NR_2.5_35542.162

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	9GHE\|1\|Z (rep)	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	Electron microscopy	1.87	76	2025-03-26
2	8B0X\|1\|Z	Transfer RNA	mRNA, P-site tRNA	Escherichia coli B	Bacteria	RF00005	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	Electron microscopy	1.55	75	2022-11-30
3	9Q87\|1\|Z	Transfer RNA	mRNA, P-site tRNA	Escherichia coli B	Bacteria	RF00005	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	Electron microscopy	1.55	77	2025-05-14
4	9GHG\|1\|F	Transfer RNA	E-site tRNA, mRNA	Escherichia coli K-12	Bacteria	RF00005	Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)	Electron microscopy	2.22	76	2025-03-26
5	9T4R\|1\|Z	Transfer RNA	Methionine tRNA	Escherichia coli	Bacteria	RF00005	Staphylococcus aureus 70S initiation complex with a natural mRNA	Electron microscopy	2.3	76	2026-02-25
6	9GHD\|1\|Z	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	Electron microscopy	2.41	76	2025-03-26
7	9JPP\|1\|Z	Transfer RNA	mRNA, P-site tRNA-fMet	Escherichia coli BW25113	Bacteria	RF00005	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)	Electron microscopy	2.26	77	2026-03-11
8	8BIL\|1\|4	Transfer RNA	Acylated P-site tRNA(fMet), mRNA	Escherichia coli K-12	Bacteria	RF00005	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	Electron microscopy	2.04	77	2023-08-16
9	9N2B\|1\|Pt	Transfer RNA	N-formyl-methionine initiator tRNA (fMet-tRNAfMet), Synthetic messenger RNA (mRNA) 60 bp in length	Escherichia coli K-12	Bacteria	RF00005	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	Electron microscopy	2.2	77	2025-03-19
10	9G6J\|1\|PT	Transfer RNA	mRNA, tRNA-fMet	Escherichia coli	Bacteria	RF00005	The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA	Electron microscopy	2.15	76	2025-04-23
11	9GHB\|1\|Z	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	Electron microscopy	2.21	76	2025-03-26
12	9N2C\|1\|Pt	Transfer RNA	N-formyl-methionine initiator tRNA (fMet-tRNAfMet), Synthetic messenger RNA (mRNA) 60 bp in length	Escherichia coli K-12	Bacteria	RF00005	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	Electron microscopy	2.4	77	2025-03-19
13	9SYH\|1\|Z	Transfer RNA	mRNA, tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from deltaRlmE strain	Electron microscopy	1.89	73	2026-03-18
14	8BIM\|1\|4	Transfer RNA	Acylated P-site tRNA(fMet), mRNA	Escherichia coli K-12	Bacteria	RF00005	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	Electron microscopy	2.04	77	2023-08-16
15	9JPM\|1\|Z	Transfer RNA	mRNA, P-site tRNA-fMet	Escherichia coli BW25113	Bacteria	RF00005	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)	Electron microscopy	2.43	77	2026-03-11
16	9B4Z\|1\|AX	Transfer RNA	mRNA, tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	Electron microscopy	2.2	77	2025-08-27
17	9GHF\|1\|Z	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	Electron microscopy	2.4	76	2025-03-26
18	9DFC\|1\|1x	Transfer RNA	P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	77	2024-11-20
19	9D0I\|1\|1x	Transfer RNA	MF-mRNA, P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	76	2025-08-27
20	9T2K\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain, PTC class 1	Electron microscopy	2.06	18	2026-03-18
21	9GHA\|1\|8	Transfer RNA	mRNA, tRNA	Escherichia coli K-12	Bacteria	RF00005	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	Electron microscopy	2.24	77	2025-03-26
22	8G2A\|1\|1x	Transfer RNA	P-site Peptidyl-tRNA fMTHSMRC-tRNAmet RNA-part	Escherichia coli	Bacteria	RF00005	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	77	2023-12-27
23	9D0J\|1\|1x	Transfer RNA	P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	76	2024-11-20
24	9DFC\|1\|2x	Transfer RNA	P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	77	2024-11-20
25	8VTU\|1\|1x	Transfer RNA	Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	77	2024-08-07
26	9D0G\|1\|1x	Transfer RNA	MF-mRNA, P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	76	2025-08-27
