NR_2.5_10157.180

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8B0X\|1\|b (rep)	5S ribosomal RNA	5S rRNA	Escherichia coli B	Bacteria	RF00001	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	Electron microscopy	1.55	119	2022-11-30
2	9Q87\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli B	Bacteria	RF00001	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	Electron microscopy	1.55	120	2025-05-14
3	9GHE\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	Electron microscopy	1.87	119	2025-03-26
4	8BIL\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	Electron microscopy	2.04	120	2023-08-16
5	8BIM\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	Electron microscopy	2.04	120	2023-08-16
6	9T0Y\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain	Electron microscopy	1.87	120	2026-03-18
7	9T6M\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain	Electron microscopy	1.87	120	2026-03-18
8	7K00\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	119	2020-09-23
9	28UH\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	Electron microscopy	2.06	119	2026-05-20
10	9TQA\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA	Electron microscopy	2.06	119	2026-05-20
11	8CGD\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Clindamycin bound to the 50S subunit	Electron microscopy	1.98	119	2023-07-26
12	9TMI\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome with A- and P-site tRNA	Electron microscopy	2.08	119	2026-05-20
13	9SYH\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from deltaRlmE strain	Electron microscopy	1.89	120	2026-03-18
14	9TNL\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome with A/P- and P/E-site tRNA	Electron microscopy	2.11	119	2026-05-20
15	28UI\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA	Electron microscopy	2.1	119	2026-05-20
16	9GHB\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	Electron microscopy	2.21	119	2025-03-26
17	8BGE\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.11	120	2023-08-16
18	8G6Y\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	Electron microscopy	2.09	119	2023-04-05
19	28UJ\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	Electron microscopy	2.16	119	2026-05-20
20	28UM\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA	Electron microscopy	2.15	119	2026-05-20
21	9GHA\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	Electron microscopy	2.24	119	2025-03-26
22	9JPP\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)	Electron microscopy	2.26	119	2026-03-11
23	9PIJ\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome bound to Minocycline	Electron microscopy	2.2	119	2026-05-13
24	28UK\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA	Electron microscopy	2.24	119	2026-05-20
25	9GHD\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	Electron microscopy	2.41	119	2025-03-26
26	8BHL\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.21	120	2023-08-16
27	30QZ\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome with peptidyl-tRNA and Hsp15	Electron microscopy	2.23	119	2026-05-27
28	8FTO\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome with an improved MS2 tag inserted in H98	Electron microscopy	1.85	119	2023-08-02
29	9GHF\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	Electron microscopy	2.4	119	2025-03-26
30	9B4Z\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	Electron microscopy	2.2	118	2025-08-27
31	8BHP\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.37	120	2023-08-16
32	9D89\|1\|E	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)	Electron microscopy	1.95	119	2025-01-22
33	8E30\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin A analog 3142	Electron microscopy	1.91	118	2023-06-28
34	8BF7\|1\|1	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.33	120	2023-08-16
35	9B51\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	Electron microscopy	2.4	118	2025-08-27
36	9N2B\|1\|5	5S ribosomal RNA	5S ribosomal RNA (rRNA) from the B operon	Escherichia coli K-12	Bacteria	RF00001	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	Electron microscopy	2.2	120	2025-03-19
37	7N1P\|1\|5	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	120	2021-07-14
38	9N2C\|1\|5	5S ribosomal RNA	5S large subunit ribosomal RNA of the H operon	Escherichia coli K-12	Bacteria	RF00001	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	Electron microscopy	2.4	120	2025-03-19
39	9PII\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome bound to Sarecycline	Electron microscopy	2.4	119	2026-05-13
40	8W51\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of YchF(H114A) on E.coli 50S ribosomal subunit	Electron microscopy	2.4	118	2024-08-28
41	7Z20\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	Electron microscopy	2.29	118	2022-08-10
42	8HSP\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	Electron microscopy	2.32	119	2024-04-03
43	8E49\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC31	Electron microscopy	2.05	118	2023-06-28
44	8EMM\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	Electron microscopy	2.1	119	2023-05-31
45	9JPM\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)	Electron microscopy	2.43	119	2026-03-11
46	7LVK\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cfr-modified 50S subunit from Escherichia coli	Electron microscopy	2.2	118	2021-12-15
47	9PIH\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome bound to Doxycycline	Electron microscopy	2.4	119	2026-05-13
48	7S1I\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	118	2022-03-02
49	8G6W\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.02	119	2023-04-05
50	9RBF\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC	Electron microscopy	2.44	119	2026-06-03
51	8YUP\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA	Electron microscopy	2.39	119	2024-11-06
52	7S1H\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	118	2021-11-17
53	8HTZ\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	Electron microscopy	2.4	119	2024-04-03
54	8YUQ\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA	Electron microscopy	2.41	119	2024-11-06
55	7S1G\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	118	2021-11-17
56	8G6X\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.31	119	2023-03-22
57	8IFB\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Dibekacin-bound E.coli 70S ribosome in the PURE system	Electron microscopy	2.43	119	2024-02-14
58	28UN\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA	Electron microscopy	2.48	119	2026-05-20
59	8YUS\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA	Electron microscopy	2.43	119	2024-11-06
60	9H0L\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	Electron microscopy	2.49	119	2025-05-28
61	28UL\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA	Electron microscopy	2.5	119	2026-05-20
62	8E46\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC21	Electron microscopy	2.32	118	2023-06-28
63	8E42\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to tiamulin and azithromycin	Electron microscopy	2.29	118	2023-06-28
64	8E3O\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to solithromycin and VM1	Electron microscopy	1.99	118	2023-06-28
65	8RQ0\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II	Electron microscopy	2.44	120	2024-05-22
66	8RPZ\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I	Electron microscopy	2.44	120	2024-05-22
67	8RQ2\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III	Electron microscopy	2.44	120	2024-05-22
68	8E41\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to tiamulin and VS1	Electron microscopy	2.13	118	2023-06-28
69	8CGV\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Tiamulin bound to the 50S subunit	Electron microscopy	1.66	56	2023-08-02
70	7ZP8\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	Electron microscopy	2.2	118	2022-08-10
71	9O2Y\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl	Electron microscopy	2.14	119	2026-03-18
72	9HYM\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA	Electron microscopy	2.2	118	2026-01-21
73	4YBB\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	120	2015-03-18
74	8E45\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC17	Electron microscopy	2.3	118	2023-06-28
75	8CEU\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Retapamulin and Capreomycin bound to the 50S subunit	Electron microscopy	1.83	119	2023-07-26
76	8YUR\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA	Electron microscopy	2.47	119	2024-11-06
77	6PCR\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 40o	Electron microscopy	2.5	118	2020-06-17
78	8CGK\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Lincomycin and Avilamycin bound to the 50S subunit	Electron microscopy	1.64	39	2023-07-19
79	8YUO\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site	Electron microscopy	2.25	119	2024-11-06
