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Equivalence class NR_2.5_18586.74 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18CCS|1|BB (rep)5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexElectron microscopy1.971212023-09-20
28CDR|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.041212023-09-20
38CEH|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.051212023-09-20
48P8N|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Mouse RPL39 integrated into the yeast 60S ribosomal subunitElectron microscopy2.151212024-06-12
58PFR|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Mouse RPL39L integrated into the yeast 60S ribosomal subunitElectron microscopy2.151212024-06-26
68EVT|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapElectron microscopy2.21212023-09-06
78T2Y|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREElectron microscopy2.21212024-12-11
88P8U|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 60S ribosomal subunitElectron microscopy2.231212024-06-12
98CGN|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Non-rotated 80S S. cerevisiae ribosome with ligandsElectron microscopy2.281212023-09-20
107UOO|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.341212023-03-15
117V08|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.361212023-03-15
128EVP|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.381212023-09-06
137ZW0|1|LC5S ribosomal RNA5S ribosomal RNA (RDN5-1)Saccharomyces cerevisiae W303EukaryaRF00001FAP-80S Complex - Rotated stateElectron microscopy2.41212022-10-05
148AGX|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.41212023-03-08
158T2Z|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTElectron microscopy2.41212024-12-11
168BN3|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S, ES7s delta, eIF5A, Stm1 containingElectron microscopy2.41212024-01-10
178ZHC|1|LB5S ribosomal RNA5S rRNA (121-MER)Saccharomyces cerevisiae S288CEukaryaRF00001pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVElectron microscopy2.31212025-05-21
187TOP|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.41212022-05-25
197UQB|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.431212023-03-15
207UQZ|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.441212023-03-15
218EWC|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.451212023-09-06
228T2X|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREElectron microscopy2.461212024-12-11
238CIV|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.471212023-09-20
247ZUX|1|45S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Collided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.51212023-02-22
258AAF|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state GElectron microscopy2.51212023-03-08

Release history

Release3.391
Date2025-06-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18ZHC|1|LBpre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVELECTRON MICROSCOPY2.3121
28CCS|1|BB80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexELECTRON MICROSCOPY1.97121
38CEH|1|BBTranslocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.05121
48CDR|1|BBTranslocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.04121
58CIV|1|BBTranslocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.47121
68CGN|1|BBNon-rotated 80S S. cerevisiae ribosome with ligandsELECTRON MICROSCOPY2.28121
78T2Y|1|A3Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREELECTRON MICROSCOPY2.2121
88T2X|1|A3Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREELECTRON MICROSCOPY2.46121
98T2Z|1|A3Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTELECTRON MICROSCOPY2.4121
108EVP|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.38121
118EVT|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapELECTRON MICROSCOPY2.2121
128EWC|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.45121
137ZUX|1|4Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.5121
147ZW0|1|LCFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.4121
158AGX|1|hYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.4121
168AAF|1|hYeast RQC complex in state GELECTRON MICROSCOPY2.5121
178BN3|1|3Yeast 80S, ES7s delta, eIF5A, Stm1 containingELECTRON MICROSCOPY2.4121
187TOP|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.4121
198P8U|1|LEYeast 60S ribosomal subunitELECTRON MICROSCOPY2.23121
208PFR|1|LEMouse RPL39L integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.15121
218P8N|1|LEMouse RPL39 integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.15121
227UQB|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.43121
237UOO|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.34121
247UQZ|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.44121
257V08|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.36121

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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