27	9B51\|1\|AX	Transfer RNA	mRNA, tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	Electron microscopy	2.4	77	2025-08-27
28	8G2A\|1\|2x	Transfer RNA	P-site Peptidyl-tRNA fMTHSMRC-tRNAmet RNA-part	Escherichia coli	Bacteria	RF00005	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	77	2023-12-27
29	9D0H\|1\|1x	Transfer RNA	MF-mRNA, P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	76	2025-08-27
30	8VTU\|1\|2x	Transfer RNA	Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	77	2024-08-07
31	8VTX\|1\|1x	Transfer RNA	Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	77	2024-08-07
32	8EMM\|1\|Z	Transfer RNA	Met-NH-tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	Electron microscopy	2.1	76	2023-05-31
33	9H0L\|1\|Z	Transfer RNA	mRNA, tRNA(fMet)	Escherichia coli	Bacteria	RF00005	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	Electron microscopy	2.49	76	2025-05-28
34	8VTX\|1\|2x	Transfer RNA	Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	77	2024-08-07
35	8BHP\|1\|4	Transfer RNA	Deacylated P-site tRNA(fMet), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.37	77	2023-08-16
36	9D0J\|1\|2x	Transfer RNA	P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	76	2024-11-20
37	7RQ8\|1\|1x	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	76	2021-10-13
38	9T0Y\|1\|Z	Transfer RNA	mRNA, tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain	Electron microscopy	1.87	73	2026-03-18
39	9D0I\|1\|2x	Transfer RNA	MF-mRNA, P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	76	2025-08-27
40	7RQ8\|1\|2x	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	76	2021-10-13
41	9T2Q\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain, PTC class 7	Electron microscopy	2.08	18	2026-03-18
42	6XHW\|1\|1x	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	76	2020-12-23
43	8BGE\|1\|4	Transfer RNA	Acylated P-site tRNA(fMet), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.11	77	2023-08-16
44	8CVK\|1\|1x	Transfer RNA	MF-mRNA, P-site Peptidyl-tRNA fMRC-NH-tRNAmet RNA-part	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	77	2022-10-19
45	8EIU\|1\|Z	Transfer RNA	mRNA, tRNA-fMET	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	Electron microscopy	2.24	74	2023-02-01
46	10PX\|1\|1x	Transfer RNA	MET-PHE-mRNA, P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	77	2026-03-11
47	9T2S\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain, PTC class 9	Electron microscopy	2.07	18	2026-03-18
48	6XHV\|1\|1x	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	76	2020-12-23
49	8CVK\|1\|2x	Transfer RNA	MF-mRNA, P-site Peptidyl-tRNA fMRC-NH-tRNAmet RNA-part	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	77	2022-10-19
50	8FTO\|1\|Z	Transfer RNA	mRNA, P-site tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome with an improved MS2 tag inserted in H98	Electron microscopy	1.85	76	2023-08-02
51	6XHW\|1\|2x	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	76	2020-12-23
52	8CDR\|1\|Cc	Transfer RNA	Messenger RNA, Transfer RNA fMet	Escherichia coli	Bacteria	RF00005	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.04	77	2023-09-20
53	9T2L\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain, PTC class 2	Electron microscopy	2.07	18	2026-03-18
54	9D0G\|1\|2x	Transfer RNA	MF-mRNA, P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	76	2025-08-27
55	8BHL\|1\|4	Transfer RNA	Acylated P-site tRNA(fMet), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.21	77	2023-08-16
56	6XHV\|1\|2x	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	76	2020-12-23
57	8CVJ\|1\|1x	Transfer RNA	MF-mRNA, P-site Peptidyl-tRNA fMSEAC-NH-tRNAmet RNA-part	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	77	2022-10-19
58	4Y4P\|1\|1x	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	76	2015-03-18
59	8CVJ\|1\|2x	Transfer RNA	MF-mRNA, P-site Peptidyl-tRNA fMSEAC-NH-tRNAmet RNA-part	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	77	2022-10-19