80	8E43\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin A analog 3336	Electron microscopy	2.09	118	2023-06-28
81	8CAM\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Evernimicin bound to the 50S subunit	Electron microscopy	1.86	34	2023-07-26
82	9SLG\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BL21(DE3)	Bacteria	RF00001	Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre	Electron microscopy	2.16	120	2026-04-22
83	8E3M\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to L-linker solithromycin conjugate	Electron microscopy	2.25	118	2023-06-28
84	8EIU\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	Electron microscopy	2.24	119	2023-02-01
85	8E33\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin analog SAB001	Electron microscopy	2.23	118	2023-06-28
86	7Y7G\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	Electron microscopy	2.34	119	2023-10-25
87	7S1K\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	118	2022-01-19
88	7Y7F\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	Electron microscopy	2.43	119	2023-10-25
89	6PJ6\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High resolution cryo-EM structure of E.coli 50S	Electron microscopy	2.2	118	2020-01-22
90	9O2X\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl	Electron microscopy	2.29	119	2026-03-18
91	9HUS\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs	Electron microscopy	2.4	118	2026-01-14
92	7Y7E\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.41	119	2023-10-25
93	6PC7\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 46	Electron microscopy	2.5	118	2020-06-17
94	8E48\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC30	Electron microscopy	2.27	118	2023-06-28
95	6PC6\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 47	Electron microscopy	2.5	118	2020-06-17
96	7BL4\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli K-12	Bacteria	RF00001	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	Electron microscopy	2.4	119	2021-05-12
97	9HUQ\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA	Electron microscopy	2.49	118	2026-01-14
98	8E36\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin A analog 3146	Electron microscopy	2.38	118	2023-06-28
99	8E32\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1	Electron microscopy	2.35	118	2023-06-28
100	9T2N\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 4	Electron microscopy	2.06	4	2026-03-18
101	9T2J\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 0	Electron microscopy	2.02	4	2026-03-18
102	9T2O\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 5	Electron microscopy	2.07	4	2026-03-18
103	9T2P\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 6	Electron microscopy	2.08	4	2026-03-18
104	9T2S\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 9	Electron microscopy	2.07	4	2026-03-18
105	9T8O\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 4	Electron microscopy	2.19	4	2026-03-18
106	9T8Q\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 6	Electron microscopy	2.23	4	2026-03-18
107	9T2M\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 3	Electron microscopy	2.06	4	2026-03-18
108	9T2R\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 8	Electron microscopy	2.22	4	2026-03-18
109	9T8M\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 2	Electron microscopy	2.2	4	2026-03-18
110	8E47\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to antibiotic analog SLC26	Electron microscopy	2.32	118	2023-06-28
111	9T8L\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 1	Electron microscopy	2.21	4	2026-03-18
112	10QM\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E.coli 50S ribosomal subunit bound to compound 48a	Electron microscopy	2.49	118	2026-06-10
113	9T2Q\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 7	Electron microscopy	2.08	4	2026-03-18
114	9T8S\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 8	Electron microscopy	2.22	4	2026-03-18
115	9T8K\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 0	Electron microscopy	2.18	4	2026-03-18
116	9T2K\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 1	Electron microscopy	2.06	4	2026-03-18
117	9T8R\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 7	Electron microscopy	2.22	4	2026-03-18
118	9T2L\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-9 strain, PTC class 2	Electron microscopy	2.07	4	2026-03-18
