Equivalence class NR_2.5_40726.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FQ5|1|A+ 5FQ5|1|E (rep) | Trans-activating crRNA | SGRNA, TARGET DNA STRAND DISTAL FRAGMENT | synthetic construct | Synthetic | RF02348 | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-ray diffraction | 2.14 | 100 | 2016-03-23 |
| 2 | 5FW1|1|A+ 5FW1|1|C+ 5FW1|1|D | Trans-activating crRNA | NON-TARGET DNA STRAND, SGRNA, TARGET DNA STRAND | synthetic construct | Synthetic | RF02348 | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.5 | 120 | 2016-04-20 |
| 3 | 4UN4|1|A+ 4UN4|1|E | Trans-activating crRNA | SGRNA, TARGET DNA STRAND DISTAL FRAGMENT | synthetic construct | Synthetic | RF02348 | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-ray diffraction | 2.37 | 99 | 2014-07-23 |
| 4 | 4UN5|1|A+ 4UN5|1|E | Trans-activating crRNA | SGRNA, TARGET DNA STRAND DISTAL FRAGMENT | synthetic construct | Synthetic | RF02348 | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-ray diffraction | 2.4 | 99 | 2014-07-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4UN5|1|A+ 4UN5|1|E | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-RAY DIFFRACTION | 2.4 | 99 | |
| 2 | 5FQ5|1|A+ 5FQ5|1|E | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-RAY DIFFRACTION | 2.14 | 100 | |
| 3 | 4UN4|1|A+ 4UN4|1|E | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-RAY DIFFRACTION | 2.37 | 99 | |
| 4 | 5FW1|1|A+ 5FW1|1|C+ 5FW1|1|D | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.5 | 120 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: