Equivalence class NR_2.5_18586.57 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 7UOO|1|3 (rep) | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state | Electron microscopy | 2.34 | 2023-03-15 |
2 | 7V08|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain | Electron microscopy | 2.36 | 2023-03-15 |
3 | 7ZW0|1|LC | 5S ribosomal RNA | 5S ribosomal RNA (RDN5-1) | Saccharomyces cerevisiae W303 | Eukarya | RF00001 | FAP-80S Complex - Rotated state | Electron microscopy | 2.4 | 2022-10-05 |
4 | 8AGX|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | Electron microscopy | 2.4 | 2023-03-08 |
5 | 7TOP|1|A5S | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | Electron microscopy | 2.4 | 2022-05-25 |
6 | 7UQB|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4 | Electron microscopy | 2.43 | 2023-03-15 |
7 | 7UQZ|1|3 | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF00001 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain | Electron microscopy | 2.44 | 2023-03-15 |
8 | 7ZUX|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Collided ribosome in a disome unit from S. cerevisiae | Electron microscopy | 2.5 | 2023-02-22 |
9 | 8AAF|1|h | 5S ribosomal RNA | 5S rRNA | Saccharomyces cerevisiae | Eukarya | RF00001 | Yeast RQC complex in state G | Electron microscopy | 2.5 | 2023-03-08 |
Release history
Parents
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 7ZUX|1|4 | Collided ribosome in a disome unit from S. cerevisiae | ELECTRON MICROSCOPY | 2.5 | 121 | |
2 | 7ZW0|1|LC | FAP-80S Complex - Rotated state | ELECTRON MICROSCOPY | 2.4 | 121 | |
3 | 8AGX|1|h | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | ELECTRON MICROSCOPY | 2.4 | 121 | |
4 | 8AAF|1|h | Yeast RQC complex in state G | ELECTRON MICROSCOPY | 2.5 | 121 | |
5 | 7TOP|1|A5S | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | ELECTRON MICROSCOPY | 2.4 | 121 | |
6 | 7UQB|1|3 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4 | ELECTRON MICROSCOPY | 2.43 | 120 | |
7 | 7UOO|1|3 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state | ELECTRON MICROSCOPY | 2.34 | 120 | |
8 | 7UQZ|1|3 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain | ELECTRON MICROSCOPY | 2.44 | 120 | |
9 | 7V08|1|3 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain | ELECTRON MICROSCOPY | 2.36 | 120 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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