119	9T8P\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 5	Electron microscopy	2.22	4	2026-03-18
120	9RFW\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Manikomycin bound to the Escherichia coli 50S ribosomal subunit	Electron microscopy	2.4	114	2026-05-27
121	8E3L\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to D-linker solithromycin conjugate	Electron microscopy	2.35	118	2023-06-28
122	9T8T\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 9	Electron microscopy	2.23	4	2026-03-18
123	4YBB\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	118	2015-03-18
124	8E35\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound SAB002	Electron microscopy	2.27	118	2023-06-28
125	9QQQ\|1\|b	5S ribosomal RNA	E. coli 5S rRNA	Escherichia coli B	Bacteria	RF00001	Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)	Electron microscopy	2.26	119	2026-02-18
126	9T8N\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-10 strain, PTC class 3	Electron microscopy	2.22	4	2026-03-18
127	9T1E\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-RlmE strain, PTC class 4	Electron microscopy	2.28	4	2026-03-18
128	9T1H\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-RlmE strain, PTC class 7	Electron microscopy	2.33	4	2026-03-18
129	9RJA\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Manikomycin bound to the Escherichia coli 70S ribosome	Electron microscopy	2.45	114	2026-05-27
130	9T1J\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-RlmE strain, PTC class 9	Electron microscopy	2.23	4	2026-03-18
131	9T1G\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-RlmE strain, PTC class 6	Electron microscopy	2.29	4	2026-03-18
132	9T1F\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-RlmE strain, PTC class 5	Electron microscopy	2.32	4	2026-03-18
133	9T1A\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-RlmE strain, PTC class 1	Electron microscopy	2.39	4	2026-03-18
134	9T1I\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-RlmE strain, PTC class 8	Electron microscopy	2.3	4	2026-03-18
135	9T1B\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-RlmE strain, PTC class 2	Electron microscopy	2.32	4	2026-03-18
136	9T19\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome from delta-RlmE strain, PTC class 0	Electron microscopy	2.41	4	2026-03-18
137	8AYE\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	Electron microscopy	1.96	119	2023-03-01
138	8QOA\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	Structure of SecM-stalled Escherichia coli 70S ribosome	Electron microscopy	2	119	2024-03-20
139	8ANA\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	Electron microscopy	2.1	119	2023-03-08
140	7QQ3\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli K-12	Bacteria	RF00001	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	Electron microscopy	2.1	118	2023-01-18
141	6XZ7\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	Electron microscopy	2.1	120	2020-07-22
142	8R6C\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	Electron microscopy	2.2	119	2024-07-24
143	8QBT\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli BW25113	Bacteria	RF00001	E. coli ApdP-stalled ribosomal complex	Electron microscopy	2.2	118	2024-03-20
144	8AKN\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	Electron microscopy	2.3	119	2023-03-08
145	7PJS\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	120	2021-10-20
146	7O1A\|1\|BB	5S ribosomal RNA	Ribosomal RNA 5S	Escherichia coli K-12	Bacteria	RF00001	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	120	2021-09-01
147	8R8M\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.	Electron microscopy	2.4	119	2024-07-24
148	9FBV\|1\|b	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF00001	70S Escherichia coli ribosome with P-site initiatior tRNA.	Electron microscopy	2.4	119	2024-06-26
149	7S1J\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	118	2022-03-02

Release history

Release	4.43
Date	2026-06-10

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	7ZP8\|1\|a	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.2	118
2	9HUS\|1\|a	Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs	ELECTRON MICROSCOPY	2.4	118
3	9HYM\|1\|a	Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA	ELECTRON MICROSCOPY	2.2	118
4	9HUQ\|1\|a	Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA	ELECTRON MICROSCOPY	2.49	118
5	8E47\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC26	ELECTRON MICROSCOPY	2.32	118