60	4W2F\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	76	2014-10-15
61	8CVL\|1\|1x	Transfer RNA	MF-mRNA, P-site Peptidyl-tRNA fMTHSMRC-NH-tRNAmet RNA-part	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-ray diffraction	2.3	77	2022-10-19
62	8CVL\|1\|2x	Transfer RNA	MF-mRNA, P-site Peptidyl-tRNA fMTHSMRC-NH-tRNAmet RNA-part	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-ray diffraction	2.3	77	2022-10-19
63	9D0H\|1\|2x	Transfer RNA	MF-mRNA, P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	76	2025-08-27
64	8CGN\|1\|Bb	Transfer RNA	Messenger RNA, Transfer RNA fMet	Escherichia coli	Bacteria	RF00005	Non-rotated 80S S. cerevisiae ribosome with ligands	Electron microscopy	2.28	77	2023-09-20
65	4W2F\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	76	2014-10-15
66	4Y4P\|1\|2x	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	76	2015-03-18
67	10PX\|1\|2x	Transfer RNA	MET-PHE-mRNA, P-site Aminoacylated fMet-tRNAmet	Escherichia coli	Bacteria	RF00005	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	77	2026-03-11
68	8IFB\|1\|6	Transfer RNA	mRNA, P-site tRNA-fMet	Escherichia coli	Bacteria	RF00005	Dibekacin-bound E.coli 70S ribosome in the PURE system	Electron microscopy	2.43	77	2024-02-14
69	7K00\|1\|Z	Transfer RNA	mRNA, P-site tRNA-fMet	Escherichia coli	Bacteria	RF00005	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	76	2020-09-23
70	8CEH\|1\|Cc	Transfer RNA	Messenger RNA, Transfer RNA fMet	Escherichia coli	Bacteria	RF00005	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.05	77	2023-09-20
71	7Y7G\|1\|Z	Transfer RNA	mRNA, P-site tRNA-fMet	Escherichia coli	Bacteria	RF00005	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	Electron microscopy	2.34	77	2023-10-25
72	8BF7\|1\|4	Transfer RNA	Deacylated P-site tRNA(fMet), mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.33	77	2023-08-16
73	7Y7E\|1\|Z	Transfer RNA	mRNA, P-site tRNA-fMet	Escherichia coli	Bacteria	RF00005	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.41	77	2023-10-25
74	9T1B\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-RlmE strain, PTC class 2	Electron microscopy	2.32	18	2026-03-18
75	7Y7F\|1\|Z	Transfer RNA	mRNA, P-site tRNA-fMet	Escherichia coli	Bacteria	RF00005	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	Electron microscopy	2.43	77	2023-10-25
76	9T8N\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-10 strain, PTC class 3	Electron microscopy	2.22	18	2026-03-18
77	9T1A\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-RlmE strain, PTC class 1	Electron microscopy	2.39	18	2026-03-18
78	8EMM\|1\|Y	Transfer RNA	Met-NH-tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	Electron microscopy	2.1	76	2023-05-31
79	9QQQ\|1\|Z	Transfer RNA	ermBL mRNA transcript, P-site tRNA-fMet	Escherichia coli B	Bacteria	RF00005	Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)	Electron microscopy	2.26	73	2026-02-18
80	9O2Y\|1\|Z	Transfer RNA	mRNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl	Electron microscopy	2.14	76	2026-03-18
81	9T2N\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain, PTC class 4	Electron microscopy	2.06	18	2026-03-18
82	8G6W\|1\|Z	Transfer RNA	mRNA, P-site fMet-tRNAfMet	Escherichia coli	Bacteria	RF00005	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.02	75	2023-04-05
83	9T1G\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-RlmE strain, PTC class 6	Electron microscopy	2.29	18	2026-03-18
84	9T2M\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain, PTC class 3	Electron microscopy	2.06	18	2026-03-18
85	8G6Y\|1\|Z	Transfer RNA	mRNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	Electron microscopy	2.09	75	2023-04-05
86	9T6M\|1\|Z	Transfer RNA	mRNA, tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-10 strain	Electron microscopy	1.87	73	2026-03-18
87	9T1F\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-RlmE strain, PTC class 5	Electron microscopy	2.32	18	2026-03-18
