MICROSCOPY | 2.29 | 118 | |
| 59 | 8E3M|1|J | E. coli 50S ribosome bound to L-linker solithromycin conjugate | ELECTRON MICROSCOPY | 2.25 | 118 | |
| 60 | 7BL4|1|B | in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle | ELECTRON MICROSCOPY | 2.4 | 119 | |
| 61 | 8RQ0|1|B | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II | ELECTRON MICROSCOPY | 2.44 | 120 | |
| 62 | 8RPZ|1|B | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I | ELECTRON MICROSCOPY | 2.44 | 120 | |
| 63 | 8RQ2|1|B | Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III | ELECTRON MICROSCOPY | 2.44 | 120 | |
| 64 | 7O1A|1|BB | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.4 | 120 | |
| 65 | 7QQ3|1|J | Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A. | ELECTRON MICROSCOPY | 2.1 | 118 | |
| 66 | 8E49|1|J | E. coli 50S ribosome bound to antibiotic analog SLC31 | ELECTRON MICROSCOPY | 2.05 | 118 | |
| 67 | 8E45|1|J | E. coli 50S ribosome bound to antibiotic analog SLC17 | ELECTRON MICROSCOPY | 2.3 | 118 | |
| 68 | 8E46|1|J | E. coli 50S ribosome bound to antibiotic analog SLC21 | ELECTRON MICROSCOPY | 2.32 | 118 | |
| 69 | 8E32|1|J | E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1 | ELECTRON MICROSCOPY | 2.35 | 118 | |
| 70 | 8E3L|1|J | E. coli 50S ribosome bound to D-linker solithromycin conjugate | ELECTRON MICROSCOPY | 2.35 | 118 | |
| 71 | 8BF7|1|1 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | ELECTRON MICROSCOPY | 2.33 | 120 | |
| 72 | 8BGE|1|1 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation | ELECTRON MICROSCOPY | 2.11 | 120 | |
| 73 | 8BHL|1|1 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation | ELECTRON MICROSCOPY | 2.21 | 120 | |
| 74 | 8BHP|1|1 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation | ELECTRON MICROSCOPY | 2.37 | 120 | |
| 75 | 8BIL|1|1 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. | ELECTRON MICROSCOPY | 2.04 | 120 | |
| 76 | 8BIM|1|1 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site | ELECTRON MICROSCOPY | 2.04 | 120 | |
| 77 | 8E48|1|J | E. coli 50S ribosome bound to antibiotic analog SLC30 | ELECTRON MICROSCOPY | 2.27 | 118 | |
| 78 | 8E47|1|J | E. coli 50S ribosome bound to antibiotic analog SLC26 | ELECTRON MICROSCOPY | 2.32 | 118 | |
| 79 | 8E35|1|J | E. coli 50S ribosome bound to compound SAB002 | ELECTRON MICROSCOPY | 2.27 | 118 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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