6	8E35\|1\|J	E. coli 50S ribosome bound to compound SAB002	ELECTRON MICROSCOPY	2.27	118
7	8E48\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC30	ELECTRON MICROSCOPY	2.27	118
8	8BGE\|1\|1	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.11	120
9	8BHL\|1\|1	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.21	120
10	8BIL\|1\|1	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	ELECTRON MICROSCOPY	2.04	120
11	8BIM\|1\|1	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	ELECTRON MICROSCOPY	2.04	120
12	8BHP\|1\|1	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.37	120
13	8BF7\|1\|1	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.33	120
14	8E3L\|1\|J	E. coli 50S ribosome bound to D-linker solithromycin conjugate	ELECTRON MICROSCOPY	2.35	118
15	8E32\|1\|J	E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1	ELECTRON MICROSCOPY	2.35	118
16	8E46\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC21	ELECTRON MICROSCOPY	2.32	118
17	8E45\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC17	ELECTRON MICROSCOPY	2.3	118
18	7Z20\|1\|a	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.29	118
19	9B4Z\|1\|BB	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	ELECTRON MICROSCOPY	2.2	118
20	9B51\|1\|BB	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	ELECTRON MICROSCOPY	2.4	118
21	7O1A\|1\|BB	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	120
22	7QQ3\|1\|J	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	ELECTRON MICROSCOPY	2.1	118
23	8E49\|1\|J	E. coli 50S ribosome bound to antibiotic analog SLC31	ELECTRON MICROSCOPY	2.05	118
24	8E36\|1\|J	E. coli 50S ribosome bound to compound streptogramin A analog 3146	ELECTRON MICROSCOPY	2.38	118
25	8E41\|1\|J	E. coli 50S ribosome bound to tiamulin and VS1	ELECTRON MICROSCOPY	2.13	118
26	8E33\|1\|J	E. coli 50S ribosome bound to compound streptogramin analog SAB001	ELECTRON MICROSCOPY	2.23	118
27	8E30\|1\|J	E. coli 50S ribosome bound to compound streptogramin A analog 3142	ELECTRON MICROSCOPY	1.91	118
28	8E3O\|1\|J	E. coli 50S ribosome bound to solithromycin and VM1	ELECTRON MICROSCOPY	1.99	118
29	6PC7\|1\|J	E. coli 50S ribosome bound to compound 46	ELECTRON MICROSCOPY	2.5	118
30	6PC6\|1\|J	E. coli 50S ribosome bound to compound 47	ELECTRON MICROSCOPY	2.5	118
31	6PCR\|1\|J	E. coli 50S ribosome bound to compound 40o	ELECTRON MICROSCOPY	2.5	118
32	8E43\|1\|J	E. coli 50S ribosome bound to compound streptogramin A analog 3336	ELECTRON MICROSCOPY	2.09	118
33	10QM\|1\|J	E.coli 50S ribosomal subunit bound to compound 48a	ELECTRON MICROSCOPY	2.49	118
34	7S1J\|1\|J	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	118
35	7S1I\|1\|J	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	118
36	7S1G\|1\|J	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	118
37	7S1H\|1\|J	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	118
38	7S1K\|1\|J	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	118
39	8QBT\|1\|B	E. coli ApdP-stalled ribosomal complex	ELECTRON MICROSCOPY	2.2	118
40	8E42\|1\|J	E. coli 50S ribosome bound to tiamulin and azithromycin	ELECTRON MICROSCOPY	2.29	118
41	8E3M\|1\|J	E. coli 50S ribosome bound to L-linker solithromycin conjugate	ELECTRON MICROSCOPY	2.25	118
42	7BL4\|1\|B	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	ELECTRON MICROSCOPY	2.4	119
43	8RPZ\|1\|B	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I	ELECTRON MICROSCOPY	2.44	120
44	8RQ0\|1\|B	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II	ELECTRON MICROSCOPY	2.44	120
45	8RQ2\|1\|B	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III	ELECTRON MICROSCOPY	2.44	120
46	9D89\|1\|E	E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)	ELECTRON MICROSCOPY	1.95	119
47	9N2C\|1\|5	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	ELECTRON MICROSCOPY	2.4	120
48	9PIJ\|1\|b	E. coli 70S ribosome bound to Minocycline	ELECTRON MICROSCOPY	2.2	119
49	9PIH\|1\|b	E. coli 70S ribosome bound to Doxycycline	ELECTRON MICROSCOPY	2.4	119
50	9PII\|1\|b	E. coli 70S ribosome bound to Sarecycline	ELECTRON MICROSCOPY	2.4	119
51	7Y7G\|1\|b	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	ELECTRON MICROSCOPY	2.34	119
52	7Y7E\|1\|b	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.41	119
53	7Y7F\|1\|b	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	ELECTRON MICROSCOPY	2.43	119
54	8B0X\|1\|b	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	ELECTRON MICROSCOPY	1.55	119