88	9T8T\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-10 strain, PTC class 9	Electron microscopy	2.23	18	2026-03-18
89	9T2P\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain, PTC class 6	Electron microscopy	2.08	18	2026-03-18
90	9GHG\|1\|D	Transfer RNA	E-site tRNA	Escherichia coli K-12	Bacteria	RF00005	Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)	Electron microscopy	2.22	77	2025-03-26
91	9GUU\|1\|W	Transfer RNA	tRNA(fmet) P-site	Escherichia coli K-12	Bacteria	RF00005	30S mRNA delivery complex (consensus)	Electron microscopy	2.5	77	2024-11-20
92	9H0L\|1\|V	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	Electron microscopy	2.49	76	2025-05-28
93	8G6X\|1\|Z	Transfer RNA	mRNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.31	75	2023-03-22
94	8EIU\|1\|Y	Transfer RNA	mRNA, tRNA-fMET	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	Electron microscopy	2.24	74	2023-02-01
95	9T19\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-RlmE strain, PTC class 0	Electron microscopy	2.41	18	2026-03-18
96	9T2R\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain, PTC class 8	Electron microscopy	2.22	18	2026-03-18
97	9T8R\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-10 strain, PTC class 7	Electron microscopy	2.22	18	2026-03-18
98	9O2X\|1\|Z	Transfer RNA	mRNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl	Electron microscopy	2.29	76	2026-03-18
99	9G6J\|1\|AT	Transfer RNA	tRNA-fMet	Escherichia coli	Bacteria	RF00005	The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA	Electron microscopy	2.15	76	2025-04-23
100	9T1J\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-RlmE strain, PTC class 9	Electron microscopy	2.23	18	2026-03-18
101	9T8Q\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-10 strain, PTC class 6	Electron microscopy	2.23	18	2026-03-18
102	9T1I\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-RlmE strain, PTC class 8	Electron microscopy	2.3	18	2026-03-18
103	9SYH\|1\|5	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from deltaRlmE strain	Electron microscopy	1.89	71	2026-03-18
104	9T0Y\|1\|5	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain	Electron microscopy	1.87	71	2026-03-18
105	7TOP\|1\|APTN	Transfer RNA	tRNAfMet	Escherichia coli	Bacteria	RF00005	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20	Electron microscopy	2.4	77	2022-05-25
106	9T1H\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-RlmE strain, PTC class 7	Electron microscopy	2.33	18	2026-03-18
107	9T1E\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-RlmE strain, PTC class 4	Electron microscopy	2.28	18	2026-03-18
108	9T6M\|1\|5	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-10 strain	Electron microscopy	1.87	71	2026-03-18
109	9T2O\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-9 strain, PTC class 5	Electron microscopy	2.07	18	2026-03-18
110	8CGN\|1\|Cc	Transfer RNA	Transfer RNA fMet	Escherichia coli	Bacteria	RF00005	Non-rotated 80S S. cerevisiae ribosome with ligands	Electron microscopy	2.28	77	2023-09-20
111	9T8S\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-10 strain, PTC class 8	Electron microscopy	2.22	18	2026-03-18
112	9T8P\|1\|Z	Transfer RNA	tRNA(fMet)	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome from delta-10 strain, PTC class 5	Electron microscopy	2.22	18	2026-03-18
113	8CCS\|1\|Cc	Transfer RNA	Messenger RNA, Transfer RNA fMet	Escherichia coli	Bacteria	RF00005	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	Electron microscopy	1.97	77	2023-09-20
114	8CIV\|1\|Cc	Transfer RNA	Messenger RNA, Transfer RNA fMet	Escherichia coli	Bacteria	RF00005	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.47	77	2023-09-20
115	8AYE\|1\|Z	Transfer RNA	mRNA, P-site tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	Electron microscopy	1.96	76	2023-03-01
116	8P2G\|1\|D	Transfer RNA	mRNA, tRNA	Escherichia coli	Bacteria	RF00005	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state	Electron microscopy	2.02	77	2024-05-01
