NR_2.5_10157.170

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8B0X\|1\|b (rep)	5S ribosomal RNA	5S rRNA	Escherichia coli B	Bacteria	RF00001	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	Electron microscopy	1.55	119	2022-11-30
2	9Q87\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli B	Bacteria	RF00001	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	Electron microscopy	1.55	120	2025-05-14
3	9GHE\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	Electron microscopy	1.87	119	2025-03-26
4	8BIL\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	Electron microscopy	2.04	120	2023-08-16
5	8BIM\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	Electron microscopy	2.04	120	2023-08-16
6	7K00\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	119	2020-09-23
7	8CGD\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Clindamycin bound to the 50S subunit	Electron microscopy	1.98	119	2023-07-26
8	9GHB\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	Electron microscopy	2.21	119	2025-03-26
9	8BGE\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.11	120	2023-08-16
10	8G6Y\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	Electron microscopy	2.09	119	2023-04-05
11	9GHA\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	Electron microscopy	2.24	119	2025-03-26
12	9JPP\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)	Electron microscopy	2.26	119	2026-03-11
13	9GHD\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	Electron microscopy	2.41	119	2025-03-26
14	8BHL\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.21	120	2023-08-16
15	8FTO\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome with an improved MS2 tag inserted in H98	Electron microscopy	1.85	119	2023-08-02
16	9GHF\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	Electron microscopy	2.4	119	2025-03-26
17	9B4Z\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	Electron microscopy	2.2	118	2025-08-27
18	8BHP\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.37	120	2023-08-16
19	9D89\|1\|E	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)	Electron microscopy	1.95	119	2025-01-22
20	8E30\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin A analog 3142	Electron microscopy	1.91	118	2023-06-28
21	8BF7\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.33	120	2023-08-16
22	9B51\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	Electron microscopy	2.4	118	2025-08-27
23	9N2B\|1\|5	5S ribosomal RNA	5S ribosomal RNA (rRNA) from the B operon	Escherichia coli K-12	Bacteria	RF00001	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	Electron microscopy	2.2	120	2025-03-19
24	7N1P\|1\|5	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	120	2021-07-14
25	9N2C\|1\|5	5S ribosomal RNA	5S large subunit ribosomal RNA of the H operon	Escherichia coli K-12	Bacteria	RF00001	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	Electron microscopy	2.4	120	2025-03-19
26	8W51\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of YchF(H114A) on E.coli 50S ribosomal subunit	Electron microscopy	2.4	118	2024-08-28
27	7Z20\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	Electron microscopy	2.29	118	2022-08-10
28	8HSP\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	Electron microscopy	2.32	119	2024-04-03
29	8E49\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC31	Electron microscopy	2.05	118	2023-06-28
30	8EMM\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	Electron microscopy	2.1	119	2023-05-31
31	9JPM\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)	Electron microscopy	2.43	119	2026-03-11
32	7LVK\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cfr-modified 50S subunit from Escherichia coli	Electron microscopy	2.2	118	2021-12-15
33	7S1I\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	118	2022-03-02
34	8G6W\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.02	119	2023-04-05
35	8YUP\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA	Electron microscopy	2.39	119	2024-11-06
36	7S1H\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	118	2021-11-17
37	8HTZ\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	Electron microscopy	2.4	119	2024-04-03
38	8YUQ\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA	Electron microscopy	2.41	119	2024-11-06
39	7S1G\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	118	2021-11-17
40	8G6X\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.31	119	2023-03-22
41	8IFB\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Dibekacin-bound E.coli 70S ribosome in the PURE system	Electron microscopy	2.43	119	2024-02-14
42	8YUS\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA	Electron microscopy	2.43	119	2024-11-06
43	9H0L\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	Electron microscopy	2.49	119	2025-05-28
44	8E46\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC21	Electron microscopy	2.32	118	2023-06-28
45	8E42\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to tiamulin and azithromycin	Electron microscopy	2.29	118	2023-06-28