55	9Q87\|1\|b	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	ELECTRON MICROSCOPY	1.55	120
56	9JPP\|1\|b	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)	ELECTRON MICROSCOPY	2.26	119
57	9H0L\|1\|b	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	ELECTRON MICROSCOPY	2.49	119
58	9RJA\|1\|b	Manikomycin bound to the Escherichia coli 70S ribosome	ELECTRON MICROSCOPY	2.45	114
59	9RFW\|1\|b	Manikomycin bound to the Escherichia coli 50S ribosomal subunit	ELECTRON MICROSCOPY	2.4	114
60	8YUQ\|1\|b	E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA	ELECTRON MICROSCOPY	2.41	119
61	8YUS\|1\|b	E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA	ELECTRON MICROSCOPY	2.43	119
62	8YUR\|1\|b	E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA	ELECTRON MICROSCOPY	2.47	119
63	8HSP\|1\|b	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	ELECTRON MICROSCOPY	2.32	119
64	8YUO\|1\|b	E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site	ELECTRON MICROSCOPY	2.25	119
65	8YUP\|1\|b	E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA	ELECTRON MICROSCOPY	2.39	119
66	8HTZ\|1\|b	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	ELECTRON MICROSCOPY	2.4	119
67	8FTO\|1\|b	E. coli 70S ribosome with an improved MS2 tag inserted in H98	ELECTRON MICROSCOPY	1.85	119
68	9RBF\|1\|b	Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC	ELECTRON MICROSCOPY	2.44	119
69	8IFB\|1\|b	Dibekacin-bound E.coli 70S ribosome in the PURE system	ELECTRON MICROSCOPY	2.43	119
70	9JPM\|1\|b	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)	ELECTRON MICROSCOPY	2.43	119
71	8EIU\|1\|b	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	ELECTRON MICROSCOPY	2.24	119
72	8G6X\|1\|b	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.31	119
73	9O2Y\|1\|b	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl	ELECTRON MICROSCOPY	2.14	119
74	8EMM\|1\|b	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	ELECTRON MICROSCOPY	2.1	119
75	9O2X\|1\|b	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl	ELECTRON MICROSCOPY	2.29	119
76	8G6W\|1\|b	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.02	119
77	8G6Y\|1\|b	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.09	119
78	7K00\|1\|b	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	119
79	8AYE\|1\|b	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	ELECTRON MICROSCOPY	1.96	119
80	9QQQ\|1\|b	Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)	ELECTRON MICROSCOPY	2.26	119
81	9FBV\|1\|b	70S Escherichia coli ribosome with P-site initiatior tRNA.	ELECTRON MICROSCOPY	2.4	119
82	8R6C\|1\|b	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	ELECTRON MICROSCOPY	2.2	119
83	8AKN\|1\|b	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	ELECTRON MICROSCOPY	2.3	119
84	8CGV\|1\|b	Tiamulin bound to the 50S subunit	ELECTRON MICROSCOPY	1.66	56
85	8ANA\|1\|b	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	ELECTRON MICROSCOPY	2.1	119
86	30QZ\|1\|b	E. coli 50S ribosome with peptidyl-tRNA and Hsp15	ELECTRON MICROSCOPY	2.23	119
87	8CEU\|1\|b	Retapamulin and Capreomycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.83	119
88	8R8M\|1\|b	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.	ELECTRON MICROSCOPY	2.4	119
89	4YBB\|1\|DB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	120
90	4YBB\|1\|CB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	118
91	7LVK\|1\|J	Cfr-modified 50S subunit from Escherichia coli	ELECTRON MICROSCOPY	2.2	118
92	6PJ6\|1\|J	High resolution cryo-EM structure of E.coli 50S	ELECTRON MICROSCOPY	2.2	118
93	8W51\|1\|B	Structure of YchF(H114A) on E.coli 50S ribosomal subunit	ELECTRON MICROSCOPY	2.4	118
94	7PJS\|1\|B	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	120
95	6XZ7\|1\|B	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	ELECTRON MICROSCOPY	2.1	120
96	8QOA\|1\|b	Structure of SecM-stalled Escherichia coli 70S ribosome	ELECTRON MICROSCOPY	2	119
97	9SLG\|1\|b	Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre	ELECTRON MICROSCOPY	2.16	120
98	9GHB\|1\|b	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	ELECTRON MICROSCOPY	2.21	119
99	9GHF\|1\|b	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	ELECTRON MICROSCOPY	2.4	119
100	9GHE\|1\|b	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	ELECTRON MICROSCOPY	1.87	119
101	9GHD\|1\|b	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	ELECTRON MICROSCOPY	2.41	119