117	6XZ7\|1\|f	Transfer RNA	Deacylated tRNAi(Met)	Escherichia coli	Bacteria	RF00005	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	Electron microscopy	2.1	76	2020-07-22
118	8P2F\|1\|D	Transfer RNA	mRNA, tRNA	Escherichia coli	Bacteria	RF00005	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state	Electron microscopy	2.44	77	2024-05-01
119	9FBV\|1\|Z	Transfer RNA	fMet-tRNA	Escherichia coli BW25113	Bacteria	RF00005	70S Escherichia coli ribosome with P-site initiatior tRNA.	Electron microscopy	2.4	73	2024-06-26
120	8P2F\|1\|F	Transfer RNA	mRNA, tRNA	Escherichia coli	Bacteria	RF00005	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state	Electron microscopy	2.44	76	2024-05-01
121	8P2H\|1\|D	Transfer RNA	mRNA, tRNA	Escherichia coli	Bacteria	RF00005	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state	Electron microscopy	2.49	77	2024-05-01
122	8R6C\|1\|5	Transfer RNA	N-Formylmethionine tRNA	Escherichia coli BW25113	Bacteria	RF00005	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	Electron microscopy	2.2	2	2024-07-24

Release history

Release	4.31
Date	2026-03-18

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	9T2P\|1\|Z	E. coli 70S ribosome from delta-9 strain, PTC class 6	ELECTRON MICROSCOPY	2.08	18
2	9T2O\|1\|Z	E. coli 70S ribosome from delta-9 strain, PTC class 5	ELECTRON MICROSCOPY	2.07	18
3	9T2M\|1\|Z	E. coli 70S ribosome from delta-9 strain, PTC class 3	ELECTRON MICROSCOPY	2.06	18
4	9T2R\|1\|Z	E. coli 70S ribosome from delta-9 strain, PTC class 8	ELECTRON MICROSCOPY	2.22	18
5	9T8Q\|1\|Z	E. coli 70S ribosome from delta-10 strain, PTC class 6	ELECTRON MICROSCOPY	2.23	18
6	9T8S\|1\|Z	E. coli 70S ribosome from delta-10 strain, PTC class 8	ELECTRON MICROSCOPY	2.22	18
7	9T8T\|1\|Z	E. coli 70S ribosome from delta-10 strain, PTC class 9	ELECTRON MICROSCOPY	2.23	18
8	9T8P\|1\|Z	E. coli 70S ribosome from delta-10 strain, PTC class 5	ELECTRON MICROSCOPY	2.22	18
9	9T1B\|1\|Z	E. coli 70S ribosome from delta-RlmE strain, PTC class 2	ELECTRON MICROSCOPY	2.32	18
10	9T2K\|1\|Z	E. coli 70S ribosome from delta-9 strain, PTC class 1	ELECTRON MICROSCOPY	2.06	18
11	9T8N\|1\|Z	E. coli 70S ribosome from delta-10 strain, PTC class 3	ELECTRON MICROSCOPY	2.22	18
12	9T8R\|1\|Z	E. coli 70S ribosome from delta-10 strain, PTC class 7	ELECTRON MICROSCOPY	2.22	18
13	9T2N\|1\|Z	E. coli 70S ribosome from delta-9 strain, PTC class 4	ELECTRON MICROSCOPY	2.06	18
14	9T2Q\|1\|Z	E. coli 70S ribosome from delta-9 strain, PTC class 7	ELECTRON MICROSCOPY	2.08	18
15	9T2S\|1\|Z	E. coli 70S ribosome from delta-9 strain, PTC class 9	ELECTRON MICROSCOPY	2.07	18
16	9T1A\|1\|Z	E. coli 70S ribosome from delta-RlmE strain, PTC class 1	ELECTRON MICROSCOPY	2.39	18
17	9T19\|1\|Z	E. coli 70S ribosome from delta-RlmE strain, PTC class 0	ELECTRON MICROSCOPY	2.41	18
18	9T1E\|1\|Z	E. coli 70S ribosome from delta-RlmE strain, PTC class 4	ELECTRON MICROSCOPY	2.28	18
19	9T2L\|1\|Z	E. coli 70S ribosome from delta-9 strain, PTC class 2	ELECTRON MICROSCOPY	2.07	18
20	9T1F\|1\|Z	E. coli 70S ribosome from delta-RlmE strain, PTC class 5	ELECTRON MICROSCOPY	2.32	18
21	9T1H\|1\|Z	E. coli 70S ribosome from delta-RlmE strain, PTC class 7	ELECTRON MICROSCOPY	2.33	18
22	9T1I\|1\|Z	E. coli 70S ribosome from delta-RlmE strain, PTC class 8	ELECTRON MICROSCOPY	2.3	18
23	9T1G\|1\|Z	E. coli 70S ribosome from delta-RlmE strain, PTC class 6	ELECTRON MICROSCOPY	2.29	18
24	9T1J\|1\|Z	E. coli 70S ribosome from delta-RlmE strain, PTC class 9	ELECTRON MICROSCOPY	2.23	18
25	9QQQ\|1\|Z	Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)	ELECTRON MICROSCOPY	2.26	73
26	9FBV\|1\|Z	70S Escherichia coli ribosome with P-site initiatior tRNA.	ELECTRON MICROSCOPY	2.4	73
27	7K00\|1\|Z	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	76
28	9JPP\|1\|Z	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)	ELECTRON MICROSCOPY	2.26	77
29	9JPM\|1\|Z	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)	ELECTRON MICROSCOPY	2.43	77