46	8E3O\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to solithromycin and VM1	Electron microscopy	1.99	118	2023-06-28
47	8RPZ\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I	Electron microscopy	2.44	120	2024-05-22
48	8RQ2\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III	Electron microscopy	2.44	120	2024-05-22
49	8RQ0\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II	Electron microscopy	2.44	120	2024-05-22
50	8E41\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to tiamulin and VS1	Electron microscopy	2.13	118	2023-06-28
51	8CGV\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Tiamulin bound to the 50S subunit	Electron microscopy	1.66	56	2023-08-02
52	7ZP8\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	Electron microscopy	2.2	118	2022-08-10
53	9HYM\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA	Electron microscopy	2.2	118	2026-01-21
54	4YBB\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	120	2015-03-18
55	8E45\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC17	Electron microscopy	2.3	118	2023-06-28
56	8CEU\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Retapamulin and Capreomycin bound to the 50S subunit	Electron microscopy	1.83	119	2023-07-26
57	8YUR\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA	Electron microscopy	2.47	119	2024-11-06
58	6PCR\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 40o	Electron microscopy	2.5	118	2020-06-17
59	8CGK\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Lincomycin and Avilamycin bound to the 50S subunit	Electron microscopy	1.64	39	2023-07-19
60	8YUO\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site	Electron microscopy	2.25	119	2024-11-06
61	8E43\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin A analog 3336	Electron microscopy	2.09	118	2023-06-28
62	8CAM\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Evernimicin bound to the 50S subunit	Electron microscopy	1.86	34	2023-07-26
63	8E3M\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to L-linker solithromycin conjugate	Electron microscopy	2.25	118	2023-06-28
64	8EIU\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	Electron microscopy	2.24	119	2023-02-01
65	8E33\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin analog SAB001	Electron microscopy	2.23	118	2023-06-28
66	7Y7G\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	Electron microscopy	2.34	119	2023-10-25
67	7S1K\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	118	2022-01-19
68	7Y7F\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	Electron microscopy	2.43	119	2023-10-25
69	6PJ6\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High resolution cryo-EM structure of E.coli 50S	Electron microscopy	2.2	118	2020-01-22
70	9HUS\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs	Electron microscopy	2.4	118	2026-01-14
71	7Y7E\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.41	119	2023-10-25
72	6PC7\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 46	Electron microscopy	2.5	118	2020-06-17
73	8E48\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC30	Electron microscopy	2.27	118	2023-06-28
74	6PC6\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 47	Electron microscopy	2.5	118	2020-06-17
75	7BL4\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli K-12	Bacteria	RF00001	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	Electron microscopy	2.4	119	2021-05-12
76	9HUQ\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA	Electron microscopy	2.49	118	2026-01-14
77	8E36\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin A analog 3146	Electron microscopy	2.38	118	2023-06-28
78	8E32\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1	Electron microscopy	2.35	118	2023-06-28
79	8E47\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC26	Electron microscopy	2.32	118	2023-06-28
80	8E3L\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to D-linker solithromycin conjugate	Electron microscopy	2.35	118	2023-06-28
81	4YBB\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	118	2015-03-18
82	8E35\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound SAB002	Electron microscopy	2.27	118	2023-06-28
83	9QQQ\|1\|b	5S ribosomal RNA	E. coli 5S rRNA	Escherichia coli B	Bacteria	RF00001	Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)	Electron microscopy	2.26	119	2026-02-18
84	8AYE\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	Electron microscopy	1.96	119	2023-03-01
85	8QOA\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Structure of SecM-stalled Escherichia coli 70S ribosome	Electron microscopy	2	119	2024-03-20
86	8ANA\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	Electron microscopy	2.1	119	2023-03-08
87	7QQ3\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli K-12	Bacteria	RF00001	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	Electron microscopy	2.1	118	2023-01-18