102	9GHA\|1\|b	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	ELECTRON MICROSCOPY	2.24	119
103	9TQA\|1\|b	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.06	119
104	28UI\|1\|b	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.1	119
105	9TMI\|1\|b	E. coli 70S ribosome with A- and P-site tRNA	ELECTRON MICROSCOPY	2.08	119
106	28UM\|1\|b	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.15	119
107	28UK\|1\|b	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.24	119
108	7N1P\|1\|5	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	120
109	9SYH\|1\|b	E. coli 70S ribosome from deltaRlmE strain	ELECTRON MICROSCOPY	1.89	120
110	9T0Y\|1\|b	E. coli 70S ribosome from delta-9 strain	ELECTRON MICROSCOPY	1.87	120
111	9T6M\|1\|b	E. coli 70S ribosome from delta-10 strain	ELECTRON MICROSCOPY	1.87	120
112	9N2B\|1\|5	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	ELECTRON MICROSCOPY	2.2	120
113	8CGK\|1\|b	Lincomycin and Avilamycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.64	39
114	28UJ\|1\|b	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.16	119
115	28UH\|1\|b	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.06	119
116	9TNL\|1\|b	E. coli 70S ribosome with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.11	119
117	28UL\|1\|b	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.5	119
118	28UN\|1\|b	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.48	119
119	8CGD\|1\|b	Clindamycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.98	119
120	8CAM\|1\|b	Evernimicin bound to the 50S subunit	ELECTRON MICROSCOPY	1.86	34
121	9T8S\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 8	ELECTRON MICROSCOPY	2.22	4
122	9T8R\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 7	ELECTRON MICROSCOPY	2.22	4
123	9T8L\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 1	ELECTRON MICROSCOPY	2.21	4
124	9T8K\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 0	ELECTRON MICROSCOPY	2.18	4
125	9T8Q\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 6	ELECTRON MICROSCOPY	2.23	4
126	9T2O\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 5	ELECTRON MICROSCOPY	2.07	4
127	9T2P\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 6	ELECTRON MICROSCOPY	2.08	4
128	9T2M\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 3	ELECTRON MICROSCOPY	2.06	4
129	9T2S\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 9	ELECTRON MICROSCOPY	2.07	4
130	9T8N\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 3	ELECTRON MICROSCOPY	2.22	4
131	9T8P\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 5	ELECTRON MICROSCOPY	2.22	4
132	9T2R\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 8	ELECTRON MICROSCOPY	2.22	4
133	9T8M\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 2	ELECTRON MICROSCOPY	2.2	4
134	9T2N\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 4	ELECTRON MICROSCOPY	2.06	4
135	9T2J\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 0	ELECTRON MICROSCOPY	2.02	4
136	9T8O\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 4	ELECTRON MICROSCOPY	2.19	4
137	9T8T\|1\|b	E. coli 70S ribosome from delta-10 strain, PTC class 9	ELECTRON MICROSCOPY	2.23	4
138	9T19\|1\|b	E. coli 70S ribosome from delta-RlmE strain, PTC class 0	ELECTRON MICROSCOPY	2.41	4
139	9T1J\|1\|b	E. coli 70S ribosome from delta-RlmE strain, PTC class 9	ELECTRON MICROSCOPY	2.23	4
140	9T1I\|1\|b	E. coli 70S ribosome from delta-RlmE strain, PTC class 8	ELECTRON MICROSCOPY	2.3	4
141	9T1G\|1\|b	E. coli 70S ribosome from delta-RlmE strain, PTC class 6	ELECTRON MICROSCOPY	2.29	4
142	9T1H\|1\|b	E. coli 70S ribosome from delta-RlmE strain, PTC class 7	ELECTRON MICROSCOPY	2.33	4
143	9T1A\|1\|b	E. coli 70S ribosome from delta-RlmE strain, PTC class 1	ELECTRON MICROSCOPY	2.39	4
144	9T2L\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 2	ELECTRON MICROSCOPY	2.07	4
145	9T1E\|1\|b	E. coli 70S ribosome from delta-RlmE strain, PTC class 4	ELECTRON MICROSCOPY	2.28	4
146	9T1F\|1\|b	E. coli 70S ribosome from delta-RlmE strain, PTC class 5	ELECTRON MICROSCOPY	2.32	4
147	9T2Q\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 7	ELECTRON MICROSCOPY	2.08	4
148	9T2K\|1\|b	E. coli 70S ribosome from delta-9 strain, PTC class 1	ELECTRON MICROSCOPY	2.06	4
149	9T1B\|1\|b	E. coli 70S ribosome from delta-RlmE strain, PTC class 2	ELECTRON MICROSCOPY	2.32	4

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_2.5_10157.180 Current

Release history

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