30	9T6M\|1\|Z	E. coli 70S ribosome from delta-10 strain	ELECTRON MICROSCOPY	1.87	73
31	9T0Y\|1\|Z	E. coli 70S ribosome from delta-9 strain	ELECTRON MICROSCOPY	1.87	73
32	9SYH\|1\|Z	E. coli 70S ribosome from deltaRlmE strain	ELECTRON MICROSCOPY	1.89	73
33	9T4R\|1\|Z	Staphylococcus aureus 70S initiation complex with a natural mRNA	ELECTRON MICROSCOPY	2.3	76
34	7RQ8\|1\|2x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
35	7RQ8\|1\|1x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
36	9D0J\|1\|1x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
37	9D0G\|1\|1x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
38	9D0H\|1\|1x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
39	9D0I\|1\|1x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	76
40	9D0G\|1\|2x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
41	9D0H\|1\|2x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
42	9D0I\|1\|2x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	76
43	9D0J\|1\|2x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
44	4W2F\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	76
45	4Y4P\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	76
46	6XHV\|1\|2x	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	76
47	6XHV\|1\|1x	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	76
48	8CVL\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-RAY DIFFRACTION	2.3	77
49	8CVJ\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	77
50	8CVK\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	77
51	6XHW\|1\|1x	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
52	10PX\|1\|1x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	77
53	9DFC\|1\|1x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	77
54	8VTU\|1\|1x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	77
55	8VTU\|1\|2x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	77
56	9DFC\|1\|2x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	77
57	8VTX\|1\|2x	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	77
58	8VTX\|1\|1x	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	77
59	8G2A\|1\|1x	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	77
60	8G2A\|1\|2x	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	77
61	8CVL\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-RAY DIFFRACTION	2.3	77
62	8CVK\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	77
63	8CVJ\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	77
64	6XHW\|1\|2x	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	76
65	10PX\|1\|2x	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	77
66	9G6J\|1\|PT	The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA	ELECTRON MICROSCOPY	2.15	76
67	9O2Y\|1\|Z	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl	ELECTRON MICROSCOPY	2.14	76
68	9O2X\|1\|Z	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl	ELECTRON MICROSCOPY	2.29	76
69	8EMM\|1\|Z	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	ELECTRON MICROSCOPY	2.1	76
70	8EIU\|1\|Z	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	ELECTRON MICROSCOPY	2.24	74
71	7Y7F\|1\|Z	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	ELECTRON MICROSCOPY	2.43	77
72	7Y7E\|1\|Z	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.41	77
73	7Y7G\|1\|Z	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	ELECTRON MICROSCOPY	2.34	77
74	8G6Y\|1\|Z	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.09	75
75	8G6X\|1\|Z	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.31	75
76	8G6W\|1\|Z	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.02	75
77	8FTO\|1\|Z	E. coli 70S ribosome with an improved MS2 tag inserted in H98	ELECTRON MICROSCOPY	1.85	76
78	9GHB\|1\|Z	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	ELECTRON MICROSCOPY	2.21	76
79	9GHF\|1\|Z	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	ELECTRON MICROSCOPY	2.4	76
80	9GHD\|1\|Z	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	ELECTRON MICROSCOPY	2.41	76