88	6XZ7\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	Electron microscopy	2.1	120	2020-07-22
89	8R6C\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	Electron microscopy	2.2	119	2024-07-24
90	8QBT\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	E. coli ApdP-stalled ribosomal complex	Electron microscopy	2.2	118	2024-03-20
91	8AKN\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	Electron microscopy	2.3	119	2023-03-08
92	7PJS\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	120	2021-10-20
93	7O1A\|1\|BB	5S ribosomal RNA	Ribosomal RNA 5S	Escherichia coli K-12	Bacteria	RF00001	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	120	2021-09-01
94	8R8M\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.	Electron microscopy	2.4	119	2024-07-24
95	9FBV\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	70S Escherichia coli ribosome with P-site initiatior tRNA.	Electron microscopy	2.4	119	2024-06-26
96	7S1J\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	118	2022-03-02

Release history

Release	4.30
Date	2026-03-11

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	7ZP8\|1\|a	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.2	118
2	9HUQ\|1\|a	Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA	ELECTRON MICROSCOPY	2.49	118
3	9HYM\|1\|a	Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA	ELECTRON MICROSCOPY	2.2	118
4	9HUS\|1\|a	Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs	ELECTRON MICROSCOPY	2.4	118
5	7Z20\|1\|a	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.29	118
6	9D89\|1\|E	E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)	ELECTRON MICROSCOPY	1.95	119
7	4YBB\|1\|DB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	120
8	4YBB\|1\|CB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	118
9	8W51\|1\|B	Structure of YchF(H114A) on E.coli 50S ribosomal subunit	ELECTRON MICROSCOPY	2.4	118
10	6PJ6\|1\|J	High resolution cryo-EM structure of E.coli 50S	ELECTRON MICROSCOPY	2.2	118
11	7LVK\|1\|J	Cfr-modified 50S subunit from Escherichia coli	ELECTRON MICROSCOPY	2.2	118
12	7PJS\|1\|B	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	120
13	8QOA\|1\|b	Structure of SecM-stalled Escherichia coli 70S ribosome	ELECTRON MICROSCOPY	2	119
14	8YUQ\|1\|b	E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA	ELECTRON MICROSCOPY	2.41	119
15	8YUS\|1\|b	E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA	ELECTRON MICROSCOPY	2.43	119
16	8YUR\|1\|b	E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA	ELECTRON MICROSCOPY	2.47	119
17	8HSP\|1\|b	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	ELECTRON MICROSCOPY	2.32	119
18	8YUO\|1\|b	E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site	ELECTRON MICROSCOPY	2.25	119
19	8YUP\|1\|b	E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA	ELECTRON MICROSCOPY	2.39	119
20	8HTZ\|1\|b	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	ELECTRON MICROSCOPY	2.4	119
21	9JPM\|1\|b	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)	ELECTRON MICROSCOPY	2.43	119
22	8IFB\|1\|b	Dibekacin-bound E.coli 70S ribosome in the PURE system	ELECTRON MICROSCOPY	2.43	119
23	9H0L\|1\|b	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	ELECTRON MICROSCOPY	2.49	119
24	8B0X\|1\|b	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	ELECTRON MICROSCOPY	1.55	119
25	9Q87\|1\|b	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	ELECTRON MICROSCOPY	1.55	120
26	7Y7G\|1\|b	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	ELECTRON MICROSCOPY	2.34	119
27	7Y7E\|1\|b	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.41	119
28	7Y7F\|1\|b	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	ELECTRON MICROSCOPY	2.43	119
29	9JPP\|1\|b	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)	ELECTRON MICROSCOPY	2.26	119
30	8EIU\|1\|b	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	ELECTRON MICROSCOPY	2.24	119
31	8G6X\|1\|b	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.31	119
32	8EMM\|1\|b	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	ELECTRON MICROSCOPY	2.1	119
33	9FBV\|1\|b	70S Escherichia coli ribosome with P-site initiatior tRNA.	ELECTRON MICROSCOPY	2.4	119
34	8R6C\|1\|b	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	ELECTRON MICROSCOPY	2.2	119
35	8AKN\|1\|b	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	ELECTRON MICROSCOPY	2.3	119
36	8CGV\|1\|b	Tiamulin bound to the 50S subunit	ELECTRON MICROSCOPY	1.66	56
37	9QQQ\|1\|b	Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)	ELECTRON MICROSCOPY	2.26	119
38	8AYE\|1\|b	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	ELECTRON MICROSCOPY	1.96	119
39	7K00\|1\|b	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	119
40	8G6Y\|1\|b	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.09	119
41	8G6W\|1\|b	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.02	119
42	8FTO\|1\|b	E. coli 70S ribosome with an improved MS2 tag inserted in H98	ELECTRON MICROSCOPY	1.85	119
43	8ANA\|1\|b	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	ELECTRON MICROSCOPY	2.1	119