81	9GHE\|1\|Z	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	ELECTRON MICROSCOPY	1.87	76
82	8AYE\|1\|Z	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	ELECTRON MICROSCOPY	1.96	76
83	9N2B\|1\|Pt	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	ELECTRON MICROSCOPY	2.2	77
84	9N2C\|1\|Pt	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	ELECTRON MICROSCOPY	2.4	77
85	6XZ7\|1\|f	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	ELECTRON MICROSCOPY	2.1	76
86	9H0L\|1\|Z	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	ELECTRON MICROSCOPY	2.49	76
87	8P2F\|1\|F	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state	ELECTRON MICROSCOPY	2.44	76
88	9GHG\|1\|F	Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)	ELECTRON MICROSCOPY	2.22	76
89	4W2F\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	76
90	4Y4P\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	76
91	9B51\|1\|AX	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	ELECTRON MICROSCOPY	2.4	77
92	9B4Z\|1\|AX	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	ELECTRON MICROSCOPY	2.2	77
93	8IFB\|1\|6	Dibekacin-bound E.coli 70S ribosome in the PURE system	ELECTRON MICROSCOPY	2.43	77
94	8BHL\|1\|4	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.21	77
95	8BGE\|1\|4	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.11	77
96	8BHP\|1\|4	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.37	77
97	8BIL\|1\|4	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	ELECTRON MICROSCOPY	2.04	77
98	8BIM\|1\|4	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	ELECTRON MICROSCOPY	2.04	77
99	8B0X\|1\|Z	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	ELECTRON MICROSCOPY	1.55	75
100	9Q87\|1\|Z	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	ELECTRON MICROSCOPY	1.55	77
101	8BF7\|1\|4	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.33	77
102	9G6J\|1\|AT	The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA	ELECTRON MICROSCOPY	2.15	76
103	8EMM\|1\|Y	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	ELECTRON MICROSCOPY	2.1	76
104	8EIU\|1\|Y	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	ELECTRON MICROSCOPY	2.24	74
105	8CGN\|1\|Bb	Non-rotated 80S S. cerevisiae ribosome with ligands	ELECTRON MICROSCOPY	2.28	77
106	9GUU\|1\|W	30S mRNA delivery complex (consensus)	ELECTRON MICROSCOPY	2.5	77
107	9T6M\|1\|5	E. coli 70S ribosome from delta-10 strain	ELECTRON MICROSCOPY	1.87	71
108	9T0Y\|1\|5	E. coli 70S ribosome from delta-9 strain	ELECTRON MICROSCOPY	1.87	71
109	9SYH\|1\|5	E. coli 70S ribosome from deltaRlmE strain	ELECTRON MICROSCOPY	1.89	71
110	9H0L\|1\|V	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	ELECTRON MICROSCOPY	2.49	76
111	9GHG\|1\|D	Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)	ELECTRON MICROSCOPY	2.22	77
112	8P2F\|1\|D	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state	ELECTRON MICROSCOPY	2.44	77
113	8P2H\|1\|D	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state	ELECTRON MICROSCOPY	2.49	77
114	8P2G\|1\|D	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state	ELECTRON MICROSCOPY	2.02	77
115	9GHA\|1\|8	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	ELECTRON MICROSCOPY	2.24	77
116	8CEH\|1\|Cc	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.05	77
117	8CDR\|1\|Cc	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.04	77
118	8CIV\|1\|Cc	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.47	77
119	8CGN\|1\|Cc	Non-rotated 80S S. cerevisiae ribosome with ligands	ELECTRON MICROSCOPY	2.28	77
120	8CCS\|1\|Cc	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	ELECTRON MICROSCOPY	1.97	77
121	7TOP\|1\|APTN	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20	ELECTRON MICROSCOPY	2.4	77
122	8R6C\|1\|5	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	ELECTRON MICROSCOPY	2.2	2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_2.5_35542.162 Current

Release history

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