44	8CEU\|1\|b	Retapamulin and Capreomycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.83	119
45	8R8M\|1\|b	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.	ELECTRON MICROSCOPY	2.4	119
46	8CGD\|1\|b	Clindamycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.98	119
47	8CAM\|1\|b	Evernimicin bound to the 50S subunit	ELECTRON MICROSCOPY	1.86	34
48	9GHE\|1\|b	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	ELECTRON MICROSCOPY	1.87	119
49	9GHD\|1\|b	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	ELECTRON MICROSCOPY	2.41	119
50	9GHF\|1\|b	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	ELECTRON MICROSCOPY	2.4	119
51	9GHB\|1\|b	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	ELECTRON MICROSCOPY	2.21	119
52	9GHA\|1\|b	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	ELECTRON MICROSCOPY	2.24	119
53	9N2C\|1\|5	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	ELECTRON MICROSCOPY	2.4	120
54	7N1P\|1\|5	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	120
55	9N2B\|1\|5	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	ELECTRON MICROSCOPY	2.2	120
56	8CGK\|1\|b	Lincomycin and Avilamycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.64	39
57	6XZ7\|1\|B	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	ELECTRON MICROSCOPY	2.1	120
58	7O1A\|1\|BB	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	120
59	9B4Z\|1\|BB	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	ELECTRON MICROSCOPY	2.2	118
60	9B51\|1\|BB	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	ELECTRON MICROSCOPY	2.4	118
61	7QQ3\|1\|J	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	ELECTRON MICROSCOPY	2.1	118
62	8E49\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC31	ELECTRON MICROSCOPY	2.05	118
63	7S1J\|1\|J	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	118
64	7S1K\|1\|J	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	118
65	7S1H\|1\|J	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	118
66	7S1G\|1\|J	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	118
67	7S1I\|1\|J	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	118
68	8QBT\|1\|B	E. coli ApdP-stalled ribosomal complex	ELECTRON MICROSCOPY	2.2	118
69	8E43\|1\|J	E. coli 50S ribosome bound to compound streptogramin A analog 3336	ELECTRON MICROSCOPY	2.09	118
70	6PCR\|1\|J	E. coli 50S ribosome bound to compound 40o	ELECTRON MICROSCOPY	2.5	118
71	6PC6\|1\|J	E. coli 50S ribosome bound to compound 47	ELECTRON MICROSCOPY	2.5	118
72	6PC7\|1\|J	E. coli 50S ribosome bound to compound 46	ELECTRON MICROSCOPY	2.5	118
73	8E3O\|1\|J	E. coli 50S ribosome bound to solithromycin and VM1	ELECTRON MICROSCOPY	1.99	118
74	8E30\|1\|J	E. coli 50S ribosome bound to compound streptogramin A analog 3142	ELECTRON MICROSCOPY	1.91	118
75	8E33\|1\|J	E. coli 50S ribosome bound to compound streptogramin analog SAB001	ELECTRON MICROSCOPY	2.23	118
76	8E41\|1\|J	E. coli 50S ribosome bound to tiamulin and VS1	ELECTRON MICROSCOPY	2.13	118
77	8E36\|1\|J	E. coli 50S ribosome bound to compound streptogramin A analog 3146	ELECTRON MICROSCOPY	2.38	118
78	8E42\|1\|J	E. coli 50S ribosome bound to tiamulin and azithromycin	ELECTRON MICROSCOPY	2.29	118
79	8E3M\|1\|J	E. coli 50S ribosome bound to L-linker solithromycin conjugate	ELECTRON MICROSCOPY	2.25	118
80	7BL4\|1\|B	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	ELECTRON MICROSCOPY	2.4	119
81	8RQ0\|1\|B	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II	ELECTRON MICROSCOPY	2.44	120
82	8RPZ\|1\|B	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I	ELECTRON MICROSCOPY	2.44	120
83	8RQ2\|1\|B	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III	ELECTRON MICROSCOPY	2.44	120
84	8E46\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC21	ELECTRON MICROSCOPY	2.32	118
85	8E45\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC17	ELECTRON MICROSCOPY	2.3	118
86	8E32\|1\|J	E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1	ELECTRON MICROSCOPY	2.35	118
87	8E3L\|1\|J	E. coli 50S ribosome bound to D-linker solithromycin conjugate	ELECTRON MICROSCOPY	2.35	118
88	8BF7\|1\|1	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.33	120
89	8BIM\|1\|1	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	ELECTRON MICROSCOPY	2.04	120
90	8BIL\|1\|1	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	ELECTRON MICROSCOPY	2.04	120
91	8BHP\|1\|1	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.37	120
92	8BHL\|1\|1	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.21	120
93	8BGE\|1\|1	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.11	120
94	8E48\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC30	ELECTRON MICROSCOPY	2.27	118
95	8E47\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC26	ELECTRON MICROSCOPY	2.32	118
96	8E35\|1\|J	E. coli 50S ribosome bound to compound SAB002	ELECTRON MICROSCOPY	2.27	118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_2.5_10157.170 Current

Release history

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